Wall clock time and date at job start Tue Mar 31 2020 15:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38291 * 119.92819 * 2 1 4 4 C 1.38089 * 120.07997 * 180.28427 * 3 2 1 5 5 C 1.38947 * 119.94517 * 359.43774 * 4 3 2 6 6 N 1.39669 * 120.06759 * 180.26007 * 5 4 3 7 7 C 1.46499 * 120.00457 * 359.97438 * 6 5 4 8 8 C 1.46508 * 119.99578 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.46823 * 90.00008 * 8 6 5 10 10 O 1.42906 * 109.46973 * 64.99953 * 9 8 6 11 11 C 1.42901 * 113.99625 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.46815 * 179.97438 * 11 10 9 13 13 H 1.07993 * 119.99830 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99742 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99901 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99729 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47321 * 59.99600 * 16 14 12 18 18 H 1.48507 * 109.46958 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47167 * 299.99448 * 16 14 12 20 20 C 1.38871 * 119.85889 * 0.28145 * 5 4 3 21 21 C 1.38212 * 119.91685 * 0.02562 * 20 5 4 22 22 Br 1.89102 * 119.97476 * 180.02562 * 21 20 5 23 23 H 1.09008 * 109.46765 * 270.27929 * 1 2 3 24 24 H 1.08998 * 109.47062 * 30.27598 * 1 2 3 25 25 H 1.08992 * 109.47314 * 150.27927 * 1 2 3 26 26 H 1.07997 * 119.96364 * 0.02562 * 3 2 1 27 27 H 1.08002 * 120.03036 * 179.72172 * 4 3 2 28 28 H 1.08998 * 109.46596 * 90.00044 * 7 6 5 29 29 H 1.08996 * 109.47038 * 209.99971 * 7 6 5 30 30 H 1.08997 * 109.47009 * 330.00686 * 7 6 5 31 31 H 1.09000 * 109.46972 * 209.99685 * 8 6 5 32 32 H 1.08999 * 109.47132 * 330.00160 * 8 6 5 33 33 H 1.08998 * 109.46877 * 184.99570 * 9 8 6 34 34 H 1.08998 * 109.47405 * 304.99854 * 9 8 6 35 35 H 1.08991 * 109.47331 * 300.00152 * 11 10 9 36 36 H 1.09007 * 109.46964 * 60.00273 * 11 10 9 37 37 H 0.96998 * 119.99569 * 180.02562 * 15 14 12 38 38 H 1.07999 * 120.04428 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1985 0.0000 4 6 3.5779 1.2022 -0.0059 5 6 4.2747 0.0001 -0.0001 6 7 5.6714 0.0008 -0.0006 7 6 6.4033 1.2699 -0.0078 8 6 6.4045 -1.2676 0.0062 9 6 6.6592 -1.7171 -1.4340 10 8 7.5270 -0.7822 -2.0784 11 6 7.8306 -1.1110 -3.4355 12 6 8.7469 -0.0632 -4.0132 13 1 9.0651 0.7705 -3.4050 14 6 9.1780 -0.1685 -5.3187 15 7 8.7900 -1.1836 -6.0594 16 14 10.3142 1.1298 -6.0346 17 1 11.5707 1.1780 -5.2445 18 1 10.6297 0.7882 -7.4450 19 1 9.6461 2.4550 -5.9833 20 6 3.5795 -1.2021 0.0058 21 6 2.1973 -1.1990 0.0053 22 35 1.2490 -2.8350 0.0140 23 1 -0.3633 0.0050 1.0278 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3633 -0.8924 -0.5094 26 1 1.6553 2.1328 0.0004 27 1 4.1159 2.1386 -0.0105 28 1 6.5851 1.5902 1.0180 29 1 7.3556 1.1371 -0.5212 30 1 5.8136 2.0264 -0.5255 31 1 7.3571 -1.1340 0.5189 32 1 5.8160 -2.0247 0.5243 33 1 7.1253 -2.7023 -1.4301 34 1 5.7127 -1.7650 -1.9725 35 1 8.3211 -2.0836 -3.4727 36 1 6.9084 -1.1466 -4.0157 37 1 9.0936 -1.2579 -6.9777 38 1 4.1180 -2.1382 0.0099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294384286.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:30 Heat of formation + Delta-G solvation = -35.054450 kcal Electronic energy + Delta-G solvation = -19614.266485 eV Core-core repulsion = 16502.218398 eV Total energy + Delta-G solvation = -3112.048087 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.79885 -38.85619 -37.29281 -34.94593 -33.39483 -32.74747 -31.42516 -30.20480 -29.04959 -27.97636 -25.83096 -24.51113 -23.72553 -22.86914 -21.15190 -18.69064 -18.42900 -17.38585 -17.23132 -16.53490 -16.28880 -15.99210 -15.77334 -15.07485 -15.00286 -14.88024 -14.58818 -14.45530 -13.73435 -13.52220 -13.18518 -13.10372 -13.02544 -12.90011 -12.72871 -12.62248 -12.47891 -12.38428 -12.11001 -11.85784 -11.72835 -11.31005 -11.06317 -10.89778 -10.49985 -10.26140 -9.71615 -8.34043 -8.16760 -6.46909 0.22744 0.54657 0.67301 1.38803 1.43508 1.51938 2.19053 2.32849 2.74795 3.00204 3.15164 3.84324 3.97747 4.11488 4.16842 4.18131 4.31952 4.38569 4.49749 4.51908 4.63347 4.70384 4.75814 4.81525 4.86268 4.87918 4.91901 5.05620 5.12986 5.15129 5.25353 5.37178 5.51981 5.57962 5.80942 5.92983 6.28372 6.46571 6.56149 6.78474 7.25170 8.78420 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.018211 B = 0.003017 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.193729 B = 9277.698128 C = 9741.554218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.133 4.133 3 C -0.065 4.065 4 C -0.189 4.189 5 C 0.207 3.793 6 N -0.624 5.624 7 C 0.097 3.903 8 C 0.134 3.866 9 C 0.035 3.965 10 O -0.396 6.396 11 C 0.212 3.788 12 C -0.546 4.546 13 H 0.065 0.935 14 C 0.005 3.995 15 N -0.932 5.932 16 Si 0.984 3.016 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.265 1.265 20 C -0.187 4.187 21 C -0.055 4.055 22 Br -0.051 7.051 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.155 0.845 27 H 0.140 0.860 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.054 0.946 34 H 0.026 0.974 35 H -0.016 1.016 36 H -0.025 1.025 37 H 0.270 0.730 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.649 1.503 16.617 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.137 4.137 3 C -0.084 4.084 4 C -0.212 4.212 5 C 0.103 3.897 6 N -0.333 5.333 7 C -0.046 4.046 8 C 0.011 3.989 9 C -0.043 4.043 10 O -0.316 6.316 11 C 0.137 3.863 12 C -0.584 4.584 13 H 0.083 0.917 14 C -0.193 4.193 15 N -0.571 5.571 16 Si 0.806 3.194 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.211 4.211 21 C -0.135 4.135 22 Br 0.035 6.965 23 H 0.098 0.902 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.173 0.827 27 H 0.158 0.842 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.002 0.998 36 H -0.007 1.007 37 H 0.079 0.921 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.696 0.969 16.550 23.529 hybrid contribution 0.809 0.116 -0.992 1.286 sum -15.887 1.085 15.558 22.262 Atomic orbital electron populations 1.20860 0.89124 1.03635 1.03172 1.19846 0.97569 0.91247 1.05068 1.21058 0.92984 0.97918 0.96489 1.21086 0.94996 0.96842 1.08238 1.17984 0.83663 0.93984 0.94030 1.46513 1.01690 1.06505 1.78544 1.21694 0.96797 0.84680 1.01397 1.21556 0.97770 0.86351 0.93270 1.23095 0.92882 0.93041 0.95298 1.87786 1.66994 1.49818 1.27019 1.19762 0.93266 0.95063 0.78185 1.21339 1.29667 1.09639 0.97746 0.91656 1.25992 0.98059 0.98557 0.96696 1.70077 1.45969 1.31807 1.09279 0.85228 0.78612 0.78335 0.77220 1.18769 1.20188 1.18943 1.20617 0.92658 0.97539 1.10326 1.21543 0.93845 0.91592 1.06555 1.96617 1.75102 1.27218 1.97598 0.90247 0.90050 0.91514 0.82704 0.84218 0.91508 0.92090 0.91390 0.88833 0.87425 0.92832 0.95551 0.99803 1.00715 0.92079 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.55 71.24 0.68 -1.20 16 2 C -0.13 -2.99 5.88 -19.82 -0.12 -3.11 16 3 C -0.07 -1.38 9.69 22.25 0.22 -1.16 16 4 C -0.19 -4.60 9.21 22.40 0.21 -4.39 16 5 C 0.21 5.79 6.55 38.21 0.25 6.04 16 6 N -0.62 -17.86 2.97 -722.19 -2.15 -20.01 16 7 C 0.10 2.58 10.01 127.77 1.28 3.85 16 8 C 0.13 3.73 5.56 86.38 0.48 4.21 16 9 C 0.04 1.30 6.28 71.98 0.45 1.75 16 10 O -0.40 -18.87 9.15 -148.98 -1.36 -20.24 16 11 C 0.21 12.03 5.69 71.24 0.41 12.44 16 12 C -0.55 -32.35 9.43 25.60 0.24 -32.11 16 13 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 14 C 0.01 0.31 5.46 84.65 0.46 0.78 16 15 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 16 Si 0.98 44.08 29.54 68.60 2.03 46.11 16 17 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 18 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 20 C -0.19 -5.12 8.95 22.42 0.20 -4.92 16 21 C -0.06 -1.41 6.22 22.29 0.14 -1.27 16 22 Br -0.05 -1.15 31.77 -20.37 -0.65 -1.79 16 23 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 25 H 0.07 1.19 6.63 -2.39 -0.02 1.17 16 26 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 27 H 0.14 2.97 6.14 -2.91 -0.02 2.95 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.94 7.11 -2.39 -0.02 1.92 16 30 H 0.07 1.71 6.20 -2.39 -0.01 1.70 16 31 H 0.09 2.42 8.07 -2.39 -0.02 2.40 16 32 H 0.11 2.44 6.20 -2.39 -0.01 2.43 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 35 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 36 H -0.02 -1.52 8.14 -2.38 -0.02 -1.54 16 37 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.13 3.41 6.14 -2.91 -0.02 3.39 16 Total: -1.00 -67.37 334.13 4.10 -63.27 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.05 Total: 8.00 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 4.90 Total: -19.08 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -1.86 Total: -76.26 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -1.36 Total: -20.24 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 35 Polarization: -1.15 SS G_CDS: -0.65 Total: -1.79 kcal Total: -67.37 4.10 -63.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294384286.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.212 kcal (2) G-P(sol) polarization free energy of solvation -67.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds