Wall clock time and date at job start Tue Mar 31 2020 15:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48501 * 109.46907 * 269.99417 * 3 2 1 5 5 H 1.48505 * 109.46802 * 29.99268 * 3 2 1 6 6 H 1.48491 * 109.47280 * 149.99339 * 3 2 1 7 7 C 1.37878 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00150 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.53074 * 109.43808 * 59.79114 * 9 7 2 11 11 C 1.53196 * 109.29161 * 181.23863 * 10 9 7 12 12 N 1.46933 * 108.89363 * 305.58018 * 11 10 9 13 13 C 1.34779 * 120.62858 * 233.52102 * 12 11 10 14 14 O 1.21553 * 119.99872 * 174.39343 * 13 12 11 15 15 C 1.47846 * 120.00259 * 354.38280 * 13 12 11 16 16 C 1.39567 * 120.13145 * 324.41868 * 15 13 12 17 17 C 1.38096 * 119.86123 * 179.74374 * 16 15 13 18 18 Cl 1.73591 * 119.93240 * 180.27517 * 17 16 15 19 19 C 1.38447 * 120.13104 * 0.53158 * 17 16 15 20 20 C 1.38444 * 120.27036 * 359.73765 * 19 17 16 21 21 Cl 1.73605 * 119.93394 * 179.97438 * 20 19 17 22 22 C 1.38087 * 120.13395 * 359.97438 * 20 19 17 23 23 C 1.46927 * 118.73778 * 53.53600 * 12 11 10 24 24 C 1.53038 * 109.46005 * 179.97438 * 9 7 2 25 25 H 0.96997 * 120.00104 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.45743 * 299.97486 * 9 7 2 27 27 H 1.09001 * 109.39249 * 61.36890 * 10 9 7 28 28 H 1.08993 * 109.62737 * 301.25023 * 10 9 7 29 29 H 1.09000 * 109.58585 * 185.72778 * 11 10 9 30 30 H 1.08994 * 109.58857 * 65.43523 * 11 10 9 31 31 H 1.07990 * 120.06951 * 359.97438 * 16 15 13 32 32 H 1.08000 * 119.86457 * 179.76833 * 19 17 16 33 33 H 1.08005 * 120.07105 * 180.02562 * 22 20 19 34 34 H 1.09003 * 109.58069 * 66.18043 * 23 12 11 35 35 H 1.09003 * 109.58429 * 186.46575 * 23 12 11 36 36 H 1.08996 * 109.49929 * 58.67902 * 24 9 7 37 37 H 1.08993 * 109.52324 * 298.59340 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 0.3679 -2.5775 -1.2472 11 6 -0.4196 -3.8914 -1.2282 12 7 0.5230 -5.0090 -1.0815 13 6 0.5125 -6.0353 -1.9552 14 8 1.3617 -6.9021 -1.8846 15 6 -0.5318 -6.1068 -2.9992 16 6 -1.8290 -5.6718 -2.7236 17 6 -2.7988 -5.7362 -3.7046 18 17 -4.4111 -5.1891 -3.3659 19 6 -2.4892 -6.2412 -4.9559 20 6 -1.2056 -6.6794 -5.2335 21 17 -0.8270 -7.3116 -6.8054 22 6 -0.2257 -6.6145 -4.2627 23 6 1.4768 -4.9866 0.0358 24 6 2.2459 -3.6622 0.0005 25 1 -0.4850 0.8400 -0.0004 26 1 0.6245 -2.5567 0.8906 27 1 0.9956 -2.5425 -2.1377 28 1 -0.3264 -1.7374 -1.2576 29 1 -0.9722 -3.9997 -2.1615 30 1 -1.1157 -3.8881 -0.3896 31 1 -2.0729 -5.2823 -1.7464 32 1 -3.2519 -6.2931 -5.7187 33 1 0.7754 -6.9562 -4.4805 34 1 0.9368 -5.0711 0.9789 35 1 2.1738 -5.8190 -0.0621 36 1 2.8882 -3.5915 0.8782 37 1 2.8562 -3.6194 -0.9014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334814633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:57 Heat of formation + Delta-G solvation = -23.567924 kcal Electronic energy + Delta-G solvation = -23053.085302 eV Core-core repulsion = 19460.839064 eV Total energy + Delta-G solvation = -3592.246238 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.60528 -38.83074 -37.05532 -36.92988 -36.43075 -33.71393 -32.15901 -31.06779 -30.75299 -29.96356 -26.51333 -24.45704 -23.33413 -22.63870 -22.19303 -20.32320 -18.95453 -17.49474 -16.94331 -16.36114 -16.23574 -15.63188 -15.18827 -14.88806 -14.59375 -14.57488 -14.01332 -13.66482 -13.18211 -12.88333 -12.84849 -12.60690 -12.45507 -12.37485 -12.09155 -11.71442 -11.45732 -11.38721 -11.22121 -11.14364 -10.96904 -10.69925 -10.46194 -10.18965 -9.86496 -9.63973 -9.27582 -9.23112 -9.11303 -8.85662 -8.43739 -8.14907 -6.08085 -4.14139 0.46480 0.67956 1.51126 1.95887 2.64056 3.14356 3.25575 3.33002 3.36107 3.43507 4.29602 4.37334 4.59308 4.63865 4.76667 5.00401 5.05093 5.21490 5.44872 5.64724 5.65286 5.72037 5.79708 5.88053 5.92992 6.04218 6.11560 6.19269 6.34252 6.55538 6.78246 6.94354 7.04029 7.18800 7.58970 7.71721 7.84574 7.97155 8.28494 8.34332 8.89083 9.51405 10.97512 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.003497 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.237631 B = 8005.757741 C = 8668.198030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.124 4.124 11 C 0.088 3.912 12 N -0.588 5.588 13 C 0.555 3.445 14 O -0.545 6.545 15 C -0.095 4.095 16 C -0.074 4.074 17 C -0.032 4.032 18 Cl -0.050 7.050 19 C -0.085 4.085 20 C -0.032 4.032 21 Cl -0.054 7.054 22 C -0.053 4.053 23 C 0.111 3.889 24 C -0.123 4.123 25 H 0.261 0.739 26 H 0.028 0.972 27 H 0.040 0.960 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.568 -12.307 -8.771 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.034 4.034 12 N -0.320 5.320 13 C 0.342 3.658 14 O -0.424 6.424 15 C -0.098 4.098 16 C -0.093 4.093 17 C -0.059 4.059 18 Cl -0.021 7.021 19 C -0.104 4.104 20 C -0.059 4.059 21 Cl -0.025 7.025 22 C -0.073 4.073 23 C -0.010 4.010 24 C -0.162 4.162 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.125 0.875 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.172 0.828 32 H 0.165 0.835 33 H 0.167 0.833 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.375 -12.614 -8.801 17.057 hybrid contribution 0.233 1.099 -0.187 1.139 sum -7.142 -11.515 -8.987 16.259 Atomic orbital electron populations 1.69820 1.05844 1.26545 1.50834 1.24948 0.94869 0.99061 0.94989 0.86618 0.79932 0.83492 0.78119 1.20720 1.21223 1.19941 1.21192 0.92974 0.90509 1.50417 0.92666 1.18651 0.92626 0.91811 0.93946 1.22051 1.00124 0.94280 0.99742 1.22553 0.92072 0.87728 1.01037 1.48169 1.36046 1.20306 1.27430 1.18018 0.84225 0.82290 0.81238 1.90760 1.38706 1.39915 1.73029 1.19865 0.93971 1.01134 0.94873 1.21642 0.91127 0.96288 1.00287 1.20597 0.87664 1.02832 0.94844 1.98403 1.20395 1.88131 1.95197 1.21029 0.95731 0.97562 0.96122 1.20564 0.94276 1.02832 0.88249 1.98391 1.94458 1.85190 1.24481 1.21183 0.99948 0.95634 0.90540 1.21795 0.91704 1.00127 0.87389 1.22010 0.98952 0.93975 1.01222 0.92926 0.95368 0.94146 0.87505 0.90535 0.91404 0.82764 0.83491 0.83298 0.91728 0.90039 0.91901 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.80 11.30 55.43 0.63 -23.18 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.51 -13.30 8.56 -34.44 -0.29 -13.59 16 8 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.05 1.10 2.06 -91.71 -0.19 0.91 16 10 C -0.12 -2.62 5.16 -26.59 -0.14 -2.75 16 11 C 0.09 1.47 4.78 -3.70 -0.02 1.45 16 12 N -0.59 -9.99 2.97 -173.87 -0.52 -10.51 16 13 C 0.56 9.31 7.38 -12.33 -0.09 9.22 16 14 O -0.54 -10.47 16.25 5.32 0.09 -10.39 16 15 C -0.09 -1.32 5.29 -104.98 -0.56 -1.87 16 16 C -0.07 -0.91 7.14 -39.14 -0.28 -1.19 16 17 C -0.03 -0.36 6.31 -39.56 -0.25 -0.61 16 18 Cl -0.05 -0.52 28.95 -51.86 -1.50 -2.02 16 19 C -0.08 -0.86 9.60 -39.43 -0.38 -1.24 16 20 C -0.03 -0.35 6.31 -39.56 -0.25 -0.60 16 21 Cl -0.05 -0.54 28.95 -51.86 -1.50 -2.04 16 22 C -0.05 -0.67 9.39 -39.14 -0.37 -1.04 16 23 C 0.11 1.92 6.44 -3.71 -0.02 1.89 16 24 C -0.12 -2.42 5.30 -26.61 -0.14 -2.56 16 25 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.11 2.53 6.03 -51.93 -0.31 2.22 16 29 H 0.08 1.15 4.46 -51.93 -0.23 0.92 16 30 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 31 H 0.15 1.83 6.06 -52.49 -0.32 1.51 16 32 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.15 1.85 8.01 -52.48 -0.42 1.43 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.39 7.00 -51.93 -0.36 1.02 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -27.48 332.73 -10.02 -37.50 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -4.14 Total: 0.59 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -3.07 Total: -10.44 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.11 Total: -33.69 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -3.00 Total: -4.06 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.48 -10.02 -37.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334814633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.933 kcal (2) G-P(sol) polarization free energy of solvation -27.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds