Wall clock time and date at job start Tue Mar 31 2020 15:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00070 * 2 1 4 4 C 1.52990 * 109.47191 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47161 * 65.00127 * 4 3 2 6 6 C 1.36938 * 119.99827 * 269.99917 * 5 4 3 7 7 H 1.07993 * 119.99985 * 142.33593 * 6 5 4 8 8 C 1.38809 * 119.99834 * 322.33069 * 6 5 4 9 9 N 1.31619 * 120.00551 * 340.17486 * 8 6 5 10 10 Si 1.86809 * 119.99724 * 160.17368 * 8 6 5 11 11 H 1.48503 * 109.47078 * 60.00226 * 10 8 6 12 12 H 1.48496 * 109.47197 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47000 * 300.00512 * 10 8 6 14 14 C 1.46501 * 120.00156 * 90.00213 * 5 4 3 15 15 C 1.50698 * 109.46667 * 264.58318 * 14 5 4 16 16 C 1.38261 * 120.00209 * 92.54088 * 15 14 5 17 17 C 1.38212 * 120.02330 * 180.25182 * 16 15 14 18 18 C 1.38243 * 120.01167 * 359.49004 * 17 16 15 19 19 C 1.50692 * 120.00718 * 180.25490 * 18 17 16 20 20 C 1.38306 * 119.98746 * 0.53041 * 18 17 16 21 21 Br 1.89094 * 120.01049 * 179.70453 * 20 18 17 22 22 C 1.38198 * 119.99043 * 272.55655 * 15 14 5 23 23 H 1.09009 * 109.47229 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47038 * 299.99688 * 1 2 3 25 25 H 1.08996 * 109.47511 * 59.99971 * 1 2 3 26 26 H 1.09001 * 109.46884 * 59.99865 * 3 2 1 27 27 H 1.09007 * 109.46871 * 300.00383 * 3 2 1 28 28 H 1.08998 * 109.47502 * 304.99609 * 4 3 2 29 29 H 1.09003 * 109.47509 * 184.99900 * 4 3 2 30 30 H 0.96997 * 120.00077 * 179.97438 * 9 8 6 31 31 H 1.08992 * 109.47345 * 144.57890 * 14 5 4 32 32 H 1.09000 * 109.47178 * 24.57853 * 14 5 4 33 33 H 1.08002 * 119.98190 * 359.97170 * 16 15 14 34 34 H 1.08006 * 119.99746 * 179.74006 * 17 16 15 35 35 H 1.08997 * 109.47386 * 270.27283 * 19 18 17 36 36 H 1.09005 * 109.47314 * 30.27224 * 19 18 17 37 37 H 1.08997 * 109.47433 * 150.27305 * 19 18 17 38 38 H 1.08001 * 120.00991 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0967 -0.7970 -1.3369 7 1 3.8200 -1.3085 -2.2469 8 6 4.5752 -1.5195 -0.2526 9 7 5.2669 -0.9132 0.6888 10 14 4.2373 -3.3527 -0.1294 11 1 4.8212 -4.0439 -1.3069 12 1 4.8517 -3.8869 1.1125 13 1 2.7709 -3.5846 -0.0962 14 6 4.2863 1.4006 -2.4148 15 6 3.0776 1.4843 -3.3110 16 6 2.1754 2.5210 -3.1598 17 6 1.0639 2.5953 -3.9780 18 6 0.8594 1.6389 -4.9550 19 6 -0.3494 1.7232 -5.8508 20 6 1.7614 0.6014 -5.1064 21 35 1.4778 -0.7118 -6.4371 22 6 2.8711 0.5246 -4.2836 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8899 26 1 1.6886 1.8463 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8514 0.5683 0.8409 29 1 3.9785 2.1765 0.0889 30 1 5.6009 -1.4181 1.4467 31 1 5.1178 0.9620 -2.9663 32 1 4.5601 2.4011 -2.0798 33 1 2.3368 3.2704 -2.3991 34 1 0.3572 3.4029 -3.8568 35 1 -1.1773 1.1792 -5.3961 36 1 -0.6308 2.7678 -5.9841 37 1 -0.1147 1.2836 -6.8202 38 1 3.5759 -0.2851 -4.4019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316621152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:41 Heat of formation + Delta-G solvation = -14.951634 kcal Electronic energy + Delta-G solvation = -20765.458301 eV Core-core repulsion = 17654.281937 eV Total energy + Delta-G solvation = -3111.176363 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.47724 -38.72699 -37.10789 -34.50260 -33.02367 -32.85802 -30.75875 -30.17560 -28.76321 -27.14354 -26.17527 -24.33052 -23.43175 -22.37427 -21.40508 -18.60909 -17.34892 -17.09167 -16.66547 -16.60327 -16.28797 -15.91122 -15.61354 -15.36028 -14.95349 -14.69506 -14.32707 -14.05015 -13.49644 -13.36867 -13.13109 -13.03816 -12.79556 -12.71319 -12.60410 -12.35517 -12.13977 -11.97531 -11.93969 -11.78372 -11.63573 -11.47233 -11.02861 -10.45143 -10.29855 -9.64397 -9.35540 -8.47664 -7.72985 -5.34388 0.25824 0.45930 0.71823 1.44499 1.48343 1.55237 2.54216 2.76284 3.23637 3.38236 3.84946 3.89429 3.94067 4.15712 4.33653 4.42639 4.44523 4.53419 4.61948 4.65245 4.75696 4.78218 4.80494 4.80772 4.86472 4.94002 4.98395 5.05965 5.14059 5.27972 5.39534 5.52107 5.73919 5.78101 5.85791 6.02991 6.49887 6.70116 7.26699 7.93894 8.43165 9.22413 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.013747 B = 0.005348 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.368839 B = 5234.765786 C = 6028.116751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.397 6.397 3 C 0.050 3.950 4 C 0.139 3.861 5 N -0.579 5.579 6 C -0.232 4.232 7 H 0.041 0.959 8 C -0.024 4.024 9 N -0.918 5.918 10 Si 0.940 3.060 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.289 1.289 14 C 0.177 3.823 15 C -0.088 4.088 16 C -0.098 4.098 17 C -0.115 4.115 18 C -0.076 4.076 19 C -0.117 4.117 20 C -0.104 4.104 21 Br -0.058 7.058 22 C -0.089 4.089 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.248 0.752 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.137 0.863 34 H 0.157 0.843 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.853 8.581 -11.660 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.315 6.315 3 C -0.028 4.028 4 C 0.013 3.987 5 N -0.299 5.299 6 C -0.362 4.362 7 H 0.059 0.941 8 C -0.221 4.221 9 N -0.564 5.564 10 Si 0.770 3.230 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.215 1.215 14 C 0.052 3.948 15 C -0.092 4.092 16 C -0.116 4.116 17 C -0.134 4.134 18 C -0.078 4.078 19 C -0.173 4.173 20 C -0.183 4.183 21 Br 0.028 6.972 22 C -0.109 4.109 23 H 0.094 0.906 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.155 0.845 34 H 0.175 0.825 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.721 7.843 -12.007 18.522 hybrid contribution -0.008 -0.928 0.691 1.157 sum -11.729 6.915 -11.316 17.704 Atomic orbital electron populations 1.22749 0.81959 1.02195 0.99834 1.88144 1.19235 1.29014 1.95156 1.23363 0.96889 0.83959 0.98621 1.21042 0.89653 0.96480 0.91532 1.43712 1.75929 1.02161 1.08052 1.18801 1.34591 0.83258 0.99575 0.94123 1.25488 0.97250 1.00202 0.99115 1.70025 1.37106 1.36262 1.12983 0.85772 0.77563 0.82958 0.76687 1.20525 1.21873 1.21539 1.19949 0.91742 0.95221 0.87919 1.20913 0.99465 0.94049 0.94753 1.21295 0.93876 0.97680 0.98784 1.21264 0.97989 0.99282 0.94842 1.20035 0.96460 0.93385 0.97929 1.20962 0.93967 1.04224 0.98152 1.21808 0.99826 0.97368 0.99327 1.96564 1.96705 1.53033 1.50914 1.20940 0.96528 0.98481 0.94998 0.90581 0.93341 0.94323 0.93928 0.93357 0.91424 0.92450 0.94278 0.94082 0.91369 0.84492 0.82536 0.90367 0.89037 0.90976 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 11.01 113.37 1.25 2.21 16 2 O -0.40 -17.54 10.18 -148.98 -1.52 -19.06 16 3 C 0.05 1.95 6.28 71.98 0.45 2.40 16 4 C 0.14 6.28 5.76 86.38 0.50 6.78 16 5 N -0.58 -27.73 2.40 -706.37 -1.70 -29.43 16 6 C -0.23 -12.72 8.96 84.03 0.75 -11.96 16 7 H 0.04 2.32 7.89 -2.91 -0.02 2.30 16 8 C -0.02 -1.36 5.00 84.86 0.42 -0.93 16 9 N -0.92 -53.83 11.38 21.65 0.25 -53.58 16 10 Si 0.94 47.03 29.60 68.60 2.03 49.06 16 11 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 12 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 13 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 14 C 0.18 7.08 5.85 85.63 0.50 7.58 16 15 C -0.09 -3.11 5.37 -19.87 -0.11 -3.22 16 16 C -0.10 -2.79 7.83 22.27 0.17 -2.62 16 17 C -0.12 -2.81 9.70 22.26 0.22 -2.60 16 18 C -0.08 -1.99 5.88 -19.85 -0.12 -2.10 16 19 C -0.12 -2.24 9.55 71.23 0.68 -1.56 16 20 C -0.10 -3.26 6.22 22.31 0.14 -3.13 16 21 Br -0.06 -1.61 31.79 -20.37 -0.65 -2.26 16 22 C -0.09 -3.23 9.45 22.29 0.21 -3.01 16 23 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 24 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.05 1.71 5.73 -2.38 -0.01 1.70 16 28 H 0.07 3.65 5.46 -2.39 -0.01 3.64 16 29 H 0.06 2.31 7.86 -2.39 -0.02 2.29 16 30 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 31 H 0.04 1.73 8.04 -2.39 -0.02 1.71 16 32 H 0.07 2.40 7.76 -2.39 -0.02 2.38 16 33 H 0.14 3.39 7.78 -2.91 -0.02 3.37 16 34 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.31 8.09 -2.38 -0.02 1.29 16 37 H 0.07 1.40 6.65 -2.39 -0.02 1.39 16 38 H 0.11 4.25 8.05 -2.91 -0.02 4.23 16 Total: -1.00 -64.40 333.89 4.53 -59.87 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 1.04 Total: 7.55 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 5.07 Total: -12.16 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -1.45 Total: -83.01 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -1.52 Total: -19.06 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Atomic # 35 Polarization: -1.61 SS G_CDS: -0.65 Total: -2.26 kcal Total: -64.40 4.53 -59.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316621152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.920 kcal (2) G-P(sol) polarization free energy of solvation -64.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds