Wall clock time and date at job start Tue Mar 31 2020 14:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47234 * 2 1 4 4 C 1.50695 * 109.47262 * 120.00371 * 2 1 3 5 5 H 1.08001 * 119.99617 * 119.99588 * 4 2 1 6 6 C 1.37878 * 120.00313 * 300.00132 * 4 2 1 7 7 N 1.31509 * 120.00301 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99574 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47441 * 90.00020 * 8 6 4 10 10 H 1.48504 * 109.46851 * 209.99858 * 8 6 4 11 11 H 1.48500 * 109.47234 * 329.99726 * 8 6 4 12 12 N 1.46507 * 109.46968 * 240.00541 * 2 1 3 13 13 C 1.34779 * 119.99642 * 85.00055 * 12 2 1 14 14 O 1.21637 * 120.00327 * 359.97438 * 13 12 2 15 15 C 1.47067 * 119.99309 * 179.97438 * 13 12 2 16 16 N 1.36699 * 126.90284 * 0.02562 * 15 13 12 17 17 H 0.97004 * 125.19183 * 359.96580 * 16 15 13 18 18 N 1.28437 * 109.62789 * 179.97438 * 16 15 13 19 19 C 1.30844 * 110.96893 * 0.02562 * 18 16 15 20 20 C 1.50700 * 126.06632 * 179.73511 * 19 18 16 21 21 C 1.52998 * 117.49818 * 8.77226 * 20 19 18 22 22 C 1.52991 * 117.49945 * 300.11204 * 20 19 18 23 23 C 1.38514 * 126.89816 * 180.02562 * 15 13 12 24 24 Br 1.89106 * 127.33139 * 0.02562 * 23 15 13 25 25 H 1.08997 * 109.47147 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47048 * 299.99595 * 1 2 3 27 27 H 1.08999 * 109.47233 * 59.99525 * 1 2 3 28 28 H 0.97000 * 120.00103 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99882 * 264.99910 * 12 2 1 30 30 H 1.09000 * 115.54636 * 154.43853 * 20 19 18 31 31 H 1.09002 * 117.49918 * 0.02562 * 21 20 19 32 32 H 1.08998 * 117.49930 * 145.01898 * 21 20 19 33 33 H 1.09004 * 117.50216 * 214.98143 * 22 20 19 34 34 H 1.09002 * 117.50412 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 2.1373 -0.8599 3.5564 8 14 0.6248 1.2787 2.6542 9 1 -0.8028 0.8723 2.6998 10 1 0.9759 1.9947 3.9070 11 1 0.8470 2.1763 1.4922 12 7 2.0183 -0.6905 -1.1963 13 6 2.1470 -0.0180 -2.3572 14 8 1.8573 1.1621 -2.4118 15 6 2.6377 -0.7111 -3.5579 16 7 3.0012 -2.0252 -3.6561 17 1 2.9778 -2.6676 -2.9296 18 7 3.3787 -2.2798 -4.8571 19 6 3.3000 -1.2119 -5.6090 20 6 3.6634 -1.1260 -7.0690 21 6 3.9750 -2.4348 -7.7975 22 6 5.1048 -1.4591 -7.4590 23 6 2.8245 -0.1634 -4.8164 24 35 2.5045 1.6228 -5.3487 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.9027 -0.5288 4.4375 29 1 2.2490 -1.6317 -1.1528 30 1 3.1570 -0.3436 -7.6342 31 1 3.9168 -3.3580 -7.2210 32 1 3.6741 -2.5133 -8.8422 33 1 5.5467 -0.8960 -8.2810 34 1 5.7905 -1.7399 -6.6595 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299693492.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:38 Heat of formation + Delta-G solvation = 68.724183 kcal Electronic energy + Delta-G solvation = -19474.438800 eV Core-core repulsion = 16263.350549 eV Total energy + Delta-G solvation = -3211.088251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.75020 -39.03396 -37.29738 -35.24927 -32.73598 -32.38833 -31.38864 -29.94491 -29.19281 -25.32111 -24.48246 -23.43550 -22.51224 -20.85671 -20.43976 -19.51394 -19.03149 -16.76332 -16.06384 -15.92792 -15.71808 -15.42359 -14.77972 -14.29327 -14.00880 -13.63386 -13.28285 -13.02530 -12.31025 -12.28665 -11.94220 -11.71889 -11.59013 -11.44377 -11.34353 -10.94443 -10.90145 -10.54608 -10.29283 -10.13667 -9.75917 -9.38183 -9.36542 -9.18848 -8.88395 -8.78343 -8.37293 -6.30299 -4.34504 1.10791 1.64627 2.12426 2.74662 3.17568 3.30400 3.33630 3.43530 3.47011 3.76128 4.23597 4.28651 4.46174 4.70493 4.80237 4.87907 5.04559 5.20813 5.36554 5.47540 5.60954 5.90826 5.97085 5.98229 6.18932 6.25486 6.42908 6.68062 6.74322 6.99552 7.08472 7.35690 7.70367 7.93975 8.30224 8.52647 8.67584 9.29054 10.81553 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.022622 B = 0.003867 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.429576 B = 7239.441377 C = 8192.211649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.239 3.761 3 H 0.054 0.946 4 C -0.540 4.540 5 H 0.080 0.920 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.260 1.260 12 N -0.693 5.693 13 C 0.569 3.431 14 O -0.510 6.510 15 C 0.017 3.983 16 N -0.368 5.368 17 H 0.452 0.548 18 N -0.266 5.266 19 C 0.089 3.911 20 C -0.081 4.081 21 C -0.164 4.164 22 C -0.162 4.162 23 C -0.141 4.141 24 Br 0.014 6.986 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.269 0.731 29 H 0.389 0.611 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.351 -1.083 -21.401 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.136 3.864 3 H 0.072 0.928 4 C -0.578 4.578 5 H 0.098 0.902 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.714 3.286 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.185 1.185 12 N -0.342 5.342 13 C 0.351 3.649 14 O -0.384 6.384 15 C -0.116 4.116 16 N -0.084 5.084 17 H 0.299 0.701 18 N -0.099 5.099 19 C -0.071 4.071 20 C -0.101 4.101 21 C -0.201 4.201 22 C -0.200 4.200 23 C -0.233 4.233 24 Br 0.098 6.902 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.222 0.778 30 H 0.144 0.856 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.297 -0.672 -21.369 21.502 hybrid contribution -0.675 0.251 0.997 1.230 sum 1.622 -0.421 -20.372 20.441 Atomic orbital electron populations 1.22464 0.98918 1.01040 0.99673 1.19204 0.90358 0.94808 0.82014 0.92795 1.20972 1.33745 1.14633 0.88465 0.90213 1.24813 0.95394 0.96723 0.95440 1.69854 1.44572 1.40014 0.98128 0.86878 0.80515 0.83496 0.77677 1.20196 1.22011 1.18492 1.46152 1.64913 1.13417 1.09712 1.16945 0.79584 0.86755 0.81615 1.90874 1.49729 1.13995 1.83765 1.21968 1.06816 0.85782 0.96989 1.43544 1.46878 1.08645 1.09347 0.70135 1.73051 1.19470 1.25909 0.91425 1.20872 1.02629 0.88061 0.95519 1.20230 1.00294 1.01415 0.88112 1.22992 1.02397 0.93919 1.00789 1.23020 0.90630 1.02956 1.03364 1.22118 1.12522 0.94672 0.93972 1.96650 1.95030 1.08608 1.89899 0.92746 0.93145 0.94270 0.92125 0.77763 0.85553 0.87897 0.88292 0.88071 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.96 37.16 0.33 -3.14 16 2 C 0.24 5.42 2.15 -69.08 -0.15 5.27 16 3 H 0.05 1.35 6.64 -51.93 -0.34 1.00 16 4 C -0.54 -13.98 9.31 -34.44 -0.32 -14.30 16 5 H 0.08 2.16 7.98 -52.49 -0.42 1.74 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -25.61 13.96 55.43 0.77 -24.84 16 8 Si 0.88 21.10 24.37 -169.99 -4.14 16.95 16 9 H -0.28 -6.35 6.87 56.52 0.39 -5.96 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.26 -6.14 6.53 56.52 0.37 -5.78 16 12 N -0.69 -12.92 5.07 -56.12 -0.28 -13.20 16 13 C 0.57 10.56 7.77 -12.68 -0.10 10.46 16 14 O -0.51 -10.96 15.21 5.24 0.08 -10.88 16 15 C 0.02 0.27 7.16 -82.02 -0.59 -0.32 16 16 N -0.37 -4.67 6.85 33.49 0.23 -4.44 16 17 H 0.45 4.36 8.22 -190.45 -1.57 2.80 16 18 N -0.27 -3.48 11.73 33.65 0.39 -3.09 16 19 C 0.09 1.18 6.75 -82.44 -0.56 0.62 16 20 C -0.08 -0.83 6.14 -91.78 -0.56 -1.39 16 21 C -0.16 -1.39 10.15 -26.70 -0.27 -1.66 16 22 C -0.16 -1.39 10.24 -26.70 -0.27 -1.67 16 23 C -0.14 -2.14 6.73 -38.91 -0.26 -2.40 16 24 Br 0.01 0.21 32.52 -68.01 -2.21 -2.00 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.39 6.10 7.72 -40.82 -0.32 5.78 16 30 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.10 0.95 7.90 -51.93 -0.41 0.54 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 309.91 15.07 4.67 4.67 Total: -1.00 -30.80 309.91 -8.28 -39.08 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.94 Total: 4.19 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.84 Total: -6.44 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 1.11 Total: -45.57 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.14 Total: 16.95 kcal Atomic # 35 Polarization: 0.21 SS G_CDS: -2.21 Total: -2.00 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.80 -8.28 -39.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299693492.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.803 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds