Wall clock time and date at job start Tue Mar 31 2020 15:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 119.99845 * 2 1 4 4 H 1.48495 * 109.47102 * 270.00007 * 3 2 1 5 5 H 1.48499 * 109.47073 * 30.00158 * 3 2 1 6 6 H 1.48501 * 109.46955 * 150.00205 * 3 2 1 7 7 C 1.37877 * 120.00569 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00612 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99310 * 359.97438 * 7 2 1 10 10 C 1.53036 * 109.45112 * 300.06143 * 9 7 2 11 11 C 1.53191 * 109.31395 * 178.62367 * 10 9 7 12 12 N 1.46925 * 108.77673 * 54.63423 * 11 10 9 13 13 C 1.34780 * 120.63416 * 126.36852 * 12 11 10 14 14 O 1.21574 * 119.99380 * 354.98884 * 13 12 11 15 15 C 1.47704 * 120.00463 * 174.98862 * 13 12 11 16 16 C 1.39672 * 120.13988 * 312.11597 * 15 13 12 17 17 C 1.37837 * 119.87568 * 179.69888 * 16 15 13 18 18 C 1.38574 * 120.17099 * 0.59481 * 17 16 15 19 19 Cl 1.73592 * 119.85678 * 179.69931 * 18 17 16 20 20 C 1.38426 * 120.28549 * 359.67738 * 18 17 16 21 21 C 1.38085 * 120.11977 * 0.02562 * 20 18 17 22 22 Cl 1.73595 * 120.08536 * 180.02562 * 21 20 18 23 23 C 1.46924 * 118.73986 * 306.39309 * 12 11 10 24 24 C 1.53042 * 109.45792 * 180.02562 * 9 7 2 25 25 H 0.97005 * 120.00368 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46129 * 60.02916 * 9 7 2 27 27 H 1.08997 * 109.49749 * 58.67326 * 10 9 7 28 28 H 1.08998 * 109.50002 * 298.57464 * 10 9 7 29 29 H 1.08998 * 109.58758 * 294.84889 * 11 10 9 30 30 H 1.08998 * 109.59183 * 174.42098 * 11 10 9 31 31 H 1.08001 * 120.05718 * 359.97438 * 16 15 13 32 32 H 1.08002 * 119.91103 * 180.29852 * 17 16 15 33 33 H 1.08001 * 119.93916 * 180.02562 * 20 18 17 34 34 H 1.08999 * 109.58782 * 173.39170 * 23 12 11 35 35 H 1.08997 * 109.58750 * 293.67882 * 23 12 11 36 36 H 1.08999 * 109.49754 * 61.41861 * 24 9 7 37 37 H 1.08996 * 109.52339 * 301.34355 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 0.3707 -2.5793 1.2487 11 6 -0.4196 -3.8914 1.2283 12 7 0.5229 -5.0089 1.0815 13 6 0.5132 -6.0349 1.9556 14 8 -0.2169 -5.9987 2.9270 15 6 1.3894 -7.2030 1.7332 16 6 1.4404 -7.8124 0.4775 17 6 2.2647 -8.8984 0.2744 18 6 3.0329 -9.3941 1.3157 19 17 4.0622 -10.7669 1.0529 20 6 2.9834 -8.7989 2.5645 21 6 2.1664 -7.7066 2.7797 22 17 2.1055 -6.9606 4.3459 23 6 1.4767 -4.9866 -0.0358 24 6 2.2458 -3.6621 -0.0005 25 1 -0.4851 0.8401 0.0004 26 1 0.6245 -2.5567 -0.8906 27 1 -0.3218 -1.7377 1.2604 28 1 0.9986 -2.5467 2.1390 29 1 -1.1142 -3.8866 0.3883 30 1 -0.9723 -3.9998 2.1615 31 1 0.8385 -7.4307 -0.3339 32 1 2.3082 -9.3671 -0.6977 33 1 3.5848 -9.1896 3.3720 34 1 2.1753 -5.8174 0.0634 35 1 0.9370 -5.0736 -0.9787 36 1 2.8558 -3.6191 0.9017 37 1 2.8886 -3.5916 -0.8779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334262989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:53 Heat of formation + Delta-G solvation = -40.445346 kcal Electronic energy + Delta-G solvation = -23131.383431 eV Core-core repulsion = 19538.405333 eV Total energy + Delta-G solvation = -3592.978098 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.66637 -39.88308 -38.39840 -37.76831 -37.34874 -35.40170 -33.23804 -32.50798 -32.01143 -31.25794 -28.10470 -25.62487 -24.41218 -24.06804 -23.52822 -21.68092 -20.26404 -18.72073 -18.44675 -17.96441 -17.37524 -16.90510 -16.51718 -15.94751 -15.85327 -15.20167 -15.05760 -14.92818 -14.84239 -14.54475 -14.31279 -13.91313 -13.54301 -13.41874 -13.36843 -13.06725 -12.91431 -12.80983 -12.47594 -12.20012 -12.15527 -12.09704 -12.00187 -11.91995 -11.43646 -11.15911 -10.89998 -10.79583 -10.40229 -10.08955 -9.88582 -9.56583 -8.07502 -6.20725 -0.49332 -0.07384 0.71047 1.15486 1.40870 1.43329 1.51728 1.51974 1.94241 2.35238 2.44167 3.19510 3.30771 3.53629 3.85925 3.96971 4.04974 4.08043 4.30039 4.32124 4.48851 4.54147 4.59159 4.68158 4.73209 4.87787 4.90916 4.95920 4.98578 5.16618 5.23367 5.34137 5.45106 5.52151 5.66914 5.99205 6.11362 6.39402 6.41789 6.90419 7.04297 7.47393 8.95811 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.018658 B = 0.003220 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.373528 B = 8694.796144 C = 9149.548113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.047 3.953 10 C -0.112 4.112 11 C 0.122 3.878 12 N -0.593 5.593 13 C 0.550 3.450 14 O -0.565 6.565 15 C -0.128 4.128 16 C -0.058 4.058 17 C -0.096 4.096 18 C -0.007 4.007 19 Cl -0.041 7.041 20 C -0.107 4.107 21 C 0.000 4.000 22 Cl -0.056 7.056 23 C 0.106 3.894 24 C -0.118 4.118 25 H 0.260 0.740 26 H 0.010 0.990 27 H 0.074 0.926 28 H 0.017 0.983 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.169 0.831 32 H 0.181 0.819 33 H 0.163 0.837 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.039 0.961 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.153 -21.712 -1.125 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.774 3.226 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.069 0.931 9 C 0.028 3.972 10 C -0.151 4.151 11 C 0.000 4.000 12 N -0.324 5.324 13 C 0.339 3.661 14 O -0.445 6.445 15 C -0.132 4.132 16 C -0.077 4.077 17 C -0.114 4.114 18 C -0.034 4.034 19 Cl -0.012 7.012 20 C -0.126 4.126 21 C -0.028 4.028 22 Cl -0.027 7.027 23 C -0.016 4.016 24 C -0.156 4.156 25 H 0.069 0.931 26 H 0.028 0.972 27 H 0.092 0.908 28 H 0.036 0.964 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.187 0.813 32 H 0.198 0.802 33 H 0.180 0.820 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.708 -21.600 -0.510 22.347 hybrid contribution 0.293 1.499 0.553 1.624 sum 6.001 -20.101 0.043 20.978 Atomic orbital electron populations 1.69958 1.06945 1.27048 1.51402 1.25666 0.95637 1.02101 0.94991 0.85719 0.78703 0.79972 0.78233 1.19926 1.21302 1.19730 1.21585 0.93020 0.92247 1.50224 0.93108 1.18604 0.93063 0.92388 0.93123 1.21775 0.99319 0.95666 0.98331 1.21612 0.91304 0.85539 1.01585 1.48176 1.35722 1.20159 1.28351 1.18505 0.82602 0.82990 0.82040 1.90771 1.43386 1.80750 1.29619 1.19900 0.99837 0.98081 0.95384 1.21549 0.97314 0.94296 0.94499 1.21436 0.94333 0.95499 1.00162 1.21061 0.95979 0.91986 0.94416 1.98410 1.65587 1.40717 1.96492 1.20982 0.99316 0.94259 0.98028 1.20890 0.98806 0.95974 0.87103 1.98420 1.97454 1.81561 1.25236 1.22184 0.91589 0.98908 0.88888 1.21882 0.98251 0.94370 1.01068 0.93063 0.97176 0.90788 0.96438 0.90945 0.91316 0.81335 0.80217 0.81951 0.87825 0.89142 0.94238 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.24 11.31 21.45 0.24 -51.00 16 2 C 0.01 0.80 5.30 84.66 0.45 1.25 16 3 Si 0.95 42.93 29.54 68.60 2.03 44.96 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.53 -28.28 8.56 25.60 0.22 -28.06 16 8 H 0.05 2.67 7.74 -2.91 -0.02 2.64 16 9 C 0.05 2.18 2.07 -11.51 -0.02 2.16 16 10 C -0.11 -5.25 5.15 30.67 0.16 -5.09 16 11 C 0.12 4.75 6.44 86.36 0.56 5.31 16 12 N -0.59 -19.96 2.97 -822.47 -2.44 -22.40 16 13 C 0.55 18.56 6.78 86.74 0.59 19.15 16 14 O -0.57 -23.05 15.18 -3.95 -0.06 -23.11 16 15 C -0.13 -3.29 4.86 -20.07 -0.10 -3.38 16 16 C -0.06 -1.00 7.51 22.52 0.17 -0.83 16 17 C -0.10 -1.25 9.81 22.25 0.22 -1.03 16 18 C -0.01 -0.11 6.33 22.39 0.14 0.03 16 19 Cl -0.04 -0.54 28.95 -2.72 -0.08 -0.62 16 20 C -0.11 -1.98 9.60 22.28 0.21 -1.76 16 21 C 0.00 0.01 6.34 22.59 0.14 0.15 16 22 Cl -0.06 -1.62 27.11 -2.72 -0.07 -1.70 16 23 C 0.11 2.97 5.22 86.36 0.45 3.42 16 24 C -0.12 -4.30 5.30 30.67 0.16 -4.14 16 25 H 0.26 14.00 8.31 -92.70 -0.77 13.23 16 26 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.07 3.92 6.03 -2.39 -0.01 3.90 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.07 2.80 6.99 -2.39 -0.02 2.79 16 31 H 0.17 2.25 7.26 -2.91 -0.02 2.23 16 32 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.10 2.30 5.07 -2.39 -0.01 2.29 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -64.87 332.00 4.06 -60.81 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.10 Total: 5.89 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 3.35 Total: -12.83 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -2.20 Total: -73.40 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.06 Total: -23.11 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.15 Total: -2.32 kcal Total: -64.87 4.06 -60.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334262989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.367 kcal (2) G-P(sol) polarization free energy of solvation -64.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds