Wall clock time and date at job start Tue Mar 31 2020 14:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47106 * 2 1 4 4 C 1.50700 * 109.47186 * 240.00272 * 2 1 3 5 5 H 1.07994 * 120.00148 * 240.00060 * 4 2 1 6 6 C 1.37881 * 120.00026 * 59.99298 * 4 2 1 7 7 N 1.31516 * 120.00087 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99833 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47189 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46885 * 120.00609 * 8 6 4 11 11 H 1.48503 * 109.47179 * 240.00073 * 8 6 4 12 12 N 1.46500 * 109.47541 * 119.99997 * 2 1 3 13 13 C 1.46498 * 119.99567 * 59.99999 * 12 2 1 14 14 C 1.34766 * 120.00261 * 240.00282 * 12 2 1 15 15 O 1.21582 * 120.00288 * 359.97438 * 14 12 2 16 16 N 1.34777 * 120.00212 * 180.02562 * 14 12 2 17 17 C 1.39545 * 120.00080 * 174.72155 * 16 14 12 18 18 C 1.39443 * 120.85252 * 327.29289 * 17 16 14 19 19 C 1.37900 * 119.09959 * 179.75680 * 18 17 16 20 20 N 1.32004 * 120.84716 * 0.52983 * 19 18 17 21 21 C 1.32030 * 121.88236 * 359.74585 * 20 19 18 22 22 Br 1.89092 * 119.59428 * 180.02562 * 21 20 19 23 23 C 1.38095 * 120.81262 * 359.96931 * 21 20 19 24 24 H 1.08998 * 109.46600 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46805 * 299.99729 * 1 2 3 26 26 H 1.08996 * 109.47354 * 60.00014 * 1 2 3 27 27 H 0.96993 * 119.99964 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47581 * 90.00382 * 13 12 2 29 29 H 1.09003 * 109.46976 * 210.00007 * 13 12 2 30 30 H 1.08998 * 109.47798 * 329.99806 * 13 12 2 31 31 H 0.96997 * 119.99965 * 354.71261 * 16 14 12 32 32 H 1.08004 * 120.45199 * 0.02562 * 18 17 16 33 33 H 1.08003 * 119.57834 * 180.29374 * 19 18 17 34 34 H 1.07991 * 120.46825 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1455 -2.2875 -3.6038 10 1 1.1660 -1.5866 -4.8161 11 1 3.1465 -0.1872 -4.8166 12 7 2.0185 -0.6906 1.1961 13 6 1.6646 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.0873 1.1283 1.8907 16 7 3.2430 -0.6711 3.1834 17 6 4.1336 -0.0293 4.0449 18 6 5.0709 0.8804 3.5565 19 6 5.9303 1.4977 4.4408 20 7 5.8803 1.2293 5.7322 21 6 5.0115 0.3704 6.2329 22 35 4.9962 0.0350 8.0937 23 6 4.1130 -0.2852 5.4143 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.7093 1.1618 -3.4844 28 1 2.4158 -2.7377 0.9716 29 1 1.6240 -2.2852 2.5001 30 1 0.6906 -2.3003 0.9846 31 1 2.9476 -1.5746 3.3764 32 1 5.1202 1.1017 2.5005 33 1 6.6561 2.2071 4.0715 34 1 3.4045 -0.9863 5.8298 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297594505.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:32 Heat of formation + Delta-G solvation = 3.312603 kcal Electronic energy + Delta-G solvation = -19637.595760 eV Core-core repulsion = 16423.671050 eV Total energy + Delta-G solvation = -3213.924710 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.06147 -40.62834 -37.54610 -36.37617 -34.82908 -33.49362 -32.30670 -30.76113 -30.68174 -27.75584 -27.28446 -24.87723 -24.66960 -22.78065 -20.97801 -19.59567 -18.70362 -18.22813 -17.50210 -17.19599 -16.84481 -16.36397 -16.11121 -15.47173 -15.29170 -15.00214 -14.72918 -14.47087 -14.19779 -13.48915 -13.15478 -13.08814 -12.96458 -12.73787 -12.63242 -12.32697 -12.17015 -12.11447 -11.83474 -11.51719 -11.35455 -11.16092 -10.69775 -10.52877 -10.07313 -9.86906 -9.31424 -8.14846 -6.30951 -0.17202 0.00018 0.24105 1.41780 1.43304 1.52174 1.57590 2.02936 2.41212 2.62191 2.90860 3.14050 3.46242 3.78903 3.90668 4.00069 4.28450 4.41948 4.54897 4.60104 4.73647 4.88123 4.91904 5.00248 5.04764 5.13094 5.38811 5.49600 5.56984 5.64908 5.92894 6.10895 6.17236 6.64071 6.76335 6.94504 7.34036 7.49871 8.89658 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.033869 B = 0.002705 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.508199 B =10349.077308 C =10631.200219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.278 3.722 3 H 0.014 0.986 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.287 1.287 12 N -0.606 5.606 13 C 0.079 3.921 14 C 0.693 3.307 15 O -0.619 6.619 16 N -0.668 5.668 17 C 0.218 3.782 18 C -0.178 4.178 19 C 0.129 3.871 20 N -0.495 5.495 21 C 0.130 3.870 22 Br 0.008 6.992 23 C -0.165 4.165 24 H 0.050 0.950 25 H 0.020 0.980 26 H 0.069 0.931 27 H 0.264 0.736 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.426 0.574 32 H 0.134 0.866 33 H 0.191 0.809 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.787 -7.363 19.637 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.176 3.824 3 H 0.032 0.968 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.213 1.213 12 N -0.339 5.339 13 C -0.064 4.064 14 C 0.395 3.605 15 O -0.499 6.499 16 N -0.319 5.319 17 C 0.112 3.888 18 C -0.201 4.201 19 C -0.028 4.028 20 N -0.208 5.208 21 C -0.087 4.087 22 Br 0.092 6.908 23 C -0.191 4.191 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.267 0.733 32 H 0.152 0.848 33 H 0.207 0.793 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.392 -6.203 20.501 22.352 hybrid contribution -0.560 -0.718 -2.103 2.291 sum 5.832 -6.921 18.398 20.504 Atomic orbital electron populations 1.21918 0.97027 1.00341 1.00088 1.18517 0.91487 0.92087 0.80343 0.96817 1.21594 1.31873 1.13087 0.90990 0.92020 1.25692 0.95083 0.95610 1.01922 1.70019 1.37297 1.23827 1.24409 0.85425 0.78170 0.78486 0.79021 1.18922 1.20126 1.21285 1.47496 1.50724 1.13383 1.22315 1.21839 1.02467 0.80300 1.01762 1.16089 0.79678 0.84512 0.80226 1.90876 1.64006 1.17358 1.77631 1.42563 1.46855 1.19325 1.23175 1.17849 0.88387 0.93397 0.89175 1.22376 0.95500 0.99490 1.02784 1.22967 0.96647 0.96613 0.86585 1.67515 1.22186 1.15378 1.15718 1.22707 0.95503 0.96869 0.93648 1.96765 1.98225 1.94040 1.01806 1.21790 1.02245 1.04786 0.90263 0.93071 0.96055 0.91254 0.92626 0.92245 0.89101 0.90237 0.73273 0.84825 0.79261 0.80773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.19 8.95 71.98 0.64 -5.55 16 2 C 0.28 13.75 2.64 44.25 0.12 13.86 16 3 H 0.01 0.83 6.90 -2.39 -0.02 0.81 16 4 C -0.54 -27.93 8.37 25.60 0.21 -27.71 16 5 H 0.06 3.12 7.65 -2.91 -0.02 3.09 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -51.33 11.32 21.45 0.24 -51.08 16 8 Si 0.96 41.76 29.54 68.60 2.03 43.79 16 9 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 10 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 12 N -0.61 -23.74 2.75 -844.86 -2.33 -26.07 16 13 C 0.08 2.15 9.49 127.77 1.21 3.36 16 14 C 0.69 26.99 8.05 179.06 1.44 28.43 16 15 O -0.62 -29.75 13.37 -3.97 -0.05 -29.80 16 16 N -0.67 -18.48 5.23 -316.70 -1.66 -20.13 16 17 C 0.22 5.99 6.33 38.47 0.24 6.23 16 18 C -0.18 -5.33 8.73 22.48 0.20 -5.13 16 19 C 0.13 3.31 11.17 84.59 0.94 4.26 16 20 N -0.50 -13.14 10.32 -191.02 -1.97 -15.11 16 21 C 0.13 3.10 7.16 84.63 0.61 3.71 16 22 Br 0.01 0.15 33.86 -20.37 -0.69 -0.54 16 23 C -0.17 -3.66 9.78 22.50 0.22 -3.44 16 24 H 0.05 2.09 6.66 -2.39 -0.02 2.07 16 25 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 3.58 6.07 -2.39 -0.01 3.56 16 27 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.09 1.63 6.29 -2.39 -0.02 1.61 16 30 H 0.08 2.22 6.43 -2.39 -0.02 2.21 16 31 H 0.43 8.23 6.51 -92.71 -0.60 7.63 16 32 H 0.13 4.69 6.48 -2.91 -0.02 4.67 16 33 H 0.19 3.73 8.06 -2.91 -0.02 3.70 16 34 H 0.17 2.69 8.06 -2.92 -0.02 2.67 16 Total: -1.00 -67.26 307.37 2.40 -64.86 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.54 Total: 14.72 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 6.29 Total: 19.36 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -5.71 Total: -112.39 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.05 Total: -29.80 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 35 Polarization: 0.15 SS G_CDS: -0.69 Total: -0.54 kcal Total: -67.26 2.40 -64.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297594505.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.168 kcal (2) G-P(sol) polarization free energy of solvation -67.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds