Wall clock time and date at job start Tue Mar 31 2020 14:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47399 * 254.75138 * 3 2 1 5 5 C 1.36937 * 119.99812 * 273.26669 * 4 3 2 6 6 H 1.08000 * 119.99578 * 186.69471 * 5 4 3 7 7 C 1.38807 * 119.99960 * 6.68509 * 5 4 3 8 8 N 1.31618 * 120.00374 * 25.19594 * 7 5 4 9 9 Si 1.86808 * 119.99939 * 205.19140 * 7 5 4 10 10 H 1.48497 * 109.46821 * 60.00311 * 9 7 5 11 11 H 1.48502 * 109.47083 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46930 * 300.00327 * 9 7 5 13 13 S 1.65605 * 120.00085 * 93.26022 * 4 3 2 14 14 O 1.42097 * 106.39963 * 156.46291 * 13 4 3 15 15 O 1.42102 * 106.40102 * 23.54503 * 13 4 3 16 16 C 1.76195 * 107.21766 * 270.00449 * 13 4 3 17 17 C 1.38239 * 119.99727 * 269.72101 * 16 13 4 18 18 C 1.38240 * 119.99737 * 179.76251 * 17 16 13 19 19 C 1.38235 * 119.99678 * 0.49585 * 18 17 16 20 20 C 1.50704 * 119.99483 * 179.76122 * 19 18 17 21 21 C 1.53000 * 109.47344 * 270.01931 * 20 19 18 22 22 Cl 1.80298 * 109.47293 * 180.02562 * 21 20 19 23 23 C 1.38228 * 120.00415 * 359.78504 * 19 18 17 24 24 C 1.38236 * 120.00133 * 359.95766 * 23 19 18 25 25 H 4.40642 * 5.51425 * 179.97438 * 4 1 2 26 26 H 1.08999 * 109.47375 * 134.74626 * 3 2 1 27 27 H 1.09001 * 109.47542 * 14.75135 * 3 2 1 28 28 H 0.96994 * 120.00426 * 179.97438 * 8 7 5 29 29 H 1.07995 * 120.00179 * 0.02562 * 17 16 13 30 30 H 1.07996 * 120.00026 * 180.25297 * 18 17 16 31 31 H 1.09000 * 109.47325 * 30.02226 * 20 19 18 32 32 H 1.08999 * 109.47026 * 150.02040 * 20 19 18 33 33 H 1.09000 * 109.47151 * 300.00401 * 21 20 19 34 34 H 1.09007 * 109.46776 * 60.00300 * 21 20 19 35 35 H 1.08002 * 120.00040 * 179.97438 * 23 19 18 36 36 H 1.07997 * 120.00478 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.3641 1.3326 5 6 3.2981 1.6822 1.6657 6 1 3.7587 1.9484 2.6056 7 6 2.8725 2.6762 0.7952 8 7 1.9098 2.4278 -0.0673 9 14 3.6662 4.3665 0.8478 10 1 5.1186 4.2403 0.5657 11 1 3.0370 5.2408 -0.1744 12 1 3.4733 4.9621 2.1945 13 16 3.4876 -0.8190 2.4361 14 8 4.4126 -0.2496 3.3523 15 8 3.7589 -1.9967 1.6887 16 6 2.0148 -1.1374 3.3492 17 6 1.7529 -0.4295 4.5073 18 6 0.5949 -0.6759 5.2211 19 6 -0.2961 -1.6373 4.7821 20 6 -1.5559 -1.9096 5.5632 21 6 -1.2862 -2.9998 6.6022 22 17 -2.7936 -3.3261 7.5361 23 6 -0.0315 -2.3492 3.6272 24 6 1.1239 -2.0991 2.9106 25 1 -1.0501 0.0002 -0.0002 26 1 3.0090 0.7242 -0.7299 27 1 3.0098 -0.9930 -0.2617 28 1 1.6122 3.1224 -0.6753 29 1 2.4509 0.3190 4.8522 30 1 0.3883 -0.1200 6.1236 31 1 -1.8748 -0.9976 6.0679 32 1 -2.3403 -2.2418 4.8832 33 1 -0.9673 -3.9118 6.0975 34 1 -0.5018 -2.6676 7.2822 35 1 -0.7275 -3.1006 3.2846 36 1 1.3305 -2.6550 2.0080 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302304012.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:30 Heat of formation + Delta-G solvation = 5.331367 kcal Electronic energy + Delta-G solvation = -23296.270517 eV Core-core repulsion = 19707.321152 eV Total energy + Delta-G solvation = -3588.949364 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.02222 -36.38602 -36.29296 -35.95202 -34.53371 -33.75176 -32.08700 -31.19072 -30.60349 -29.07102 -26.64992 -24.07804 -23.85777 -22.42631 -21.00971 -18.62438 -18.10411 -17.37683 -16.68501 -16.36166 -15.68941 -15.49146 -14.74655 -14.57615 -14.25721 -14.09579 -14.00718 -13.48745 -13.38478 -13.08390 -13.04611 -12.55369 -12.16100 -11.90863 -11.86507 -11.50336 -11.32683 -11.03145 -10.90732 -10.88041 -10.75019 -10.72779 -10.55440 -10.52588 -10.35897 -9.96240 -9.62488 -9.29247 -8.94326 -8.63466 -8.59009 -8.36102 -6.65548 -4.02495 1.21564 1.66515 1.74097 2.09127 3.05396 3.10657 3.17594 3.67538 3.91867 3.95563 4.12354 4.52905 4.60204 4.63344 4.71677 4.83986 5.02819 5.07762 5.19677 5.26843 5.35535 5.52317 5.68653 5.74381 5.76023 6.00644 6.16767 6.23183 6.38561 6.56029 6.67448 6.72173 6.76592 6.93772 7.09091 7.20877 7.30234 8.09593 8.50499 8.85851 8.92766 10.25890 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.003637 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.585389 B = 7696.205246 C = 7910.175082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.112 4.112 3 C 0.234 3.766 4 N -0.794 5.794 5 C -0.245 4.245 6 H 0.123 0.877 7 C 0.030 3.970 8 N -0.817 5.817 9 Si 0.931 3.069 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.268 1.268 13 S 2.531 3.469 14 O -0.983 6.983 15 O -0.997 6.997 16 C -0.652 4.652 17 C -0.024 4.024 18 C -0.140 4.140 19 C -0.066 4.066 20 C -0.089 4.089 21 C -0.023 4.023 22 Cl -0.193 7.193 23 C -0.139 4.139 24 C -0.024 4.024 25 H 0.195 0.805 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.277 0.723 29 H 0.133 0.867 30 H 0.120 0.880 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.056 -4.484 5.364 9.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.114 4.114 3 C 0.109 3.891 4 N -0.616 5.616 5 C -0.393 4.393 6 H 0.140 0.860 7 C -0.183 4.183 8 N -0.455 5.455 9 Si 0.756 3.244 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.193 1.193 13 S 2.630 3.370 14 O -0.972 6.972 15 O -0.987 6.987 16 C -0.730 4.730 17 C -0.043 4.043 18 C -0.159 4.159 19 C -0.066 4.066 20 C -0.126 4.126 21 C -0.086 4.086 22 Cl -0.167 7.167 23 C -0.158 4.158 24 C -0.043 4.043 25 H 0.212 0.788 26 H 0.134 0.866 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.151 0.849 30 H 0.138 0.862 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.467 -5.142 5.553 9.336 hybrid contribution -1.192 0.962 0.334 1.568 sum -6.659 -4.179 5.887 9.822 Atomic orbital electron populations 1.24172 0.95262 1.07139 1.01840 1.23365 0.94528 0.94787 0.98758 1.18505 0.83935 1.00333 0.86365 1.55387 1.71782 1.17271 1.17139 1.20109 1.31104 0.80459 1.07618 0.85954 1.25605 0.95115 1.00372 0.97240 1.70222 1.21062 1.34800 1.19448 0.85899 0.79871 0.79933 0.78686 1.19105 1.20619 1.19320 1.11506 0.78434 0.74094 0.73006 1.93356 1.62174 1.77595 1.64102 1.93347 1.85781 1.48952 1.70619 1.32519 1.26583 1.04245 1.09668 1.20865 0.95534 0.95777 0.92084 1.21089 0.95134 0.99017 1.00658 1.19710 0.95165 0.96370 0.95383 1.20888 0.95958 0.98949 0.96813 1.24434 0.87126 1.01307 0.95725 1.98714 1.43806 1.96559 1.77607 1.21050 0.98084 1.00790 0.95890 1.20808 0.92012 0.93815 0.97696 0.78785 0.86593 0.90039 0.91185 0.84941 0.86156 0.89758 0.89772 0.88667 0.88648 0.86225 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.34 19.25 29.55 0.57 -4.77 16 2 C -0.11 -2.42 11.25 -37.13 -0.42 -2.83 16 3 C 0.23 5.05 5.45 -6.83 -0.04 5.01 16 4 N -0.79 -18.19 2.88 -62.78 -0.18 -18.37 16 5 C -0.25 -5.76 9.48 -15.06 -0.14 -5.91 16 6 H 0.12 2.84 7.22 -52.49 -0.38 2.47 16 7 C 0.03 0.66 4.92 -17.43 -0.09 0.58 16 8 N -0.82 -18.77 8.96 55.49 0.50 -18.27 16 9 Si 0.93 17.82 29.62 -169.99 -5.04 12.78 16 10 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 11 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 12 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 13 S 2.53 57.36 5.65 -107.50 -0.61 56.75 16 14 O -0.98 -24.15 16.05 -57.17 -0.92 -25.07 16 15 O -1.00 -23.67 15.85 -57.17 -0.91 -24.58 16 16 C -0.65 -13.28 5.97 -39.58 -0.24 -13.51 16 17 C -0.02 -0.44 9.52 -39.58 -0.38 -0.82 16 18 C -0.14 -2.19 9.70 -39.58 -0.38 -2.57 16 19 C -0.07 -0.94 5.13 -104.62 -0.54 -1.47 16 20 C -0.09 -0.95 5.47 -27.88 -0.15 -1.10 16 21 C -0.02 -0.22 6.64 37.16 0.25 0.03 16 22 Cl -0.19 -1.99 29.15 -51.86 -1.51 -3.51 16 23 C -0.14 -2.16 9.70 -39.59 -0.38 -2.54 16 24 C -0.02 -0.45 9.52 -39.58 -0.38 -0.83 16 25 H 0.19 3.27 7.80 -54.09 -0.42 2.84 16 26 H 0.12 2.52 6.41 -51.93 -0.33 2.18 16 27 H 0.08 1.64 6.95 -51.93 -0.36 1.28 16 28 H 0.28 6.06 8.31 -40.82 -0.34 5.73 16 29 H 0.13 2.44 7.61 -52.49 -0.40 2.04 16 30 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 32 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.13 2.34 7.62 -52.49 -0.40 1.94 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -27.98 342.00 -9.78 -37.76 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -3.96 Total: 8.09 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: -2.32 Total: -30.74 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.32 Total: -36.64 kcal Atomic # 8 Polarization: -47.82 SS G_CDS: -1.82 Total: -49.65 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.04 Total: 12.78 kcal Atomic # 16 Polarization: 57.36 SS G_CDS: -0.61 Total: 56.75 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -1.51 Total: -3.51 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.98 -9.78 -37.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302304012.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.091 kcal (2) G-P(sol) polarization free energy of solvation -27.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds