Wall clock time and date at job start Tue Mar 31 2020 15:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00041 * 2 1 4 4 C 1.52998 * 109.47090 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47240 * 62.67605 * 4 3 2 6 6 C 1.36939 * 120.00057 * 93.43460 * 5 4 3 7 7 H 1.08004 * 119.99984 * 219.66049 * 6 5 4 8 8 C 1.38806 * 120.00076 * 39.65833 * 6 5 4 9 9 N 1.31616 * 120.00509 * 213.15509 * 8 6 5 10 10 Si 1.86805 * 119.99828 * 33.15372 * 8 6 5 11 11 H 1.48501 * 109.47224 * 88.55647 * 10 8 6 12 12 H 1.48499 * 109.46895 * 208.55504 * 10 8 6 13 13 H 1.48497 * 109.47544 * 328.55440 * 10 8 6 14 14 C 1.46503 * 119.99881 * 273.43139 * 5 4 3 15 15 C 1.50700 * 109.47063 * 264.81169 * 14 5 4 16 16 C 1.38239 * 119.99477 * 264.44492 * 15 14 5 17 17 C 1.38298 * 119.98984 * 180.28178 * 16 15 14 18 18 Br 1.89097 * 120.01278 * 179.74594 * 17 16 15 19 19 C 1.38353 * 119.97711 * 359.71825 * 17 16 15 20 20 C 1.38190 * 119.99313 * 0.02562 * 19 17 16 21 21 C 1.38219 * 119.99470 * 84.19440 * 15 14 5 22 22 C 1.50698 * 119.98873 * 0.02562 * 21 15 14 23 23 H 1.09004 * 109.46940 * 299.99961 * 1 2 3 24 24 H 1.08999 * 109.46937 * 59.99978 * 1 2 3 25 25 H 1.09001 * 109.47258 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46808 * 60.00086 * 3 2 1 27 27 H 1.08998 * 109.47191 * 300.00132 * 3 2 1 28 28 H 1.09006 * 109.46808 * 302.67527 * 4 3 2 29 29 H 1.08996 * 109.47112 * 182.67674 * 4 3 2 30 30 H 0.96997 * 120.00900 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.46762 * 144.81146 * 14 5 4 32 32 H 1.09000 * 109.46842 * 24.81606 * 14 5 4 33 33 H 1.08007 * 120.00703 * 0.02562 * 16 15 14 34 34 H 1.08002 * 120.00266 * 179.97438 * 19 17 16 35 35 H 1.07999 * 119.99777 * 179.97438 * 20 19 17 36 36 H 1.09004 * 109.47124 * 263.13022 * 22 21 15 37 37 H 1.09003 * 109.47319 * 143.13371 * 22 21 15 38 38 H 1.09000 * 109.47494 * 23.13006 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9717 0.5143 -1.2280 6 6 4.3261 1.2550 -2.3239 7 1 4.0410 0.9270 -3.3127 8 6 5.0516 2.4275 -2.1640 9 7 4.8614 3.4367 -2.9872 10 14 6.2981 2.5732 -0.7803 11 1 7.6174 2.0775 -1.2482 12 1 6.4203 3.9957 -0.3719 13 1 5.8476 1.7623 0.3793 14 6 4.0289 -0.9486 -1.2830 15 6 5.4287 -1.4088 -0.9667 16 6 6.3166 -1.6757 -1.9920 17 6 7.5993 -2.1036 -1.7018 18 35 8.8123 -2.4757 -3.1039 19 6 7.9950 -2.2588 -0.3851 20 6 7.1083 -1.9867 0.6393 21 6 5.8260 -1.5590 0.3486 22 6 4.8592 -1.2631 1.4660 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8542 0.6027 0.8642 29 1 3.9787 2.1793 0.0473 30 1 5.3681 4.2562 -2.8753 31 1 3.7526 -1.2857 -2.2821 32 1 3.3353 -1.3669 -0.5537 33 1 6.0075 -1.5540 -3.0197 34 1 8.9964 -2.5933 -0.1580 35 1 7.4169 -2.1082 1.6671 36 1 5.0274 -0.2508 1.8335 37 1 5.0129 -1.9744 2.2775 38 1 3.8378 -1.3499 1.0954 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316569577.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:52 Heat of formation + Delta-G solvation = -10.560327 kcal Electronic energy + Delta-G solvation = -20881.792012 eV Core-core repulsion = 17770.806069 eV Total energy + Delta-G solvation = -3110.985942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.62644 -38.87597 -37.15725 -34.51872 -33.66308 -32.65108 -31.34627 -30.36268 -27.95791 -27.10226 -26.90021 -24.64064 -23.39645 -22.57176 -21.05265 -18.75870 -17.60181 -17.12186 -16.97947 -16.66401 -16.51534 -15.97881 -15.79484 -15.51794 -14.80828 -14.52787 -14.29595 -14.10613 -13.99505 -13.56045 -13.43284 -13.40775 -13.07115 -12.77318 -12.52189 -12.29747 -12.12644 -11.99972 -11.73350 -11.62420 -11.49255 -11.37109 -11.22209 -10.60057 -10.39511 -9.74354 -9.35996 -8.68150 -8.26661 -5.50760 0.21951 0.44799 0.69207 1.30594 1.43590 1.48495 2.41970 2.68008 2.98179 3.08868 3.60983 3.89823 4.01371 4.08738 4.32513 4.37959 4.42952 4.47258 4.56754 4.64331 4.67584 4.68989 4.83643 4.85193 4.88816 4.92145 4.99440 5.06078 5.13658 5.24441 5.30683 5.36491 5.45745 5.79862 5.94313 6.03437 6.21793 6.42730 7.03356 7.66527 8.13144 8.93889 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.005229 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.283611 B = 5353.140015 C = 6145.936459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.397 6.397 3 C 0.053 3.947 4 C 0.133 3.867 5 N -0.589 5.589 6 C -0.253 4.253 7 H 0.035 0.965 8 C 0.004 3.996 9 N -0.927 5.927 10 Si 0.899 3.101 11 H -0.307 1.307 12 H -0.301 1.301 13 H -0.230 1.230 14 C 0.186 3.814 15 C -0.095 4.095 16 C -0.090 4.090 17 C -0.110 4.110 18 Br -0.062 7.062 19 C -0.104 4.104 20 C -0.120 4.120 21 C -0.073 4.073 22 C -0.119 4.119 23 H 0.051 0.949 24 H 0.029 0.971 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.024 0.976 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.262 0.738 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.148 0.852 35 H 0.159 0.841 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.491 -12.910 9.976 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.316 6.316 3 C -0.026 4.026 4 C 0.008 3.992 5 N -0.310 5.310 6 C -0.383 4.383 7 H 0.053 0.947 8 C -0.195 4.195 9 N -0.569 5.569 10 Si 0.726 3.274 11 H -0.235 1.235 12 H -0.228 1.228 13 H -0.153 1.153 14 C 0.062 3.938 15 C -0.099 4.099 16 C -0.111 4.111 17 C -0.190 4.190 18 Br 0.023 6.977 19 C -0.124 4.124 20 C -0.138 4.138 21 C -0.074 4.074 22 C -0.175 4.175 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.116 0.884 26 H 0.079 0.921 27 H 0.043 0.957 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.166 0.834 35 H 0.176 0.824 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.041 -13.045 9.396 16.206 hybrid contribution 0.481 1.122 -0.150 1.230 sum 2.522 -11.924 9.247 15.298 Atomic orbital electron populations 1.22840 0.80729 1.03334 0.99921 1.87816 1.20374 1.28051 1.95370 1.23126 0.96059 0.84496 0.98938 1.21641 0.91001 0.96981 0.89541 1.44031 1.74953 1.00696 1.11278 1.18445 1.28798 1.03672 0.87369 0.94711 1.25925 0.99056 0.95920 0.98558 1.70124 1.40817 1.03470 1.42536 0.86518 0.81495 0.76236 0.83138 1.23527 1.22774 1.15328 1.20019 0.90212 0.83576 1.00030 1.20931 0.99359 0.96754 0.92817 1.21013 0.92309 0.97982 0.99804 1.21872 0.94646 1.08846 0.93597 1.96592 1.59346 1.94080 1.47672 1.21251 1.00937 1.00036 0.90194 1.21322 0.92487 0.99873 1.00157 1.20201 0.95843 0.96916 0.94439 1.21083 0.98300 1.02064 0.96012 0.93079 0.95226 0.88362 0.92124 0.95741 0.90029 0.93463 0.92914 0.94321 0.89237 0.86976 0.83419 0.82358 0.91279 0.88892 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.40 -12.78 9.20 -148.98 -1.37 -14.15 16 3 C 0.05 1.84 6.29 71.98 0.45 2.30 16 4 C 0.13 5.25 4.37 86.38 0.38 5.63 16 5 N -0.59 -26.32 1.97 -706.33 -1.39 -27.71 16 6 C -0.25 -13.90 9.75 84.03 0.82 -13.08 16 7 H 0.04 2.16 8.06 -2.91 -0.02 2.14 16 8 C 0.00 0.23 5.01 84.86 0.42 0.66 16 9 N -0.93 -56.81 13.97 21.65 0.30 -56.51 16 10 Si 0.90 44.64 26.52 68.60 1.82 46.46 16 11 H -0.31 -16.16 7.11 99.48 0.71 -15.46 16 12 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 13 H -0.23 -10.17 5.80 99.48 0.58 -9.59 16 14 C 0.19 7.22 5.04 85.63 0.43 7.65 16 15 C -0.09 -3.48 5.43 -19.87 -0.11 -3.59 16 16 C -0.09 -3.43 9.42 22.28 0.21 -3.22 16 17 C -0.11 -3.74 6.22 22.31 0.14 -3.60 16 18 Br -0.06 -1.89 33.70 -20.37 -0.69 -2.58 16 19 C -0.10 -3.00 9.79 22.29 0.22 -2.79 16 20 C -0.12 -3.24 9.73 22.26 0.22 -3.03 16 21 C -0.07 -2.25 5.88 -19.86 -0.12 -2.37 16 22 C -0.12 -2.99 8.18 71.24 0.58 -2.41 16 23 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 2.79 3.92 -2.38 -0.01 2.78 16 29 H 0.05 2.05 4.74 -2.39 -0.01 2.04 16 30 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.04 1.58 7.99 -2.39 -0.02 1.56 16 32 H 0.09 3.10 4.92 -2.39 -0.01 3.08 16 33 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 34 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 35 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.07 1.82 6.80 -2.39 -0.02 1.80 16 37 H 0.09 1.72 8.13 -2.39 -0.02 1.70 16 38 H 0.08 2.05 5.22 -2.39 -0.01 2.04 16 Total: -1.00 -65.16 324.46 4.50 -60.66 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.93 Total: 9.74 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 4.90 Total: -15.91 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -1.09 Total: -84.21 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.37 Total: -14.15 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.82 Total: 46.46 kcal Atomic # 35 Polarization: -1.89 SS G_CDS: -0.69 Total: -2.58 kcal Total: -65.16 4.50 -60.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316569577.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.098 kcal (2) G-P(sol) polarization free energy of solvation -65.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds