Wall clock time and date at job start Tue Mar 31 2020 14:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47202 * 2 1 4 4 C 1.50697 * 109.47111 * 239.99402 * 2 1 3 5 5 H 1.07999 * 120.00555 * 275.00987 * 4 2 1 6 6 C 1.37882 * 119.99832 * 95.00377 * 4 2 1 7 7 N 1.31509 * 120.00270 * 184.91651 * 6 4 2 8 8 Si 1.86800 * 119.99843 * 4.91257 * 6 4 2 9 9 H 1.48512 * 109.46754 * 84.83420 * 8 6 4 10 10 H 1.48495 * 109.47236 * 204.83228 * 8 6 4 11 11 H 1.48497 * 109.47630 * 324.83867 * 8 6 4 12 12 N 1.46503 * 109.47044 * 119.99884 * 2 1 3 13 13 C 1.34784 * 119.99799 * 275.00005 * 12 2 1 14 14 O 1.21642 * 119.99981 * 359.97438 * 13 12 2 15 15 C 1.47063 * 119.99703 * 180.02562 * 13 12 2 16 16 N 1.36707 * 126.90240 * 359.68353 * 15 13 12 17 17 H 0.96995 * 125.18612 * 0.02562 * 16 15 13 18 18 N 1.28433 * 109.62105 * 179.81206 * 16 15 13 19 19 C 1.30841 * 110.97530 * 0.47016 * 18 16 15 20 20 C 1.50691 * 126.06591 * 179.73313 * 19 18 16 21 21 C 1.53000 * 117.50063 * 8.59578 * 20 19 18 22 22 C 1.53002 * 117.49958 * 299.97173 * 20 19 18 23 23 C 1.38514 * 126.89734 * 179.97438 * 15 13 12 24 24 Br 1.89101 * 127.33247 * 359.97438 * 23 15 13 25 25 H 1.09000 * 109.47032 * 295.03665 * 1 2 3 26 26 H 1.08999 * 109.47207 * 55.03618 * 1 2 3 27 27 H 1.09002 * 109.47162 * 175.03996 * 1 2 3 28 28 H 0.96996 * 120.00206 * 180.02562 * 7 6 4 29 29 H 0.96997 * 120.00337 * 94.72129 * 12 2 1 30 30 H 1.09002 * 115.54787 * 154.30174 * 20 19 18 31 31 H 1.09001 * 117.49850 * 359.97438 * 21 20 19 32 32 H 1.08998 * 117.50157 * 145.02257 * 21 20 19 33 33 H 1.08998 * 117.49561 * 214.98178 * 22 20 19 34 34 H 1.08995 * 117.49848 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1354 -1.7856 -1.2290 6 6 2.3603 0.0119 -2.3580 7 7 2.7060 -0.6133 -3.4621 8 14 2.3136 1.8789 -2.3175 9 1 3.5993 2.3947 -1.7822 10 1 2.1059 2.3989 -3.6928 11 1 1.1988 2.3274 -1.4451 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0181 2.3572 14 8 1.8582 1.1622 2.4117 15 6 2.6378 -0.7113 3.5578 16 7 2.9961 -2.0268 3.6574 17 1 2.9681 -2.6701 2.9321 18 7 3.3796 -2.2797 4.8568 19 6 3.3001 -1.2121 5.6089 20 6 3.6588 -1.1275 7.0701 21 6 4.3509 -2.3386 7.6989 22 6 2.8916 -2.0293 8.0392 23 6 2.8245 -0.1636 4.8163 24 35 2.5045 1.6225 5.3487 25 1 -0.3633 0.4349 0.9311 26 1 -0.3633 0.5889 -0.8422 27 1 -0.3633 -1.0238 -0.0889 28 1 2.9371 -0.1051 -4.2553 29 1 2.2452 -1.6327 1.1537 30 1 3.9510 -0.1395 7.4260 31 1 4.5463 -3.1966 7.0557 32 1 5.0986 -2.1475 8.4686 33 1 2.6793 -1.6346 9.0328 34 1 2.1271 -2.6833 7.6199 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299693494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:41 Heat of formation + Delta-G solvation = 59.941103 kcal Electronic energy + Delta-G solvation = -19489.752208 eV Core-core repulsion = 16278.283094 eV Total energy + Delta-G solvation = -3211.469114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.72026 -38.96995 -37.28815 -35.12832 -32.68833 -32.36211 -31.37869 -29.87338 -29.10945 -25.43799 -24.45786 -23.32715 -22.49617 -20.74981 -20.31929 -19.50289 -19.02055 -16.94046 -16.08952 -15.78049 -15.70350 -15.41918 -14.66620 -14.05513 -14.03576 -13.61466 -13.31248 -12.61965 -12.51402 -12.25805 -11.71420 -11.64378 -11.55152 -11.35213 -11.20522 -10.95504 -10.89209 -10.69640 -10.52391 -10.08990 -9.94957 -9.39398 -9.33590 -9.16156 -8.82128 -8.76407 -8.31529 -6.33857 -4.39327 1.14441 1.67272 2.14699 2.77625 3.19602 3.28759 3.35273 3.48425 3.53122 3.77468 4.23892 4.30711 4.47842 4.72581 4.81997 4.89319 5.04431 5.26664 5.40270 5.47915 5.62083 5.91679 5.99151 5.99545 6.21225 6.39675 6.55061 6.72154 6.79533 7.02511 7.20416 7.35601 7.73053 7.93701 8.33520 8.58098 8.67188 9.26829 10.77410 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.021072 B = 0.004048 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.451388 B = 6914.735081 C = 7782.021525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.233 3.767 3 H 0.055 0.945 4 C -0.535 4.535 5 H 0.079 0.921 6 C 0.084 3.916 7 N -0.885 5.885 8 Si 0.873 3.127 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.259 1.259 12 N -0.696 5.696 13 C 0.566 3.434 14 O -0.513 6.513 15 C 0.018 3.982 16 N -0.368 5.368 17 H 0.452 0.548 18 N -0.267 5.267 19 C 0.089 3.911 20 C -0.080 4.080 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.143 4.143 24 Br 0.013 6.987 25 H 0.031 0.969 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.269 0.731 29 H 0.387 0.613 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.067 -1.477 20.992 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.131 3.869 3 H 0.073 0.927 4 C -0.573 4.573 5 H 0.097 0.903 6 C -0.122 4.122 7 N -0.521 5.521 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.183 1.183 12 N -0.344 5.344 13 C 0.348 3.652 14 O -0.388 6.388 15 C -0.115 4.115 16 N -0.084 5.084 17 H 0.298 0.702 18 N -0.099 5.099 19 C -0.071 4.071 20 C -0.100 4.100 21 C -0.201 4.201 22 C -0.200 4.200 23 C -0.234 4.234 24 Br 0.097 6.903 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.220 0.780 30 H 0.144 0.856 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.071 -1.039 20.948 21.001 hybrid contribution 0.010 0.477 -0.860 0.983 sum 1.081 -0.562 20.089 20.125 Atomic orbital electron populations 1.22229 0.98167 1.00756 0.99595 1.19229 0.91150 0.94461 0.82040 0.92720 1.20955 1.45881 0.95584 0.94888 0.90311 1.24935 0.93353 0.98795 0.95088 1.69867 1.44084 1.36388 1.01722 0.86902 0.79982 0.85568 0.77591 1.19679 1.21029 1.18304 1.46681 1.64681 1.13378 1.09709 1.17051 0.79622 0.86863 0.81689 1.90865 1.50042 1.14050 1.83821 1.22044 1.06683 0.85707 0.97055 1.43538 1.46857 1.08570 1.09457 0.70153 1.73041 1.19298 1.26079 0.91522 1.20863 1.02584 0.88190 0.95476 1.20228 1.06408 0.97389 0.85999 1.22982 0.95355 0.98893 1.02847 1.23004 0.95359 1.02286 0.99345 1.22114 1.12584 0.94716 0.93991 1.96642 1.95036 1.08674 1.89928 0.94988 0.92569 0.93351 0.92057 0.77994 0.85563 0.87891 0.88287 0.88103 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.47 37.16 0.35 -2.75 16 2 C 0.23 5.26 2.22 -69.08 -0.15 5.11 16 3 H 0.05 1.35 4.73 -51.93 -0.25 1.11 16 4 C -0.54 -13.73 9.05 -34.44 -0.31 -14.04 16 5 H 0.08 2.11 8.06 -52.49 -0.42 1.69 16 6 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 7 N -0.88 -25.27 13.96 55.43 0.77 -24.50 16 8 Si 0.87 20.91 26.99 -169.99 -4.59 16.32 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.26 -6.07 6.82 56.52 0.39 -5.69 16 12 N -0.70 -13.14 5.06 -56.12 -0.28 -13.42 16 13 C 0.57 10.70 7.77 -12.68 -0.10 10.60 16 14 O -0.51 -11.23 15.21 5.24 0.08 -11.15 16 15 C 0.02 0.29 7.16 -82.01 -0.59 -0.30 16 16 N -0.37 -4.78 6.85 33.49 0.23 -4.55 16 17 H 0.45 4.48 8.22 -190.47 -1.57 2.92 16 18 N -0.27 -3.56 11.73 33.65 0.39 -3.17 16 19 C 0.09 1.20 6.75 -82.44 -0.56 0.64 16 20 C -0.08 -0.84 6.15 -91.77 -0.56 -1.41 16 21 C -0.16 -1.42 10.14 -26.73 -0.27 -1.69 16 22 C -0.16 -1.40 10.23 -26.73 -0.27 -1.68 16 23 C -0.14 -2.20 6.73 -38.91 -0.26 -2.47 16 24 Br 0.01 0.20 32.52 -68.01 -2.21 -2.01 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.39 6.15 7.78 -40.82 -0.32 5.84 16 30 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.10 0.98 7.90 -51.93 -0.41 0.57 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -30.62 316.48 -8.73 -39.35 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.07 Total: 4.18 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -2.82 Total: -5.81 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 1.11 Total: -45.64 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.15 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.59 Total: 16.32 kcal Atomic # 35 Polarization: 0.20 SS G_CDS: -2.21 Total: -2.01 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.62 -8.73 -39.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299693494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.289 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds