Wall clock time and date at job start Tue Mar 31 2020 14:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99968 * 2 1 4 4 N 1.46498 * 109.46958 * 125.17211 * 3 2 1 5 5 C 1.46503 * 119.99552 * 274.86539 * 4 3 2 6 6 C 1.50701 * 109.47117 * 270.00142 * 5 4 3 7 7 H 1.07992 * 120.00263 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99681 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00392 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99590 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46813 * 90.00553 * 10 8 6 12 12 H 1.48499 * 109.46895 * 210.00175 * 10 8 6 13 13 H 1.48491 * 109.47482 * 330.00656 * 10 8 6 14 14 C 1.34774 * 120.00333 * 94.86851 * 4 3 2 15 15 O 1.21645 * 120.00075 * 185.02570 * 14 4 3 16 16 C 1.47056 * 120.00086 * 5.03242 * 14 4 3 17 17 C 1.38516 * 126.89885 * 260.37838 * 16 14 4 18 18 Br 1.89102 * 127.33241 * 0.02562 * 17 16 14 19 19 C 1.39775 * 105.33353 * 180.28070 * 17 16 14 20 20 N 1.30843 * 107.87059 * 359.56533 * 19 17 16 21 21 N 1.28436 * 110.96949 * 0.45302 * 20 19 17 22 22 C 1.46500 * 125.18488 * 179.74909 * 21 20 19 23 23 H 1.08002 * 119.99982 * 0.02562 * 1 2 3 24 24 H 1.07996 * 120.00042 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99982 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47084 * 5.16658 * 3 2 1 27 27 H 1.09001 * 109.47043 * 245.16551 * 3 2 1 28 28 H 1.09002 * 109.47182 * 30.00477 * 5 4 3 29 29 H 1.09004 * 109.46842 * 150.00481 * 5 4 3 30 30 H 0.96996 * 120.00150 * 179.97438 * 9 8 6 31 31 H 1.08004 * 126.06522 * 179.70184 * 19 17 16 32 32 H 1.09000 * 109.47133 * 274.90552 * 22 21 20 33 33 H 1.08996 * 109.47420 * 34.90709 * 22 21 20 34 34 H 1.09004 * 109.46873 * 154.90958 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9967 1.3302 1.1290 5 6 2.5354 1.7612 2.4511 6 6 2.7239 3.2501 2.5881 7 1 3.1447 3.8185 1.7719 8 6 2.3580 3.8868 3.7551 9 7 1.8451 3.1948 4.7488 10 14 2.5923 5.7323 3.9251 11 1 1.3705 6.4319 3.4529 12 1 2.8371 6.0709 5.3501 13 1 3.7554 6.1611 3.1076 14 6 4.2795 0.9568 0.9516 15 8 5.0310 0.8898 1.9057 16 6 4.7706 0.6306 -0.3956 17 6 4.9330 -0.6336 -0.9381 18 35 4.5711 -2.2932 -0.1071 19 6 5.4269 -0.4214 -2.2283 20 7 5.5293 0.8700 -2.4118 21 7 5.1591 1.5139 -1.3640 22 6 5.1533 2.9725 -1.2276 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3588 2.1315 0.0925 27 1 2.6190 1.4040 -0.9326 28 1 1.4793 1.5166 2.5650 29 1 3.1121 1.2496 3.2217 30 1 1.5881 3.6426 5.5699 31 1 5.6773 -1.1876 -2.9472 32 1 6.1418 3.3125 -0.9187 33 1 4.8958 3.4259 -2.1848 34 1 4.4179 3.2644 -0.4777 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295473673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:32 Heat of formation + Delta-G solvation = 55.438449 kcal Electronic energy + Delta-G solvation = -20359.861871 eV Core-core repulsion = 17148.197507 eV Total energy + Delta-G solvation = -3211.664364 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.74134 -40.61992 -37.41402 -35.14362 -34.76737 -33.79926 -32.96036 -31.12836 -29.47136 -28.01985 -27.08511 -25.63213 -23.09161 -22.59747 -21.19087 -20.20924 -18.89016 -18.56391 -17.93199 -17.03025 -16.87435 -16.24008 -16.15674 -15.81281 -15.17672 -14.85541 -14.44634 -14.29413 -14.10865 -14.01968 -13.56269 -13.38068 -13.09006 -12.95757 -12.59008 -12.46597 -12.33564 -12.24738 -12.10500 -11.71022 -11.21990 -11.15621 -10.64525 -10.47677 -10.28124 -9.83666 -9.67024 -8.23150 -6.38182 0.29472 0.42686 1.07411 1.25763 1.38565 1.39781 1.42080 1.51678 1.75172 2.17710 2.40711 3.07990 3.26476 3.44055 3.90435 4.03109 4.09812 4.17015 4.24816 4.28432 4.34593 4.49276 4.70663 4.92388 5.01476 5.09004 5.19151 5.39553 5.50758 5.67866 5.71044 5.85658 6.00509 6.41920 6.68643 6.78647 7.01578 7.32983 8.84942 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.005058 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.687917 B = 5534.434592 C = 6062.444017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.192 4.192 3 C 0.138 3.862 4 N -0.575 5.575 5 C 0.265 3.735 6 C -0.545 4.545 7 H 0.063 0.937 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.967 3.033 11 H -0.264 1.264 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.579 3.421 15 O -0.564 6.564 16 C 0.009 3.991 17 C -0.184 4.184 18 Br 0.000 7.000 19 C 0.046 3.954 20 N -0.279 5.279 21 N -0.265 5.265 22 C 0.075 3.925 23 H 0.106 0.894 24 H 0.118 0.882 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.029 0.971 29 H 0.003 0.997 30 H 0.267 0.733 31 H 0.229 0.771 32 H 0.099 0.901 33 H 0.134 0.866 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.737 -6.914 -16.856 18.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.212 4.212 3 C 0.016 3.984 4 N -0.304 5.304 5 C 0.144 3.856 6 C -0.583 4.583 7 H 0.081 0.919 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.791 3.209 11 H -0.189 1.189 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.363 3.637 15 O -0.442 6.442 16 C -0.124 4.124 17 C -0.275 4.275 18 Br 0.084 6.916 19 C -0.133 4.133 20 N -0.110 5.110 21 N -0.053 5.053 22 C -0.064 4.064 23 H 0.124 0.876 24 H 0.136 0.864 25 H 0.124 0.876 26 H 0.110 0.890 27 H 0.101 0.899 28 H 0.047 0.953 29 H 0.021 0.979 30 H 0.076 0.924 31 H 0.245 0.755 32 H 0.117 0.883 33 H 0.153 0.847 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.223 -6.505 -16.633 17.997 hybrid contribution -0.040 0.466 1.194 1.282 sum 2.183 -6.039 -15.439 16.721 Atomic orbital electron populations 1.24065 0.95070 1.03221 0.97227 1.23274 0.97057 0.98007 1.02816 1.20767 0.92431 0.97107 0.88070 1.48155 1.08182 1.61682 1.12355 1.18869 0.94180 0.94242 0.78284 1.21646 1.42516 0.93070 1.01062 0.91911 1.25831 0.94426 1.03529 0.95000 1.70054 1.42874 1.37977 1.05629 0.85426 0.79038 0.79060 0.77389 1.18913 1.21124 1.19114 1.17251 0.82739 0.77579 0.86091 1.90809 1.57119 1.53770 1.42520 1.21407 1.07706 0.91030 0.92228 1.22474 1.15524 0.90878 0.98620 1.96633 1.94397 1.19930 1.80682 1.24023 1.01477 0.92920 0.94830 1.73213 1.20090 1.07218 1.10449 1.45915 1.44029 1.08421 1.06890 1.22589 1.05631 0.71355 1.06830 0.87622 0.86383 0.87591 0.89036 0.89902 0.95330 0.97898 0.92368 0.75472 0.88253 0.84734 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 14.32 67.78 0.97 -2.98 16 2 C -0.19 -5.70 9.84 25.65 0.25 -5.45 16 3 C 0.14 4.53 5.80 85.63 0.50 5.03 16 4 N -0.57 -24.22 2.44 -834.79 -2.04 -26.26 16 5 C 0.26 13.78 5.22 85.63 0.45 14.22 16 6 C -0.54 -29.43 9.39 25.60 0.24 -29.19 16 7 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 8 C 0.01 0.65 5.46 84.66 0.46 1.11 16 9 N -0.93 -54.17 13.29 21.45 0.28 -53.89 16 10 Si 0.97 42.43 29.54 68.60 2.03 44.46 16 11 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 12 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 13 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 14 C 0.58 24.95 6.72 86.56 0.58 25.53 16 15 O -0.56 -29.77 16.66 -4.17 -0.07 -29.84 16 16 C 0.01 0.33 4.81 40.76 0.20 0.52 16 17 C -0.18 -5.53 6.76 22.71 0.15 -5.37 16 18 Br 0.00 0.00 33.95 -20.37 -0.69 -0.69 16 19 C 0.05 1.12 12.03 85.21 1.03 2.15 16 20 N -0.28 -7.37 11.90 -57.08 -0.68 -8.04 16 21 N -0.27 -7.65 3.54 -355.95 -1.26 -8.91 16 22 C 0.07 1.72 11.22 127.77 1.43 3.16 16 23 H 0.11 2.49 7.84 -2.91 -0.02 2.47 16 24 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 25 H 0.11 3.21 8.03 -2.91 -0.02 3.19 16 26 H 0.09 2.94 7.76 -2.39 -0.02 2.92 16 27 H 0.08 2.44 6.45 -2.39 -0.02 2.43 16 28 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 29 H 0.00 0.18 7.36 -2.38 -0.02 0.16 16 30 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 31 H 0.23 3.56 8.06 -2.91 -0.02 3.54 16 32 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.09 2.32 7.66 -2.39 -0.02 2.30 16 Total: -1.00 -69.75 325.88 4.94 -64.81 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.11 Total: 9.65 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 6.26 Total: 8.71 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -3.69 Total: -97.11 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.07 Total: -29.84 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.69 Total: -0.69 kcal Total: -69.75 4.94 -64.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295473673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.251 kcal (2) G-P(sol) polarization free energy of solvation -69.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds