Wall clock time and date at job start Tue Mar 31 2020 15:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 119.99845 * 2 1 4 4 H 1.48495 * 109.47102 * 270.00007 * 3 2 1 5 5 H 1.48499 * 109.47073 * 30.00158 * 3 2 1 6 6 H 1.48501 * 109.46955 * 150.00205 * 3 2 1 7 7 C 1.37877 * 120.00569 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00612 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99310 * 359.97438 * 7 2 1 10 10 C 1.53036 * 109.45112 * 300.06143 * 9 7 2 11 11 C 1.53191 * 109.31395 * 178.62367 * 10 9 7 12 12 N 1.46925 * 108.77673 * 54.63423 * 11 10 9 13 13 C 1.34780 * 120.63416 * 126.36852 * 12 11 10 14 14 O 1.21574 * 119.99380 * 354.98884 * 13 12 11 15 15 C 1.47704 * 120.00463 * 174.98862 * 13 12 11 16 16 C 1.39672 * 120.13988 * 312.11597 * 15 13 12 17 17 C 1.37837 * 119.87568 * 179.69888 * 16 15 13 18 18 C 1.38574 * 120.17099 * 0.59481 * 17 16 15 19 19 Cl 1.73592 * 119.85678 * 179.69931 * 18 17 16 20 20 C 1.38426 * 120.28549 * 359.67738 * 18 17 16 21 21 C 1.38085 * 120.11977 * 0.02562 * 20 18 17 22 22 Cl 1.73595 * 120.08536 * 180.02562 * 21 20 18 23 23 C 1.46924 * 118.73986 * 306.39309 * 12 11 10 24 24 C 1.53042 * 109.45792 * 180.02562 * 9 7 2 25 25 H 0.97005 * 120.00368 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46129 * 60.02916 * 9 7 2 27 27 H 1.08997 * 109.49749 * 58.67326 * 10 9 7 28 28 H 1.08998 * 109.50002 * 298.57464 * 10 9 7 29 29 H 1.08998 * 109.58758 * 294.84889 * 11 10 9 30 30 H 1.08998 * 109.59183 * 174.42098 * 11 10 9 31 31 H 1.08001 * 120.05718 * 359.97438 * 16 15 13 32 32 H 1.08002 * 119.91103 * 180.29852 * 17 16 15 33 33 H 1.08001 * 119.93916 * 180.02562 * 20 18 17 34 34 H 1.08999 * 109.58782 * 173.39170 * 23 12 11 35 35 H 1.08997 * 109.58750 * 293.67882 * 23 12 11 36 36 H 1.08999 * 109.49754 * 61.41861 * 24 9 7 37 37 H 1.08996 * 109.52339 * 301.34355 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 0.3707 -2.5793 1.2487 11 6 -0.4196 -3.8914 1.2283 12 7 0.5229 -5.0089 1.0815 13 6 0.5132 -6.0349 1.9556 14 8 -0.2169 -5.9987 2.9270 15 6 1.3894 -7.2030 1.7332 16 6 1.4404 -7.8124 0.4775 17 6 2.2647 -8.8984 0.2744 18 6 3.0329 -9.3941 1.3157 19 17 4.0622 -10.7669 1.0529 20 6 2.9834 -8.7989 2.5645 21 6 2.1664 -7.7066 2.7797 22 17 2.1055 -6.9606 4.3459 23 6 1.4767 -4.9866 -0.0358 24 6 2.2458 -3.6621 -0.0005 25 1 -0.4851 0.8401 0.0004 26 1 0.6245 -2.5567 -0.8906 27 1 -0.3218 -1.7377 1.2604 28 1 0.9986 -2.5467 2.1390 29 1 -1.1142 -3.8866 0.3883 30 1 -0.9723 -3.9998 2.1615 31 1 0.8385 -7.4307 -0.3339 32 1 2.3082 -9.3671 -0.6977 33 1 3.5848 -9.1896 3.3720 34 1 2.1753 -5.8174 0.0634 35 1 0.9370 -5.0736 -0.9787 36 1 2.8558 -3.6191 0.9017 37 1 2.8886 -3.5916 -0.8779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334262989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:54 Heat of formation + Delta-G solvation = -26.032983 kcal Electronic energy + Delta-G solvation = -23130.758464 eV Core-core repulsion = 19538.405333 eV Total energy + Delta-G solvation = -3592.353131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51099 -38.79371 -37.08157 -36.71841 -36.45214 -33.65950 -31.85373 -31.17847 -30.97508 -29.87441 -26.38387 -24.28188 -23.34585 -22.76499 -22.12735 -20.26091 -18.84435 -17.52886 -17.13731 -16.38452 -16.30703 -15.62362 -15.02878 -14.62407 -14.57416 -14.27825 -13.99850 -13.77275 -13.27236 -12.85758 -12.79540 -12.60900 -12.52666 -12.31424 -12.07429 -11.89191 -11.34210 -11.25035 -11.18805 -11.04767 -10.96196 -10.67041 -10.46769 -10.12338 -9.69715 -9.62105 -9.41275 -9.11894 -9.00968 -8.92411 -8.40267 -8.08601 -6.04769 -4.11375 0.40392 0.73043 1.52450 2.03982 2.68336 3.11305 3.27100 3.34672 3.37524 3.41831 4.32144 4.39049 4.44260 4.57732 4.80669 4.91422 5.24950 5.25862 5.36043 5.48513 5.65676 5.68805 5.75324 5.85732 5.99164 6.10466 6.19998 6.35230 6.39651 6.56704 6.75713 6.90984 7.14625 7.28498 7.66180 7.75726 7.89167 8.02571 8.35635 8.39013 8.91828 9.54022 11.00691 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.018658 B = 0.003220 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.373528 B = 8694.796144 C = 9149.548113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.110 3.890 12 N -0.589 5.589 13 C 0.550 3.450 14 O -0.528 6.528 15 C -0.105 4.105 16 C -0.064 4.064 17 C -0.112 4.112 18 C -0.011 4.011 19 Cl -0.057 7.057 20 C -0.110 4.110 21 C 0.015 3.985 22 Cl -0.031 7.031 23 C 0.099 3.901 24 C -0.124 4.124 25 H 0.261 0.739 26 H 0.028 0.972 27 H 0.105 0.895 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.733 -19.442 0.616 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.011 4.011 12 N -0.321 5.321 13 C 0.336 3.664 14 O -0.406 6.406 15 C -0.109 4.109 16 C -0.083 4.083 17 C -0.131 4.131 18 C -0.038 4.038 19 Cl -0.028 7.028 20 C -0.129 4.129 21 C -0.013 4.013 22 Cl -0.002 7.002 23 C -0.023 4.023 24 C -0.162 4.162 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.123 0.877 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.167 0.833 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.263 -19.312 1.249 19.817 hybrid contribution 0.678 0.879 0.035 1.111 sum 4.942 -18.434 1.283 19.128 Atomic orbital electron populations 1.69831 1.05858 1.26536 1.50676 1.24956 0.94860 0.99079 0.95023 0.86620 0.79920 0.83556 0.78065 1.20716 1.21235 1.19975 1.21175 0.92899 0.90548 1.50575 0.92711 1.18637 0.92558 0.91618 0.94103 1.22021 1.00081 0.94675 0.99387 1.21959 0.91282 0.86289 1.01598 1.48176 1.35723 1.20700 1.27524 1.17994 0.82879 0.82389 0.83105 1.90798 1.41781 1.79805 1.28176 1.20087 0.98909 0.98398 0.93514 1.21337 0.97186 0.94216 0.95550 1.21084 0.96203 0.96765 0.99047 1.20910 0.96223 0.91968 0.94715 1.98392 1.66122 1.41663 1.96629 1.20849 0.99936 0.95212 0.96929 1.20771 0.97460 0.94899 0.88160 1.98432 1.97277 1.80955 1.23503 1.22085 0.91510 1.00070 0.88642 1.22015 0.98983 0.94062 1.01143 0.92920 0.95418 0.87710 0.94218 0.91954 0.90356 0.83285 0.83630 0.83368 0.90993 0.91521 0.92802 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.36 11.31 55.43 0.63 -23.74 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.51 -13.44 8.56 -34.44 -0.29 -13.74 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.14 2.07 -91.73 -0.19 0.95 16 10 C -0.12 -2.78 5.15 -26.61 -0.14 -2.91 16 11 C 0.11 2.10 6.44 -3.71 -0.02 2.08 16 12 N -0.59 -10.15 2.97 -173.93 -0.52 -10.67 16 13 C 0.55 9.43 6.78 -12.39 -0.08 9.34 16 14 O -0.53 -10.58 15.18 5.30 0.08 -10.50 16 15 C -0.10 -1.44 4.86 -104.94 -0.51 -1.96 16 16 C -0.06 -0.67 7.51 -39.19 -0.29 -0.97 16 17 C -0.11 -0.99 9.81 -39.60 -0.39 -1.38 16 18 C -0.01 -0.10 6.33 -39.39 -0.25 -0.35 16 19 Cl -0.06 -0.48 28.95 -51.86 -1.50 -1.98 16 20 C -0.11 -1.15 9.60 -39.57 -0.38 -1.53 16 21 C 0.02 0.20 6.34 -39.08 -0.25 -0.05 16 22 Cl -0.03 -0.45 27.11 -51.86 -1.41 -1.85 16 23 C 0.10 1.52 5.22 -3.71 -0.02 1.50 16 24 C -0.12 -2.33 5.30 -26.61 -0.14 -2.47 16 25 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.10 2.64 6.03 -51.93 -0.31 2.33 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.54 6.99 -51.93 -0.36 1.18 16 31 H 0.15 1.34 7.26 -52.49 -0.38 0.96 16 32 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.07 0.93 5.07 -51.93 -0.26 0.67 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 332.00 15.07 5.00 5.00 Total: -1.00 -28.88 332.00 -10.03 -38.92 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -4.24 Total: -0.96 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -3.05 Total: -9.93 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.11 Total: -34.41 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -2.91 Total: -3.83 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.88 -10.03 -38.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334262989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.885 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds