Wall clock time and date at job start Tue Mar 31 2020 14:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 119.99707 * 2 1 4 4 N 1.46504 * 109.47217 * 124.99813 * 3 2 1 5 5 C 1.46505 * 119.99994 * 263.64394 * 4 3 2 6 6 C 1.50701 * 109.47044 * 270.00127 * 5 4 3 7 7 H 1.08000 * 120.00119 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00038 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99962 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00119 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47164 * 90.00022 * 10 8 6 12 12 H 1.48501 * 109.47035 * 209.99960 * 10 8 6 13 13 H 1.48496 * 109.46889 * 329.99653 * 10 8 6 14 14 C 1.34781 * 120.00002 * 83.64201 * 4 3 2 15 15 O 1.21576 * 119.99748 * 184.33135 * 14 4 3 16 16 C 1.47675 * 120.00042 * 4.33512 * 14 4 3 17 17 N 1.31821 * 126.45831 * 354.58105 * 16 14 4 18 18 N 1.28472 * 110.12460 * 180.24062 * 17 16 14 19 19 C 1.46506 * 124.92957 * 179.75530 * 18 17 16 20 20 C 1.35616 * 110.13328 * 359.75579 * 18 17 16 21 21 C 1.35435 * 107.13613 * 359.97438 * 20 18 17 22 22 Br 1.89105 * 127.23896 * 179.97438 * 21 20 18 23 23 H 1.08004 * 120.00162 * 180.02562 * 1 2 3 24 24 H 1.07999 * 120.00714 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.00504 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47635 * 4.99707 * 3 2 1 27 27 H 1.08998 * 109.47003 * 244.99756 * 3 2 1 28 28 H 1.08995 * 109.46873 * 30.00132 * 5 4 3 29 29 H 1.09000 * 109.46962 * 150.00056 * 5 4 3 30 30 H 0.97001 * 119.99987 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.46822 * 269.99546 * 19 18 17 32 32 H 1.08994 * 109.47564 * 29.99798 * 19 18 17 33 33 H 1.08997 * 109.46757 * 150.00207 * 19 18 17 34 34 H 1.08005 * 126.42850 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.6071 1.9900 2.3821 6 6 3.0179 3.4392 2.3351 7 1 3.5174 3.8308 1.4612 8 6 2.7572 4.2648 3.4080 9 7 2.1494 3.7878 4.4723 10 14 3.2670 6.0610 3.3500 11 1 2.1624 6.8708 2.7764 12 1 3.5661 6.5352 4.7251 13 1 4.4780 6.2046 2.5026 14 6 4.2050 0.7514 1.0219 15 8 4.9459 0.7044 1.9847 16 6 4.6323 0.1723 -0.2676 17 7 3.9002 0.0633 -1.3584 18 7 4.5821 -0.4922 -2.2948 19 6 4.0816 -0.7751 -3.6423 20 6 5.8325 -0.7787 -1.8547 21 6 5.9063 -0.3667 -0.5667 22 35 7.3958 -0.4932 0.5916 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5401 0.9352 -0.0004 25 1 1.8500 -0.9352 0.0004 26 1 1.3585 2.1317 0.0895 27 1 2.6212 1.4026 -0.9314 28 1 1.5267 1.9226 2.5092 29 1 3.1029 1.4988 3.2194 30 1 1.9656 4.3688 5.2271 31 1 3.6354 -1.7694 -3.6629 32 1 3.3300 -0.0339 -3.9138 33 1 4.9071 -0.7325 -4.3528 34 1 6.6215 -1.2467 -2.4248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293697424.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:32 Heat of formation + Delta-G solvation = 88.953431 kcal Electronic energy + Delta-G solvation = -20050.394049 eV Core-core repulsion = 16840.183004 eV Total energy + Delta-G solvation = -3210.211045 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.62554 -38.67562 -35.55943 -33.68146 -33.06671 -32.07640 -31.59706 -29.49750 -28.12888 -26.82638 -25.33728 -23.47415 -21.50725 -21.27051 -19.82482 -18.71265 -17.14991 -16.49944 -16.29820 -16.09324 -15.29648 -14.57620 -14.21930 -14.07930 -13.84067 -13.53231 -13.15099 -12.88229 -12.67171 -12.53851 -12.08371 -11.79843 -11.21573 -11.00692 -10.97584 -10.81219 -10.62139 -10.50738 -10.13980 -9.96335 -9.56679 -9.24203 -8.94228 -8.90264 -8.65062 -8.36889 -7.57899 -5.97872 -4.02419 1.69939 1.74320 1.99430 2.58080 2.62913 3.34818 3.41328 3.46389 3.92737 4.09361 4.34355 4.50166 4.60711 4.79410 4.95901 5.07640 5.26651 5.35167 5.37663 5.46784 5.59676 5.90956 6.08229 6.23317 6.37656 6.67005 6.96661 7.06567 7.19867 7.52320 7.63082 7.83860 7.99475 8.29601 8.46458 8.95072 9.12805 9.62274 11.10126 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.005362 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.895302 B = 5220.403867 C = 6721.415374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.141 4.141 3 C 0.130 3.870 4 N -0.578 5.578 5 C 0.247 3.753 6 C -0.525 4.525 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.581 3.419 15 O -0.513 6.513 16 C 0.030 3.970 17 N -0.248 5.248 18 N -0.293 5.293 19 C 0.090 3.910 20 C 0.014 3.986 21 C -0.161 4.161 22 Br 0.008 6.992 23 H 0.090 0.910 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.035 0.965 29 H 0.047 0.953 30 H 0.263 0.737 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.299 -12.177 -18.143 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.160 4.160 3 C 0.006 3.994 4 N -0.308 5.308 5 C 0.129 3.871 6 C -0.564 4.564 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.365 3.635 15 O -0.387 6.387 16 C -0.133 4.133 17 N -0.082 5.082 18 N -0.080 5.080 19 C -0.051 4.051 20 C -0.132 4.132 21 C -0.251 4.251 22 Br 0.092 6.908 23 H 0.108 0.892 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 5.050 -11.966 -17.548 21.831 hybrid contribution 0.615 0.761 -0.135 0.988 sum 5.665 -11.205 -17.683 21.687 Atomic orbital electron populations 1.23725 0.95803 1.01383 1.02809 1.23295 0.95847 0.99047 0.97836 1.20880 0.92954 0.94744 0.90824 1.48090 1.13219 1.53330 1.16198 1.19353 0.95978 0.91871 0.79939 1.21441 1.38558 0.94263 1.02169 0.92415 1.24914 0.95124 0.98836 0.95111 1.69940 1.41726 1.35928 1.05710 0.86513 0.78908 0.84760 0.77356 1.20697 1.21090 1.19867 1.16860 0.82643 0.79188 0.84830 1.90823 1.52753 1.58068 1.37011 1.22414 0.91549 1.04487 0.94803 1.73971 1.22700 1.14902 0.96668 1.45719 1.08632 1.42066 1.11539 1.22167 1.01885 1.03687 0.77344 1.22712 0.90043 1.05546 0.94909 1.21958 0.95966 1.11729 0.95448 1.96655 1.33935 1.97476 1.62778 0.89158 0.88489 0.88378 0.89953 0.88392 0.94746 0.93494 0.92758 0.89675 0.88300 0.88728 0.79613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.86 14.32 29.02 0.42 -2.45 16 2 C -0.14 -2.29 9.02 -36.02 -0.32 -2.62 16 3 C 0.13 2.41 5.45 -5.19 -0.03 2.38 16 4 N -0.58 -13.26 2.46 -177.61 -0.44 -13.70 16 5 C 0.25 6.71 5.17 -5.19 -0.03 6.68 16 6 C -0.53 -15.26 9.39 -34.44 -0.32 -15.59 16 7 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 8 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 10 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.58 13.38 7.62 -12.40 -0.09 13.28 16 15 O -0.51 -13.41 15.17 5.30 0.08 -13.33 16 16 C 0.03 0.56 6.81 -82.76 -0.56 0.00 16 17 N -0.25 -3.78 7.71 33.42 0.26 -3.53 16 18 N -0.29 -3.29 3.72 -67.95 -0.25 -3.54 16 19 C 0.09 0.49 11.32 59.85 0.68 1.17 16 20 C 0.01 0.16 11.48 -16.88 -0.19 -0.04 16 21 C -0.16 -2.57 6.68 -39.33 -0.26 -2.83 16 22 Br 0.01 0.13 32.72 -68.01 -2.23 -2.10 16 23 H 0.09 1.13 8.06 -52.48 -0.42 0.70 16 24 H 0.10 1.36 7.84 -52.49 -0.41 0.94 16 25 H 0.10 1.62 7.90 -52.49 -0.41 1.21 16 26 H 0.08 1.55 7.68 -51.93 -0.40 1.15 16 27 H 0.10 1.71 5.30 -51.93 -0.28 1.44 16 28 H 0.03 0.95 8.07 -51.93 -0.42 0.53 16 29 H 0.05 1.42 7.37 -51.93 -0.38 1.04 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.25 8.13 -51.93 -0.42 -0.18 16 34 H 0.19 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 319.43 15.07 4.81 4.81 Total: -1.00 -35.07 319.43 -6.83 -41.90 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -3.96 Total: -3.22 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.82 Total: 1.71 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.31 Total: -47.02 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 35 Polarization: 0.13 SS G_CDS: -2.23 Total: -2.10 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.07 -6.83 -41.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293697424.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.850 kcal (2) G-P(sol) polarization free energy of solvation -35.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds