Wall clock time and date at job start Tue Mar 31 2020 14:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47234 * 2 1 4 4 C 1.50695 * 109.47262 * 120.00371 * 2 1 3 5 5 H 1.08001 * 119.99617 * 119.99588 * 4 2 1 6 6 C 1.37878 * 120.00313 * 300.00132 * 4 2 1 7 7 N 1.31509 * 120.00301 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99574 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47441 * 90.00020 * 8 6 4 10 10 H 1.48504 * 109.46851 * 209.99858 * 8 6 4 11 11 H 1.48500 * 109.47234 * 329.99726 * 8 6 4 12 12 N 1.46507 * 109.46968 * 240.00541 * 2 1 3 13 13 C 1.34779 * 119.99642 * 85.00055 * 12 2 1 14 14 O 1.21637 * 120.00327 * 359.97438 * 13 12 2 15 15 C 1.47067 * 119.99309 * 179.97438 * 13 12 2 16 16 N 1.36699 * 126.90284 * 0.02562 * 15 13 12 17 17 H 0.97004 * 125.19183 * 359.96580 * 16 15 13 18 18 N 1.28437 * 109.62789 * 179.97438 * 16 15 13 19 19 C 1.30844 * 110.96893 * 0.02562 * 18 16 15 20 20 C 1.50700 * 126.06632 * 179.73511 * 19 18 16 21 21 C 1.52998 * 117.49818 * 8.77226 * 20 19 18 22 22 C 1.52991 * 117.49945 * 300.11204 * 20 19 18 23 23 C 1.38514 * 126.89816 * 180.02562 * 15 13 12 24 24 Br 1.89106 * 127.33139 * 0.02562 * 23 15 13 25 25 H 1.08997 * 109.47147 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47048 * 299.99595 * 1 2 3 27 27 H 1.08999 * 109.47233 * 59.99525 * 1 2 3 28 28 H 0.97000 * 120.00103 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99882 * 264.99910 * 12 2 1 30 30 H 1.09000 * 115.54636 * 154.43853 * 20 19 18 31 31 H 1.09002 * 117.49918 * 0.02562 * 21 20 19 32 32 H 1.08998 * 117.49930 * 145.01898 * 21 20 19 33 33 H 1.09004 * 117.50216 * 214.98143 * 22 20 19 34 34 H 1.09002 * 117.50412 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 2.1373 -0.8599 3.5564 8 14 0.6248 1.2787 2.6542 9 1 -0.8028 0.8723 2.6998 10 1 0.9759 1.9947 3.9070 11 1 0.8470 2.1763 1.4922 12 7 2.0183 -0.6905 -1.1963 13 6 2.1470 -0.0180 -2.3572 14 8 1.8573 1.1621 -2.4118 15 6 2.6377 -0.7111 -3.5579 16 7 3.0012 -2.0252 -3.6561 17 1 2.9778 -2.6676 -2.9296 18 7 3.3787 -2.2798 -4.8571 19 6 3.3000 -1.2119 -5.6090 20 6 3.6634 -1.1260 -7.0690 21 6 3.9750 -2.4348 -7.7975 22 6 5.1048 -1.4591 -7.4590 23 6 2.8245 -0.1634 -4.8164 24 35 2.5045 1.6228 -5.3487 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.9027 -0.5288 4.4375 29 1 2.2490 -1.6317 -1.1528 30 1 3.1570 -0.3436 -7.6342 31 1 3.9168 -3.3580 -7.2210 32 1 3.6741 -2.5133 -8.8422 33 1 5.5467 -0.8960 -8.2810 34 1 5.7905 -1.7399 -6.6595 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299693492.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:37 Heat of formation + Delta-G solvation = 47.411728 kcal Electronic energy + Delta-G solvation = -19475.362978 eV Core-core repulsion = 16263.350549 eV Total energy + Delta-G solvation = -3212.012429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.84846 -40.56756 -38.05043 -36.98249 -34.55110 -33.57253 -32.79765 -31.35102 -30.46421 -27.25879 -25.52317 -24.76216 -23.17984 -22.34053 -21.76073 -20.78555 -20.25505 -18.59121 -17.57864 -17.15074 -16.91811 -16.52867 -16.30562 -15.68278 -15.31582 -14.91618 -14.78250 -14.73271 -14.13935 -13.73927 -13.28259 -13.06007 -12.82066 -12.63738 -12.45291 -12.30836 -12.16693 -11.86282 -11.65963 -11.36689 -11.31999 -11.23729 -10.89887 -10.78767 -10.31516 -10.01492 -9.83604 -8.39953 -6.46857 -0.13458 0.51732 1.10472 1.28298 1.37187 1.45635 1.67638 2.00205 2.05499 2.25377 2.96809 3.02257 3.29481 3.47910 3.60106 3.98105 4.06472 4.19447 4.42019 4.43841 4.53401 4.65781 4.83788 4.86280 4.96605 5.10892 5.18387 5.24416 5.34598 5.34882 5.48331 5.72855 6.06514 6.50122 6.59815 6.69874 7.03679 7.22941 8.74867 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.022622 B = 0.003867 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.429576 B = 7239.441377 C = 8192.211649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.245 3.755 3 H 0.032 0.968 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.032 3.968 7 N -0.931 5.931 8 Si 0.936 3.064 9 H -0.260 1.260 10 H -0.294 1.294 11 H -0.259 1.259 12 N -0.690 5.690 13 C 0.574 3.426 14 O -0.541 6.541 15 C 0.000 4.000 16 N -0.352 5.352 17 H 0.464 0.536 18 N -0.261 5.261 19 C 0.090 3.910 20 C -0.102 4.102 21 C -0.152 4.152 22 C -0.154 4.154 23 C -0.151 4.151 24 Br 0.015 6.985 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.271 0.729 29 H 0.404 0.596 30 H 0.136 0.864 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.060 -1.327 -23.411 23.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.141 3.859 3 H 0.050 0.950 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.168 4.168 7 N -0.570 5.570 8 Si 0.763 3.237 9 H -0.185 1.185 10 H -0.222 1.222 11 H -0.183 1.183 12 N -0.339 5.339 13 C 0.358 3.642 14 O -0.417 6.417 15 C -0.133 4.133 16 N -0.070 5.070 17 H 0.313 0.687 18 N -0.094 5.094 19 C -0.069 4.069 20 C -0.121 4.121 21 C -0.189 4.189 22 C -0.192 4.192 23 C -0.243 4.243 24 Br 0.099 6.901 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.239 0.761 30 H 0.154 0.846 31 H 0.112 0.888 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.009 -0.958 -23.396 23.501 hybrid contribution -0.495 0.256 1.537 1.635 sum 1.514 -0.702 -21.859 21.922 Atomic orbital electron populations 1.22365 0.97448 1.01938 0.99807 1.18863 0.91401 0.93459 0.82202 0.95029 1.21198 1.32663 1.13789 0.89738 0.92228 1.25516 0.96733 0.99246 0.95322 1.69960 1.46475 1.41851 0.98713 0.86049 0.79809 0.80441 0.77395 1.18521 1.22157 1.18306 1.45890 1.65093 1.14064 1.08891 1.17140 0.78681 0.86373 0.81984 1.90851 1.51063 1.15424 1.84400 1.21470 1.08811 0.87003 0.96023 1.43571 1.45861 1.07875 1.09721 0.68696 1.73085 1.19143 1.25817 0.91380 1.21318 1.01684 0.87167 0.96772 1.20410 1.01927 1.03171 0.86618 1.23069 1.01561 0.92645 1.01625 1.23098 0.89712 1.02866 1.03537 1.22377 1.12554 0.95223 0.94167 1.96638 1.95011 1.08649 1.89779 0.91496 0.93823 0.93229 0.91991 0.76084 0.84627 0.88769 0.85978 0.85887 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.48 8.96 71.98 0.65 -5.83 16 2 C 0.24 10.97 2.15 44.24 0.10 11.07 16 3 H 0.03 1.58 6.64 -2.39 -0.02 1.57 16 4 C -0.54 -27.81 9.31 25.60 0.24 -27.57 16 5 H 0.06 3.26 7.98 -2.91 -0.02 3.24 16 6 C 0.03 1.75 5.45 84.66 0.46 2.21 16 7 N -0.93 -54.26 13.96 21.45 0.30 -53.96 16 8 Si 0.94 43.15 24.37 68.60 1.67 44.82 16 9 H -0.26 -11.24 6.87 99.48 0.68 -10.56 16 10 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.26 -11.76 6.53 99.48 0.65 -11.11 16 12 N -0.69 -25.23 5.07 -449.71 -2.28 -27.51 16 13 C 0.57 20.92 7.77 86.56 0.67 21.59 16 14 O -0.54 -23.08 15.21 -4.15 -0.06 -23.14 16 15 C 0.00 0.00 7.16 40.77 0.29 0.30 16 16 N -0.35 -8.42 6.85 -47.94 -0.33 -8.75 16 17 H 0.46 8.25 8.22 -220.00 -1.81 6.44 16 18 N -0.26 -6.38 11.73 -47.44 -0.56 -6.94 16 19 C 0.09 2.22 6.75 43.08 0.29 2.51 16 20 C -0.10 -1.86 6.14 -11.54 -0.07 -1.93 16 21 C -0.15 -2.15 10.15 30.62 0.31 -1.84 16 22 C -0.15 -2.26 10.24 30.61 0.31 -1.95 16 23 C -0.15 -4.40 6.73 22.71 0.15 -4.25 16 24 Br 0.02 0.43 32.52 -20.37 -0.66 -0.23 16 25 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.04 1.85 3.27 -2.39 -0.01 1.84 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.40 12.31 7.72 -92.71 -0.72 11.60 16 30 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.09 1.52 7.90 -2.39 -0.02 1.51 16 32 H 0.12 1.17 8.14 -2.39 -0.02 1.16 16 33 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -65.19 309.91 0.04 -65.15 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -1.44 Total: 16.24 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 3.40 Total: -5.69 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -2.86 Total: -97.15 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.06 Total: -23.14 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.67 Total: 44.82 kcal Atomic # 35 Polarization: 0.43 SS G_CDS: -0.66 Total: -0.23 kcal Total: -65.19 0.04 -65.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299693492.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.561 kcal (2) G-P(sol) polarization free energy of solvation -65.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds