Wall clock time and date at job start Tue Mar 31 2020 14:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47399 * 254.75138 * 3 2 1 5 5 C 1.36937 * 119.99812 * 273.26669 * 4 3 2 6 6 H 1.08000 * 119.99578 * 186.69471 * 5 4 3 7 7 C 1.38807 * 119.99960 * 6.68509 * 5 4 3 8 8 N 1.31618 * 120.00374 * 25.19594 * 7 5 4 9 9 Si 1.86808 * 119.99939 * 205.19140 * 7 5 4 10 10 H 1.48497 * 109.46821 * 60.00311 * 9 7 5 11 11 H 1.48502 * 109.47083 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46930 * 300.00327 * 9 7 5 13 13 S 1.65605 * 120.00085 * 93.26022 * 4 3 2 14 14 O 1.42097 * 106.39963 * 156.46291 * 13 4 3 15 15 O 1.42102 * 106.40102 * 23.54503 * 13 4 3 16 16 C 1.76195 * 107.21766 * 270.00449 * 13 4 3 17 17 C 1.38239 * 119.99727 * 269.72101 * 16 13 4 18 18 C 1.38240 * 119.99737 * 179.76251 * 17 16 13 19 19 C 1.38235 * 119.99678 * 0.49585 * 18 17 16 20 20 C 1.50704 * 119.99483 * 179.76122 * 19 18 17 21 21 C 1.53000 * 109.47344 * 270.01931 * 20 19 18 22 22 Cl 1.80298 * 109.47293 * 180.02562 * 21 20 19 23 23 C 1.38228 * 120.00415 * 359.78504 * 19 18 17 24 24 C 1.38236 * 120.00133 * 359.95766 * 23 19 18 25 25 H 4.40642 * 5.51425 * 179.97438 * 4 1 2 26 26 H 1.08999 * 109.47375 * 134.74626 * 3 2 1 27 27 H 1.09001 * 109.47542 * 14.75135 * 3 2 1 28 28 H 0.96994 * 120.00426 * 179.97438 * 8 7 5 29 29 H 1.07995 * 120.00179 * 0.02562 * 17 16 13 30 30 H 1.07996 * 120.00026 * 180.25297 * 18 17 16 31 31 H 1.09000 * 109.47325 * 30.02226 * 20 19 18 32 32 H 1.08999 * 109.47026 * 150.02040 * 20 19 18 33 33 H 1.09000 * 109.47151 * 300.00401 * 21 20 19 34 34 H 1.09007 * 109.46776 * 60.00300 * 21 20 19 35 35 H 1.08002 * 120.00040 * 179.97438 * 23 19 18 36 36 H 1.07997 * 120.00478 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.3641 1.3326 5 6 3.2981 1.6822 1.6657 6 1 3.7587 1.9484 2.6056 7 6 2.8725 2.6762 0.7952 8 7 1.9098 2.4278 -0.0673 9 14 3.6662 4.3665 0.8478 10 1 5.1186 4.2403 0.5657 11 1 3.0370 5.2408 -0.1744 12 1 3.4733 4.9621 2.1945 13 16 3.4876 -0.8190 2.4361 14 8 4.4126 -0.2496 3.3523 15 8 3.7589 -1.9967 1.6887 16 6 2.0148 -1.1374 3.3492 17 6 1.7529 -0.4295 4.5073 18 6 0.5949 -0.6759 5.2211 19 6 -0.2961 -1.6373 4.7821 20 6 -1.5559 -1.9096 5.5632 21 6 -1.2862 -2.9998 6.6022 22 17 -2.7936 -3.3261 7.5361 23 6 -0.0315 -2.3492 3.6272 24 6 1.1239 -2.0991 2.9106 25 1 -1.0501 0.0002 -0.0002 26 1 3.0090 0.7242 -0.7299 27 1 3.0098 -0.9930 -0.2617 28 1 1.6122 3.1224 -0.6753 29 1 2.4509 0.3190 4.8522 30 1 0.3883 -0.1200 6.1236 31 1 -1.8748 -0.9976 6.0679 32 1 -2.3403 -2.2418 4.8832 33 1 -0.9673 -3.9118 6.0975 34 1 -0.5018 -2.6676 7.2822 35 1 -0.7275 -3.1006 3.2846 36 1 1.3305 -2.6550 2.0080 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302304012.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:28 Heat of formation + Delta-G solvation = -9.310111 kcal Electronic energy + Delta-G solvation = -23296.905419 eV Core-core repulsion = 19707.321152 eV Total energy + Delta-G solvation = -3589.584266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.29946 -38.08192 -37.85369 -37.09631 -36.46038 -34.82356 -33.74888 -32.86193 -31.93644 -30.21099 -28.33160 -25.65623 -25.05307 -23.75853 -22.18789 -20.35184 -19.75379 -18.98199 -18.41261 -18.02753 -16.92969 -16.68159 -16.35720 -16.06122 -15.50650 -15.37524 -15.13919 -15.04179 -14.91056 -14.39650 -14.26257 -14.16358 -13.54780 -13.46388 -13.11537 -12.78943 -12.75210 -12.70102 -12.66240 -12.60565 -12.30546 -12.02358 -12.01782 -11.71019 -11.50888 -11.29889 -11.23259 -10.93213 -10.56311 -10.08863 -9.95743 -9.92908 -8.32025 -5.80369 -0.25070 0.02742 0.40284 1.30716 1.50481 1.55826 1.64400 2.05162 2.35727 2.48817 2.54461 2.83519 2.94701 3.24950 3.64309 3.75839 3.81023 3.91349 3.96526 4.04688 4.06349 4.41026 4.45158 4.48298 4.56211 4.75667 4.80968 4.97177 5.00779 5.07014 5.24882 5.25231 5.34432 5.45149 5.47616 5.54790 5.98612 6.36761 6.80176 7.20164 7.25637 8.59826 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.003637 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.585389 B = 7696.205246 C = 7910.175082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.145 4.145 3 C 0.236 3.764 4 N -0.810 5.810 5 C -0.286 4.286 6 H 0.112 0.888 7 C 0.004 3.996 8 N -0.840 5.840 9 Si 0.985 3.015 10 H -0.268 1.268 11 H -0.276 1.276 12 H -0.267 1.267 13 S 2.561 3.439 14 O -1.008 7.008 15 O -1.013 7.013 16 C -0.679 4.679 17 C -0.044 4.044 18 C -0.138 4.138 19 C -0.047 4.047 20 C -0.084 4.084 21 C -0.020 4.020 22 Cl -0.197 7.197 23 C -0.135 4.135 24 C -0.040 4.040 25 H 0.227 0.773 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.277 0.723 29 H 0.124 0.876 30 H 0.152 0.848 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.154 0.846 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.441 -5.084 6.671 11.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.148 4.148 3 C 0.111 3.889 4 N -0.633 5.633 5 C -0.430 4.430 6 H 0.130 0.870 7 C -0.206 4.206 8 N -0.478 5.478 9 Si 0.808 3.192 10 H -0.193 1.193 11 H -0.201 1.201 12 H -0.192 1.192 13 S 2.662 3.338 14 O -0.998 6.998 15 O -1.003 7.003 16 C -0.762 4.762 17 C -0.064 4.064 18 C -0.157 4.157 19 C -0.048 4.048 20 C -0.121 4.121 21 C -0.082 4.082 22 Cl -0.171 7.171 23 C -0.154 4.154 24 C -0.059 4.059 25 H 0.243 0.757 26 H 0.126 0.874 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.142 0.858 30 H 0.170 0.830 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.172 0.828 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.820 -5.691 6.815 11.831 hybrid contribution -0.570 0.926 0.086 1.091 sum -8.390 -4.766 6.901 11.863 Atomic orbital electron populations 1.24922 0.96089 1.05706 1.00335 1.23526 0.94975 0.96117 1.00134 1.18416 0.84617 1.00203 0.85700 1.54902 1.73623 1.16964 1.17855 1.20061 1.33815 0.81010 1.08138 0.87013 1.26156 0.95113 1.02658 0.96680 1.70293 1.21810 1.35488 1.20165 0.85107 0.78862 0.76664 0.78577 1.19285 1.20059 1.19233 1.09389 0.78207 0.73367 0.72790 1.93325 1.63471 1.78216 1.64783 1.93326 1.86334 1.49337 1.71334 1.31898 1.26021 1.07106 1.11181 1.20979 0.97116 0.95952 0.92330 1.21436 0.93834 0.99238 1.01146 1.20104 0.95666 0.94378 0.94638 1.20917 0.94131 1.00033 0.97013 1.24406 0.86961 1.01288 0.95592 1.98723 1.44154 1.96541 1.77666 1.21420 0.97215 1.01138 0.95615 1.20923 0.93111 0.93672 0.98232 0.75671 0.87394 0.89545 0.91217 0.85788 0.83020 0.88622 0.88429 0.87840 0.87958 0.82829 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.86 19.25 74.32 1.43 -8.42 16 2 C -0.14 -6.31 11.25 31.12 0.35 -5.96 16 3 C 0.24 10.54 5.45 84.57 0.46 11.00 16 4 N -0.81 -38.52 2.88 -352.53 -1.02 -39.54 16 5 C -0.29 -13.98 9.48 84.03 0.80 -13.19 16 6 H 0.11 5.50 7.22 -2.91 -0.02 5.48 16 7 C 0.00 0.18 4.92 84.86 0.42 0.60 16 8 N -0.84 -39.31 8.96 21.65 0.19 -39.11 16 9 Si 0.99 37.19 29.62 68.60 2.03 39.23 16 10 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 11 H -0.28 -10.06 7.11 99.48 0.71 -9.35 16 12 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 13 S 2.56 119.64 5.65 -56.49 -0.32 119.32 16 14 O -1.01 -51.39 16.05 -128.00 -2.05 -53.44 16 15 O -1.01 -49.29 15.85 -128.00 -2.03 -51.32 16 16 C -0.68 -27.67 5.97 22.27 0.13 -27.54 16 17 C -0.04 -1.65 9.52 22.27 0.21 -1.43 16 18 C -0.14 -3.93 9.70 22.27 0.22 -3.72 16 19 C -0.05 -1.17 5.13 -19.87 -0.10 -1.27 16 20 C -0.08 -1.41 5.47 29.85 0.16 -1.25 16 21 C -0.02 -0.30 6.64 71.98 0.48 0.18 16 22 Cl -0.20 -3.42 29.15 -2.72 -0.08 -3.49 16 23 C -0.14 -3.75 9.70 22.27 0.22 -3.53 16 24 C -0.04 -1.44 9.52 22.27 0.21 -1.23 16 25 H 0.23 6.97 7.80 -4.41 -0.03 6.94 16 26 H 0.11 4.92 6.41 -2.39 -0.02 4.90 16 27 H 0.09 3.63 6.95 -2.39 -0.02 3.61 16 28 H 0.28 12.30 8.31 -92.71 -0.77 11.53 16 29 H 0.12 4.68 7.61 -2.91 -0.02 4.66 16 30 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 31 H 0.10 1.48 8.09 -2.39 -0.02 1.46 16 32 H 0.10 1.47 8.09 -2.39 -0.02 1.45 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.12 4.47 7.62 -2.91 -0.02 4.45 16 Total: -1.00 -61.14 342.00 2.81 -58.33 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 1.09 Total: 25.80 kcal Atomic # 6 Polarization: -60.75 SS G_CDS: 4.98 Total: -55.76 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -0.82 Total: -78.65 kcal Atomic # 8 Polarization: -100.68 SS G_CDS: -4.08 Total: -104.76 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.23 kcal Atomic # 16 Polarization: 119.64 SS G_CDS: -0.32 Total: 119.32 kcal Atomic # 17 Polarization: -3.42 SS G_CDS: -0.08 Total: -3.49 kcal Total: -61.14 2.81 -58.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302304012.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.020 kcal (2) G-P(sol) polarization free energy of solvation -61.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds