Wall clock time and date at job start Tue Mar 31 2020 14:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 119.99707 * 2 1 4 4 N 1.46504 * 109.47217 * 124.99813 * 3 2 1 5 5 C 1.46505 * 119.99994 * 263.64394 * 4 3 2 6 6 C 1.50701 * 109.47044 * 270.00127 * 5 4 3 7 7 H 1.08000 * 120.00119 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00038 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99962 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00119 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47164 * 90.00022 * 10 8 6 12 12 H 1.48501 * 109.47035 * 209.99960 * 10 8 6 13 13 H 1.48496 * 109.46889 * 329.99653 * 10 8 6 14 14 C 1.34781 * 120.00002 * 83.64201 * 4 3 2 15 15 O 1.21576 * 119.99748 * 184.33135 * 14 4 3 16 16 C 1.47675 * 120.00042 * 4.33512 * 14 4 3 17 17 N 1.31821 * 126.45831 * 354.58105 * 16 14 4 18 18 N 1.28472 * 110.12460 * 180.24062 * 17 16 14 19 19 C 1.46506 * 124.92957 * 179.75530 * 18 17 16 20 20 C 1.35616 * 110.13328 * 359.75579 * 18 17 16 21 21 C 1.35435 * 107.13613 * 359.97438 * 20 18 17 22 22 Br 1.89105 * 127.23896 * 179.97438 * 21 20 18 23 23 H 1.08004 * 120.00162 * 180.02562 * 1 2 3 24 24 H 1.07999 * 120.00714 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.00504 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47635 * 4.99707 * 3 2 1 27 27 H 1.08998 * 109.47003 * 244.99756 * 3 2 1 28 28 H 1.08995 * 109.46873 * 30.00132 * 5 4 3 29 29 H 1.09000 * 109.46962 * 150.00056 * 5 4 3 30 30 H 0.97001 * 119.99987 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.46822 * 269.99546 * 19 18 17 32 32 H 1.08994 * 109.47564 * 29.99798 * 19 18 17 33 33 H 1.08997 * 109.46757 * 150.00207 * 19 18 17 34 34 H 1.08005 * 126.42850 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.6071 1.9900 2.3821 6 6 3.0179 3.4392 2.3351 7 1 3.5174 3.8308 1.4612 8 6 2.7572 4.2648 3.4080 9 7 2.1494 3.7878 4.4723 10 14 3.2670 6.0610 3.3500 11 1 2.1624 6.8708 2.7764 12 1 3.5661 6.5352 4.7251 13 1 4.4780 6.2046 2.5026 14 6 4.2050 0.7514 1.0219 15 8 4.9459 0.7044 1.9847 16 6 4.6323 0.1723 -0.2676 17 7 3.9002 0.0633 -1.3584 18 7 4.5821 -0.4922 -2.2948 19 6 4.0816 -0.7751 -3.6423 20 6 5.8325 -0.7787 -1.8547 21 6 5.9063 -0.3667 -0.5667 22 35 7.3958 -0.4932 0.5916 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5401 0.9352 -0.0004 25 1 1.8500 -0.9352 0.0004 26 1 1.3585 2.1317 0.0895 27 1 2.6212 1.4026 -0.9314 28 1 1.5267 1.9226 2.5092 29 1 3.1029 1.4988 3.2194 30 1 1.9656 4.3688 5.2271 31 1 3.6354 -1.7694 -3.6629 32 1 3.3300 -0.0339 -3.9138 33 1 4.9071 -0.7325 -4.3528 34 1 6.6215 -1.2467 -2.4248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293697424.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:31 Heat of formation + Delta-G solvation = 65.675595 kcal Electronic energy + Delta-G solvation = -20051.403452 eV Core-core repulsion = 16840.183004 eV Total energy + Delta-G solvation = -3211.220448 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.71261 -40.40589 -37.23393 -35.18927 -34.52788 -33.68912 -32.83303 -30.60105 -29.84510 -28.09396 -26.88901 -25.27474 -22.98326 -22.31870 -21.18035 -20.11889 -18.63332 -18.37632 -17.53436 -17.29303 -17.08011 -16.14201 -16.03261 -15.58251 -14.77275 -14.72728 -14.38050 -14.32945 -14.10317 -13.62487 -13.36404 -13.30830 -13.16724 -12.95242 -12.57866 -12.24954 -12.21146 -12.10747 -11.89221 -11.64178 -11.36023 -10.63367 -10.53308 -10.37283 -10.16796 -9.80667 -9.42155 -8.21166 -6.36261 0.49556 0.67254 0.84831 1.34796 1.37202 1.40085 1.50794 1.66967 2.27093 2.44303 2.51092 3.08036 3.36779 3.70916 3.89731 4.11521 4.26304 4.35590 4.47510 4.49329 4.54391 4.74185 4.76498 4.93959 5.03504 5.11509 5.23427 5.52651 5.70586 5.75051 5.79219 5.98595 6.06319 6.61194 6.72336 6.78932 7.25828 7.41713 8.86141 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.005362 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.895302 B = 5220.403867 C = 6721.415374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.160 4.160 3 C 0.133 3.867 4 N -0.587 5.587 5 C 0.266 3.734 6 C -0.544 4.544 7 H 0.050 0.950 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.968 3.032 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.274 1.274 14 C 0.573 3.427 15 O -0.562 6.562 16 C -0.010 4.010 17 N -0.246 5.246 18 N -0.274 5.274 19 C 0.075 3.925 20 C 0.047 3.953 21 C -0.191 4.191 22 Br -0.007 7.007 23 H 0.116 0.884 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.111 0.889 28 H 0.023 0.977 29 H 0.003 0.997 30 H 0.268 0.732 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.134 0.866 34 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.152 -12.523 -21.547 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.179 4.179 3 C 0.011 3.989 4 N -0.317 5.317 5 C 0.145 3.855 6 C -0.582 4.582 7 H 0.069 0.931 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.792 3.208 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.199 1.199 14 C 0.359 3.641 15 O -0.439 6.439 16 C -0.170 4.170 17 N -0.084 5.084 18 N -0.062 5.062 19 C -0.063 4.063 20 C -0.099 4.099 21 C -0.281 4.281 22 Br 0.077 6.923 23 H 0.134 0.866 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.092 0.908 27 H 0.128 0.872 28 H 0.041 0.959 29 H 0.021 0.979 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.153 0.847 34 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 4.864 -12.326 -21.008 24.838 hybrid contribution 0.585 0.762 0.770 1.231 sum 5.449 -11.564 -20.238 23.937 Atomic orbital electron populations 1.23973 0.95089 1.02815 0.99450 1.23045 0.96360 0.97627 1.00849 1.21009 0.92338 0.95915 0.89656 1.48072 1.14479 1.53185 1.15919 1.18782 0.94476 0.91241 0.81004 1.21651 1.38950 0.95300 1.02310 0.93136 1.25831 0.94796 1.03695 0.94492 1.70058 1.42365 1.37781 1.06360 0.85416 0.78838 0.78957 0.77613 1.18678 1.20362 1.19924 1.17465 0.81865 0.78465 0.86271 1.90765 1.53936 1.59991 1.39238 1.21693 0.93485 1.07809 0.94062 1.73816 1.22886 1.15098 0.96561 1.46326 1.08334 1.39225 1.12326 1.22779 1.03866 1.04977 0.74661 1.23357 0.90652 1.02754 0.93150 1.22163 0.94953 1.13713 0.97314 1.96613 1.34093 1.97537 1.64052 0.86553 0.88099 0.88625 0.90827 0.87184 0.95856 0.97908 0.92318 0.87481 0.87831 0.84744 0.74526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.75 14.32 67.79 0.97 -3.77 16 2 C -0.16 -5.12 9.02 25.65 0.23 -4.89 16 3 C 0.13 5.03 5.45 85.63 0.47 5.50 16 4 N -0.59 -28.31 2.46 -834.09 -2.05 -30.36 16 5 C 0.27 15.32 5.17 85.63 0.44 15.76 16 6 C -0.54 -32.85 9.39 25.60 0.24 -32.61 16 7 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 8 C 0.01 0.66 5.46 84.65 0.46 1.12 16 9 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 10 Si 0.97 46.29 29.54 68.60 2.03 48.31 16 11 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 14 C 0.57 27.75 7.62 86.74 0.66 28.41 16 15 O -0.56 -31.43 15.17 -3.96 -0.06 -31.49 16 16 C -0.01 -0.39 6.81 42.45 0.29 -0.10 16 17 N -0.25 -7.17 7.71 -48.18 -0.37 -7.54 16 18 N -0.27 -5.18 3.72 -368.89 -1.37 -6.55 16 19 C 0.07 0.44 11.32 127.77 1.45 1.89 16 20 C 0.05 0.91 11.48 83.46 0.96 1.87 16 21 C -0.19 -5.94 6.68 22.43 0.15 -5.79 16 22 Br -0.01 -0.21 32.72 -20.37 -0.67 -0.88 16 23 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 24 H 0.10 2.66 7.84 -2.91 -0.02 2.64 16 25 H 0.10 3.13 7.90 -2.91 -0.02 3.11 16 26 H 0.07 2.84 7.68 -2.39 -0.02 2.82 16 27 H 0.11 3.84 5.30 -2.39 -0.01 3.83 16 28 H 0.02 1.37 8.07 -2.39 -0.02 1.35 16 29 H 0.00 0.18 7.37 -2.39 -0.02 0.17 16 30 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 31 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.13 -0.17 8.13 -2.39 -0.02 -0.19 16 34 H 0.24 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -82.26 319.43 5.22 -77.04 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: 1.11 Total: 1.26 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 6.32 Total: 7.38 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -3.51 Total: -101.63 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.06 Total: -31.49 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -0.67 Total: -0.88 kcal Total: -82.26 5.22 -77.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293697424.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.716 kcal (2) G-P(sol) polarization free energy of solvation -82.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds