Wall clock time and date at job start Tue Mar 31 2020 14:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47202 * 2 1 4 4 C 1.50697 * 109.47111 * 239.99402 * 2 1 3 5 5 H 1.07999 * 120.00555 * 275.00987 * 4 2 1 6 6 C 1.37882 * 119.99832 * 95.00377 * 4 2 1 7 7 N 1.31509 * 120.00270 * 184.91651 * 6 4 2 8 8 Si 1.86800 * 119.99843 * 4.91257 * 6 4 2 9 9 H 1.48512 * 109.46754 * 84.83420 * 8 6 4 10 10 H 1.48495 * 109.47236 * 204.83228 * 8 6 4 11 11 H 1.48497 * 109.47630 * 324.83867 * 8 6 4 12 12 N 1.46503 * 109.47044 * 119.99884 * 2 1 3 13 13 C 1.34784 * 119.99799 * 275.00005 * 12 2 1 14 14 O 1.21642 * 119.99981 * 359.97438 * 13 12 2 15 15 C 1.47063 * 119.99703 * 180.02562 * 13 12 2 16 16 N 1.36707 * 126.90240 * 359.68353 * 15 13 12 17 17 H 0.96995 * 125.18612 * 0.02562 * 16 15 13 18 18 N 1.28433 * 109.62105 * 179.81206 * 16 15 13 19 19 C 1.30841 * 110.97530 * 0.47016 * 18 16 15 20 20 C 1.50691 * 126.06591 * 179.73313 * 19 18 16 21 21 C 1.53000 * 117.50063 * 8.59578 * 20 19 18 22 22 C 1.53002 * 117.49958 * 299.97173 * 20 19 18 23 23 C 1.38514 * 126.89734 * 179.97438 * 15 13 12 24 24 Br 1.89101 * 127.33247 * 359.97438 * 23 15 13 25 25 H 1.09000 * 109.47032 * 295.03665 * 1 2 3 26 26 H 1.08999 * 109.47207 * 55.03618 * 1 2 3 27 27 H 1.09002 * 109.47162 * 175.03996 * 1 2 3 28 28 H 0.96996 * 120.00206 * 180.02562 * 7 6 4 29 29 H 0.96997 * 120.00337 * 94.72129 * 12 2 1 30 30 H 1.09002 * 115.54787 * 154.30174 * 20 19 18 31 31 H 1.09001 * 117.49850 * 359.97438 * 21 20 19 32 32 H 1.08998 * 117.50157 * 145.02257 * 21 20 19 33 33 H 1.08998 * 117.49561 * 214.98178 * 22 20 19 34 34 H 1.08995 * 117.49848 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1354 -1.7856 -1.2290 6 6 2.3603 0.0119 -2.3580 7 7 2.7060 -0.6133 -3.4621 8 14 2.3136 1.8789 -2.3175 9 1 3.5993 2.3947 -1.7822 10 1 2.1059 2.3989 -3.6928 11 1 1.1988 2.3274 -1.4451 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0181 2.3572 14 8 1.8582 1.1622 2.4117 15 6 2.6378 -0.7113 3.5578 16 7 2.9961 -2.0268 3.6574 17 1 2.9681 -2.6701 2.9321 18 7 3.3796 -2.2797 4.8568 19 6 3.3001 -1.2121 5.6089 20 6 3.6588 -1.1275 7.0701 21 6 4.3509 -2.3386 7.6989 22 6 2.8916 -2.0293 8.0392 23 6 2.8245 -0.1636 4.8163 24 35 2.5045 1.6225 5.3487 25 1 -0.3633 0.4349 0.9311 26 1 -0.3633 0.5889 -0.8422 27 1 -0.3633 -1.0238 -0.0889 28 1 2.9371 -0.1051 -4.2553 29 1 2.2452 -1.6327 1.1537 30 1 3.9510 -0.1395 7.4260 31 1 4.5463 -3.1966 7.0557 32 1 5.0986 -2.1475 8.4686 33 1 2.6793 -1.6346 9.0328 34 1 2.1271 -2.6833 7.6199 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299693494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:40 Heat of formation + Delta-G solvation = 39.552355 kcal Electronic energy + Delta-G solvation = -19490.636331 eV Core-core repulsion = 16278.283094 eV Total energy + Delta-G solvation = -3212.353237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.83862 -40.52367 -38.05321 -36.86361 -34.52229 -33.56682 -32.76742 -31.26773 -30.42002 -27.36503 -25.49319 -24.65311 -23.17085 -22.17236 -21.73779 -20.82659 -20.26081 -18.76665 -17.48765 -17.09291 -16.89357 -16.54298 -16.15419 -15.63190 -15.27192 -14.85545 -14.75559 -14.55636 -14.27376 -13.35584 -13.12805 -13.02376 -12.84918 -12.66087 -12.45912 -12.43968 -12.30478 -11.89588 -11.85092 -11.39595 -11.28183 -11.23839 -10.87979 -10.77420 -10.29644 -9.97022 -9.81860 -8.41711 -6.48977 -0.12024 0.52249 1.10979 1.29398 1.35210 1.44264 1.68875 2.02452 2.08747 2.25552 2.98468 3.02478 3.31968 3.50102 3.60876 3.99987 4.07135 4.19901 4.42162 4.44674 4.70197 4.78283 4.84251 4.86090 5.04545 5.10934 5.18942 5.28413 5.34593 5.41928 5.57055 5.73545 6.05199 6.53243 6.61591 6.71792 7.07676 7.22342 8.72723 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.021072 B = 0.004048 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.451388 B = 6914.735081 C = 7782.021525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.237 3.763 3 H 0.037 0.963 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.037 3.963 7 N -0.927 5.927 8 Si 0.922 3.078 9 H -0.275 1.275 10 H -0.278 1.278 11 H -0.252 1.252 12 N -0.693 5.693 13 C 0.571 3.429 14 O -0.545 6.545 15 C 0.000 4.000 16 N -0.352 5.352 17 H 0.464 0.536 18 N -0.262 5.262 19 C 0.090 3.910 20 C -0.102 4.102 21 C -0.153 4.153 22 C -0.151 4.151 23 C -0.153 4.153 24 Br 0.014 6.986 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.271 0.729 29 H 0.402 0.598 30 H 0.135 0.865 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.112 -1.665 23.094 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.134 3.866 3 H 0.055 0.945 4 C -0.567 4.567 5 H 0.079 0.921 6 C -0.164 4.164 7 N -0.565 5.565 8 Si 0.747 3.253 9 H -0.200 1.200 10 H -0.204 1.204 11 H -0.176 1.176 12 N -0.342 5.342 13 C 0.355 3.645 14 O -0.421 6.421 15 C -0.133 4.133 16 N -0.070 5.070 17 H 0.313 0.687 18 N -0.095 5.095 19 C -0.070 4.070 20 C -0.122 4.122 21 C -0.190 4.190 22 C -0.189 4.189 23 C -0.245 4.245 24 Br 0.098 6.902 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.237 0.763 30 H 0.153 0.847 31 H 0.112 0.888 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.117 -1.265 23.064 23.125 hybrid contribution 0.014 0.442 -1.409 1.477 sum 1.131 -0.823 21.655 21.700 Atomic orbital electron populations 1.22127 0.96654 1.01518 0.99846 1.18980 0.92207 0.93307 0.82109 0.94526 1.21143 1.44711 0.94915 0.95907 0.92148 1.25571 0.93584 1.02293 0.94983 1.69959 1.46200 1.37819 1.02488 0.86118 0.79870 0.81490 0.77824 1.20021 1.20380 1.17594 1.46315 1.64873 1.14056 1.08983 1.17218 0.78750 0.86467 0.82084 1.90843 1.51356 1.15470 1.84464 1.21536 1.08728 0.86944 0.96105 1.43565 1.45855 1.07784 1.09832 0.68708 1.73075 1.18945 1.26003 0.91455 1.21312 1.01603 0.87287 0.96749 1.20406 1.08553 0.98689 0.84580 1.23059 0.96012 0.97292 1.02665 1.23087 0.95152 1.01059 0.99649 1.22376 1.12586 0.95291 0.94201 1.96631 1.95017 1.08708 1.89808 0.94146 0.93011 0.92227 0.91940 0.76282 0.84744 0.88796 0.86056 0.85869 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.78 9.47 71.98 0.68 -5.10 16 2 C 0.24 10.54 2.22 44.24 0.10 10.64 16 3 H 0.04 1.79 4.73 -2.39 -0.01 1.78 16 4 C -0.53 -27.10 9.05 25.60 0.23 -26.86 16 5 H 0.06 3.26 8.06 -2.91 -0.02 3.24 16 6 C 0.04 2.00 5.47 84.66 0.46 2.46 16 7 N -0.93 -53.50 13.96 21.45 0.30 -53.20 16 8 Si 0.92 43.02 26.99 68.60 1.85 44.88 16 9 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.25 -11.38 6.82 99.48 0.68 -10.70 16 12 N -0.69 -25.55 5.06 -449.70 -2.28 -27.83 16 13 C 0.57 21.11 7.77 86.56 0.67 21.78 16 14 O -0.54 -23.51 15.21 -4.16 -0.06 -23.57 16 15 C 0.00 0.00 7.16 40.77 0.29 0.30 16 16 N -0.35 -8.59 6.85 -47.94 -0.33 -8.92 16 17 H 0.46 8.45 8.22 -220.02 -1.81 6.64 16 18 N -0.26 -6.50 11.73 -47.45 -0.56 -7.06 16 19 C 0.09 2.26 6.75 43.08 0.29 2.55 16 20 C -0.10 -1.92 6.15 -11.54 -0.07 -1.99 16 21 C -0.15 -2.23 10.14 30.60 0.31 -1.91 16 22 C -0.15 -2.20 10.23 30.60 0.31 -1.89 16 23 C -0.15 -4.52 6.73 22.71 0.15 -4.37 16 24 Br 0.01 0.41 32.52 -20.37 -0.66 -0.25 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.40 12.38 7.78 -92.71 -0.72 11.66 16 30 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.09 1.56 7.90 -2.39 -0.02 1.54 16 32 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -64.57 316.48 0.30 -64.27 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -1.40 Total: 16.07 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 3.43 Total: -4.39 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -2.86 Total: -97.01 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.06 Total: -23.57 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.85 Total: 44.88 kcal Atomic # 35 Polarization: 0.41 SS G_CDS: -0.66 Total: -0.25 kcal Total: -64.57 0.30 -64.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299693494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.825 kcal (2) G-P(sol) polarization free energy of solvation -64.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds