Wall clock time and date at job start Tue Mar 31 2020 14:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47106 * 2 1 4 4 C 1.50700 * 109.47186 * 240.00272 * 2 1 3 5 5 H 1.07994 * 120.00148 * 240.00060 * 4 2 1 6 6 C 1.37881 * 120.00026 * 59.99298 * 4 2 1 7 7 N 1.31516 * 120.00087 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99833 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47189 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46885 * 120.00609 * 8 6 4 11 11 H 1.48503 * 109.47179 * 240.00073 * 8 6 4 12 12 N 1.46500 * 109.47541 * 119.99997 * 2 1 3 13 13 C 1.46498 * 119.99567 * 59.99999 * 12 2 1 14 14 C 1.34766 * 120.00261 * 240.00282 * 12 2 1 15 15 O 1.21582 * 120.00288 * 359.97438 * 14 12 2 16 16 N 1.34777 * 120.00212 * 180.02562 * 14 12 2 17 17 C 1.39545 * 120.00080 * 174.72155 * 16 14 12 18 18 C 1.39443 * 120.85252 * 327.29289 * 17 16 14 19 19 C 1.37900 * 119.09959 * 179.75680 * 18 17 16 20 20 N 1.32004 * 120.84716 * 0.52983 * 19 18 17 21 21 C 1.32030 * 121.88236 * 359.74585 * 20 19 18 22 22 Br 1.89092 * 119.59428 * 180.02562 * 21 20 19 23 23 C 1.38095 * 120.81262 * 359.96931 * 21 20 19 24 24 H 1.08998 * 109.46600 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46805 * 299.99729 * 1 2 3 26 26 H 1.08996 * 109.47354 * 60.00014 * 1 2 3 27 27 H 0.96993 * 119.99964 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47581 * 90.00382 * 13 12 2 29 29 H 1.09003 * 109.46976 * 210.00007 * 13 12 2 30 30 H 1.08998 * 109.47798 * 329.99806 * 13 12 2 31 31 H 0.96997 * 119.99965 * 354.71261 * 16 14 12 32 32 H 1.08004 * 120.45199 * 0.02562 * 18 17 16 33 33 H 1.08003 * 119.57834 * 180.29374 * 19 18 17 34 34 H 1.07991 * 120.46825 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1455 -2.2875 -3.6038 10 1 1.1660 -1.5866 -4.8161 11 1 3.1465 -0.1872 -4.8166 12 7 2.0185 -0.6906 1.1961 13 6 1.6646 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.0873 1.1283 1.8907 16 7 3.2430 -0.6711 3.1834 17 6 4.1336 -0.0293 4.0449 18 6 5.0709 0.8804 3.5565 19 6 5.9303 1.4977 4.4408 20 7 5.8803 1.2293 5.7322 21 6 5.0115 0.3704 6.2329 22 35 4.9962 0.0350 8.0937 23 6 4.1130 -0.2852 5.4143 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.7093 1.1618 -3.4844 28 1 2.4158 -2.7377 0.9716 29 1 1.6240 -2.2852 2.5001 30 1 0.6906 -2.3003 0.9846 31 1 2.9476 -1.5746 3.3764 32 1 5.1202 1.1017 2.5005 33 1 6.6561 2.2071 4.0715 34 1 3.4045 -0.9863 5.8298 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297594505.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:32 Heat of formation + Delta-G solvation = 22.428419 kcal Electronic energy + Delta-G solvation = -19636.766836 eV Core-core repulsion = 16423.671050 eV Total energy + Delta-G solvation = -3213.095786 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.81198 -39.33385 -35.99307 -34.94160 -33.01989 -32.48759 -30.91787 -29.73564 -29.09614 -26.40646 -25.31012 -23.61927 -23.56383 -21.24399 -19.49441 -18.26489 -17.28898 -16.45067 -16.29207 -15.92690 -15.35713 -14.91715 -14.55356 -14.34503 -14.05171 -13.73126 -13.33551 -12.86812 -12.73607 -12.00645 -11.80395 -11.66066 -11.24919 -11.15305 -10.93157 -10.83128 -10.71573 -10.60429 -10.34187 -10.26322 -9.95203 -9.47284 -9.24932 -9.05136 -8.61178 -8.52225 -7.76610 -6.16199 -4.24644 0.87263 1.09607 1.22357 2.86247 3.20457 3.29064 3.31553 3.41984 3.77697 4.18902 4.35480 4.42817 4.82948 4.92849 5.12411 5.15980 5.33968 5.43335 5.61037 5.84408 5.97775 6.10460 6.24688 6.55300 6.68292 6.72585 6.84963 6.99082 7.29558 7.56779 7.64926 7.68298 7.93349 8.08368 8.41410 8.74579 8.95548 9.42414 10.89214 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.033869 B = 0.002705 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.508199 B =10349.077308 C =10631.200219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.271 3.729 3 H 0.066 0.934 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.598 5.598 13 C 0.085 3.915 14 C 0.696 3.304 15 O -0.573 6.573 16 N -0.689 5.689 17 C 0.235 3.765 18 C -0.161 4.161 19 C 0.125 3.875 20 N -0.484 5.484 21 C 0.142 3.858 22 Br -0.016 7.016 23 C -0.181 4.181 24 H 0.031 0.969 25 H 0.012 0.988 26 H 0.096 0.904 27 H 0.264 0.736 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.408 0.592 32 H 0.159 0.841 33 H 0.167 0.833 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.579 -5.317 18.150 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.332 5.332 13 C -0.060 4.060 14 C 0.397 3.603 15 O -0.450 6.450 16 N -0.338 5.338 17 C 0.128 3.872 18 C -0.184 4.184 19 C -0.032 4.032 20 N -0.196 5.196 21 C -0.075 4.075 22 Br 0.068 6.932 23 C -0.207 4.207 24 H 0.050 0.950 25 H 0.031 0.969 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.246 0.754 32 H 0.176 0.824 33 H 0.184 0.816 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.179 -4.090 18.955 20.352 hybrid contribution -0.541 -1.374 -1.773 2.307 sum 5.639 -5.465 17.182 18.891 Atomic orbital electron populations 1.22130 0.98079 0.99468 1.01063 1.18973 0.90789 0.94345 0.78740 0.91583 1.21335 1.32035 1.13141 0.90157 0.92170 1.24889 0.94878 0.94959 0.99005 1.69880 1.36227 1.22510 1.23833 0.86417 0.78618 0.79568 0.82644 1.19826 1.20897 1.20839 1.47674 1.50518 1.11618 1.23398 1.21558 1.02505 0.83308 0.98582 1.15975 0.79936 0.84968 0.79388 1.90904 1.62548 1.15125 1.76417 1.42992 1.47316 1.18822 1.24681 1.17680 0.88318 0.92885 0.88339 1.22450 0.94085 0.98272 1.03614 1.22660 0.96787 0.96786 0.86952 1.67423 1.21667 1.14899 1.15623 1.22298 0.95744 0.97205 0.92300 1.96741 1.98296 1.94249 1.03935 1.21585 1.02414 1.05148 0.91562 0.95017 0.96869 0.88545 0.92609 0.92871 0.93652 0.90092 0.75428 0.82377 0.81556 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.95 37.16 0.33 -3.05 16 2 C 0.27 6.57 2.64 -69.08 -0.18 6.39 16 3 H 0.07 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.53 -13.62 8.37 -34.44 -0.29 -13.91 16 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.24 11.32 55.43 0.63 -23.61 16 8 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.60 -11.84 2.75 -181.01 -0.50 -12.33 16 13 C 0.08 1.26 9.49 59.85 0.57 1.83 16 14 C 0.70 13.52 8.05 -86.93 -0.70 12.82 16 15 O -0.57 -13.25 13.37 5.29 0.07 -13.18 16 16 N -0.69 -10.05 5.23 -14.07 -0.07 -10.12 16 17 C 0.23 3.37 6.33 -83.49 -0.53 2.84 16 18 C -0.16 -2.39 8.73 -39.26 -0.34 -2.74 16 19 C 0.13 1.65 11.17 -17.60 -0.20 1.45 16 20 N -0.48 -6.77 10.32 -11.73 -0.12 -6.89 16 21 C 0.14 1.85 7.16 -17.52 -0.13 1.72 16 22 Br -0.02 -0.17 33.86 -68.01 -2.30 -2.48 16 23 C -0.18 -2.23 9.78 -39.23 -0.38 -2.61 16 24 H 0.03 0.65 6.66 -51.93 -0.35 0.31 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.49 6.29 -51.93 -0.33 0.17 16 30 H 0.08 1.23 6.43 -51.93 -0.33 0.90 16 31 H 0.41 4.57 6.51 -40.82 -0.27 4.31 16 32 H 0.16 2.63 6.48 -52.48 -0.34 2.29 16 33 H 0.17 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 307.37 15.07 4.63 4.63 Total: -1.00 -30.14 307.37 -8.14 -38.28 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.51 Total: 4.01 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -1.94 Total: 6.37 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.07 Total: -52.96 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.07 Total: -13.18 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -2.30 Total: -2.48 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.14 -8.14 -38.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297594505.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.706 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds