Wall clock time and date at job start Tue Mar 31 2020 14:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99968 * 2 1 4 4 N 1.46498 * 109.46958 * 125.17211 * 3 2 1 5 5 C 1.46503 * 119.99552 * 274.86539 * 4 3 2 6 6 C 1.50701 * 109.47117 * 270.00142 * 5 4 3 7 7 H 1.07992 * 120.00263 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99681 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00392 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99590 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46813 * 90.00553 * 10 8 6 12 12 H 1.48499 * 109.46895 * 210.00175 * 10 8 6 13 13 H 1.48491 * 109.47482 * 330.00656 * 10 8 6 14 14 C 1.34774 * 120.00333 * 94.86851 * 4 3 2 15 15 O 1.21645 * 120.00075 * 185.02570 * 14 4 3 16 16 C 1.47056 * 120.00086 * 5.03242 * 14 4 3 17 17 C 1.38516 * 126.89885 * 260.37838 * 16 14 4 18 18 Br 1.89102 * 127.33241 * 0.02562 * 17 16 14 19 19 C 1.39775 * 105.33353 * 180.28070 * 17 16 14 20 20 N 1.30843 * 107.87059 * 359.56533 * 19 17 16 21 21 N 1.28436 * 110.96949 * 0.45302 * 20 19 17 22 22 C 1.46500 * 125.18488 * 179.74909 * 21 20 19 23 23 H 1.08002 * 119.99982 * 0.02562 * 1 2 3 24 24 H 1.07996 * 120.00042 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99982 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47084 * 5.16658 * 3 2 1 27 27 H 1.09001 * 109.47043 * 245.16551 * 3 2 1 28 28 H 1.09002 * 109.47182 * 30.00477 * 5 4 3 29 29 H 1.09004 * 109.46842 * 150.00481 * 5 4 3 30 30 H 0.96996 * 120.00150 * 179.97438 * 9 8 6 31 31 H 1.08004 * 126.06522 * 179.70184 * 19 17 16 32 32 H 1.09000 * 109.47133 * 274.90552 * 22 21 20 33 33 H 1.08996 * 109.47420 * 34.90709 * 22 21 20 34 34 H 1.09004 * 109.46873 * 154.90958 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9967 1.3302 1.1290 5 6 2.5354 1.7612 2.4511 6 6 2.7239 3.2501 2.5881 7 1 3.1447 3.8185 1.7719 8 6 2.3580 3.8868 3.7551 9 7 1.8451 3.1948 4.7488 10 14 2.5923 5.7323 3.9251 11 1 1.3705 6.4319 3.4529 12 1 2.8371 6.0709 5.3501 13 1 3.7554 6.1611 3.1076 14 6 4.2795 0.9568 0.9516 15 8 5.0310 0.8898 1.9057 16 6 4.7706 0.6306 -0.3956 17 6 4.9330 -0.6336 -0.9381 18 35 4.5711 -2.2932 -0.1071 19 6 5.4269 -0.4214 -2.2283 20 7 5.5293 0.8700 -2.4118 21 7 5.1591 1.5139 -1.3640 22 6 5.1533 2.9725 -1.2276 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3588 2.1315 0.0925 27 1 2.6190 1.4040 -0.9326 28 1 1.4793 1.5166 2.5650 29 1 3.1121 1.2496 3.2217 30 1 1.5881 3.6426 5.5699 31 1 5.6773 -1.1876 -2.9472 32 1 6.1418 3.3125 -0.9187 33 1 4.8958 3.4259 -2.1848 34 1 4.4179 3.2644 -0.4777 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295473673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:32 Heat of formation + Delta-G solvation = 74.789793 kcal Electronic energy + Delta-G solvation = -20359.022734 eV Core-core repulsion = 17148.197507 eV Total energy + Delta-G solvation = -3210.825227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.55248 -38.96551 -35.82322 -33.66182 -33.29173 -32.25433 -31.67742 -29.80124 -27.66777 -26.96276 -25.64582 -23.81155 -21.56712 -21.40781 -19.94866 -18.87009 -17.38719 -16.66061 -16.46400 -15.62004 -15.47333 -14.72824 -14.47461 -14.38507 -13.92442 -13.67159 -13.00919 -12.93778 -12.76945 -12.55324 -12.21551 -11.76717 -11.44555 -11.27026 -11.13294 -11.03788 -10.87989 -10.71118 -10.32600 -10.01714 -9.80752 -9.49820 -9.26373 -9.10828 -8.64169 -8.53709 -7.91697 -6.15564 -4.22102 1.58177 1.61620 2.39627 2.44387 2.51178 3.16449 3.21796 3.29525 3.31191 3.69779 4.32779 4.51853 4.68571 5.03713 5.09148 5.18447 5.19278 5.33158 5.39457 5.41725 5.47463 5.53827 5.94751 6.14064 6.19138 6.60175 6.82059 6.84848 6.97383 7.28964 7.35144 7.78387 7.93857 8.07316 8.11109 8.62115 8.82914 9.43129 10.92543 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.005058 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.687917 B = 5534.434592 C = 6062.444017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.167 4.167 3 C 0.136 3.864 4 N -0.575 5.575 5 C 0.247 3.753 6 C -0.534 4.534 7 H 0.057 0.943 8 C 0.065 3.935 9 N -0.889 5.889 10 Si 0.898 3.102 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.575 3.425 15 O -0.509 6.509 16 C 0.036 3.964 17 C -0.182 4.182 18 Br -0.005 7.005 19 C 0.036 3.964 20 N -0.284 5.284 21 N -0.268 5.268 22 C 0.082 3.918 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.265 0.735 31 H 0.191 0.809 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.970 -7.547 -14.494 16.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.186 4.186 3 C 0.012 3.988 4 N -0.306 5.306 5 C 0.128 3.872 6 C -0.573 4.573 7 H 0.075 0.925 8 C -0.138 4.138 9 N -0.527 5.527 10 Si 0.726 3.274 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.356 3.644 15 O -0.383 6.383 16 C -0.097 4.097 17 C -0.273 4.273 18 Br 0.079 6.921 19 C -0.143 4.143 20 N -0.114 5.114 21 N -0.055 5.055 22 C -0.058 4.058 23 H 0.117 0.883 24 H 0.114 0.886 25 H 0.127 0.873 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.208 0.792 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.481 -7.137 -14.214 16.098 hybrid contribution -0.072 0.735 0.499 0.892 sum 2.410 -6.402 -13.715 15.326 Atomic orbital electron populations 1.23803 0.95686 1.01799 1.00427 1.23387 0.96403 0.98944 0.99916 1.20615 0.92925 0.96099 0.89117 1.48242 1.07301 1.62272 1.12797 1.19417 0.95754 0.95053 0.76934 1.21340 1.42823 0.92378 1.00715 0.92523 1.24918 0.94874 0.98618 0.95414 1.69923 1.41821 1.35924 1.05031 0.86501 0.78434 0.84924 0.77587 1.20541 1.20967 1.19897 1.16917 0.83343 0.78970 0.85132 1.90852 1.55823 1.51392 1.40232 1.21943 1.05067 0.89553 0.93110 1.22224 1.15997 0.91242 0.97806 1.96628 1.94436 1.20631 1.80440 1.23433 1.03018 0.92593 0.95297 1.73179 1.20448 1.06733 1.11086 1.45678 1.44631 1.07739 1.07482 1.22356 1.05493 0.72556 1.05373 0.88340 0.88567 0.87265 0.89129 0.91433 0.94288 0.93354 0.92503 0.79183 0.89179 0.88122 0.87763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 14.32 29.01 0.42 -1.99 16 2 C -0.17 -2.55 9.84 -36.02 -0.35 -2.90 16 3 C 0.14 2.25 5.80 -5.19 -0.03 2.22 16 4 N -0.58 -11.83 2.44 -177.84 -0.43 -12.27 16 5 C 0.25 6.16 5.22 -5.19 -0.03 6.14 16 6 C -0.53 -14.15 9.39 -34.44 -0.32 -14.47 16 7 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 10 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 14 C 0.57 12.05 6.72 -12.69 -0.09 11.97 16 15 O -0.51 -12.82 16.66 5.24 0.09 -12.73 16 16 C 0.04 0.64 4.81 -82.02 -0.39 0.24 16 17 C -0.18 -2.86 6.76 -38.90 -0.26 -3.12 16 18 Br 0.00 -0.07 33.95 -68.01 -2.31 -2.38 16 19 C 0.04 0.49 12.03 -17.40 -0.21 0.28 16 20 N -0.28 -4.13 11.90 30.61 0.36 -3.77 16 21 N -0.27 -4.08 3.54 -63.86 -0.23 -4.31 16 22 C 0.08 1.01 11.22 59.85 0.67 1.68 16 23 H 0.10 1.26 7.84 -52.49 -0.41 0.85 16 24 H 0.10 1.12 8.06 -52.49 -0.42 0.70 16 25 H 0.11 1.69 8.03 -52.49 -0.42 1.27 16 26 H 0.09 1.48 7.76 -51.93 -0.40 1.08 16 27 H 0.07 1.03 6.45 -51.93 -0.34 0.69 16 28 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 29 H 0.05 1.38 7.36 -51.93 -0.38 0.99 16 30 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.19 1.87 8.06 -52.48 -0.42 1.45 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.42 7.66 -51.93 -0.40 1.02 16 LS Contribution 325.88 15.07 4.91 4.91 Total: -1.00 -31.49 325.88 -6.59 -38.08 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.01 Total: -0.26 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -0.70 Total: 1.70 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.44 Total: -45.01 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -2.31 Total: -2.38 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.49 -6.59 -38.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295473673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.870 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds