Wall clock time and date at job start Tue Mar 31 2020 15:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48501 * 109.46907 * 269.99417 * 3 2 1 5 5 H 1.48505 * 109.46802 * 29.99268 * 3 2 1 6 6 H 1.48491 * 109.47280 * 149.99339 * 3 2 1 7 7 C 1.37878 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00150 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.53074 * 109.43808 * 59.79114 * 9 7 2 11 11 C 1.53196 * 109.29161 * 181.23863 * 10 9 7 12 12 N 1.46933 * 108.89363 * 305.58018 * 11 10 9 13 13 C 1.34779 * 120.62858 * 233.52102 * 12 11 10 14 14 O 1.21553 * 119.99872 * 174.39343 * 13 12 11 15 15 C 1.47846 * 120.00259 * 354.38280 * 13 12 11 16 16 C 1.39567 * 120.13145 * 324.41868 * 15 13 12 17 17 C 1.38096 * 119.86123 * 179.74374 * 16 15 13 18 18 Cl 1.73591 * 119.93240 * 180.27517 * 17 16 15 19 19 C 1.38447 * 120.13104 * 0.53158 * 17 16 15 20 20 C 1.38444 * 120.27036 * 359.73765 * 19 17 16 21 21 Cl 1.73605 * 119.93394 * 179.97438 * 20 19 17 22 22 C 1.38087 * 120.13395 * 359.97438 * 20 19 17 23 23 C 1.46927 * 118.73778 * 53.53600 * 12 11 10 24 24 C 1.53038 * 109.46005 * 179.97438 * 9 7 2 25 25 H 0.96997 * 120.00104 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.45743 * 299.97486 * 9 7 2 27 27 H 1.09001 * 109.39249 * 61.36890 * 10 9 7 28 28 H 1.08993 * 109.62737 * 301.25023 * 10 9 7 29 29 H 1.09000 * 109.58585 * 185.72778 * 11 10 9 30 30 H 1.08994 * 109.58857 * 65.43523 * 11 10 9 31 31 H 1.07990 * 120.06951 * 359.97438 * 16 15 13 32 32 H 1.08000 * 119.86457 * 179.76833 * 19 17 16 33 33 H 1.08005 * 120.07105 * 180.02562 * 22 20 19 34 34 H 1.09003 * 109.58069 * 66.18043 * 23 12 11 35 35 H 1.09003 * 109.58429 * 186.46575 * 23 12 11 36 36 H 1.08996 * 109.49929 * 58.67902 * 24 9 7 37 37 H 1.08993 * 109.52324 * 298.59340 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 0.3679 -2.5775 -1.2472 11 6 -0.4196 -3.8914 -1.2282 12 7 0.5230 -5.0090 -1.0815 13 6 0.5125 -6.0353 -1.9552 14 8 1.3617 -6.9021 -1.8846 15 6 -0.5318 -6.1068 -2.9992 16 6 -1.8290 -5.6718 -2.7236 17 6 -2.7988 -5.7362 -3.7046 18 17 -4.4111 -5.1891 -3.3659 19 6 -2.4892 -6.2412 -4.9559 20 6 -1.2056 -6.6794 -5.2335 21 17 -0.8270 -7.3116 -6.8054 22 6 -0.2257 -6.6145 -4.2627 23 6 1.4768 -4.9866 0.0358 24 6 2.2459 -3.6622 0.0005 25 1 -0.4850 0.8400 -0.0004 26 1 0.6245 -2.5567 0.8906 27 1 0.9956 -2.5425 -2.1377 28 1 -0.3264 -1.7374 -1.2576 29 1 -0.9722 -3.9997 -2.1615 30 1 -1.1157 -3.8881 -0.3896 31 1 -2.0729 -5.2823 -1.7464 32 1 -3.2519 -6.2931 -5.7187 33 1 0.7754 -6.9562 -4.4805 34 1 0.9368 -5.0711 0.9789 35 1 2.1738 -5.8190 -0.0621 36 1 2.8882 -3.5915 0.8782 37 1 2.8562 -3.6194 -0.9014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334814633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:56 Heat of formation + Delta-G solvation = -36.024714 kcal Electronic energy + Delta-G solvation = -23053.625469 eV Core-core repulsion = 19460.839064 eV Total energy + Delta-G solvation = -3592.786405 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.80036 -39.94595 -38.46333 -37.85708 -37.32016 -35.42855 -33.57231 -32.30740 -31.98137 -31.33550 -28.19371 -25.83686 -24.51931 -24.02545 -23.51621 -21.73490 -20.38139 -18.82746 -18.29725 -17.88118 -17.33538 -16.85576 -16.47944 -16.27304 -16.11128 -15.55169 -15.06423 -14.98888 -14.80614 -14.54219 -14.32425 -13.96637 -13.49429 -13.40413 -13.26182 -13.18814 -12.86324 -12.76340 -12.47548 -12.32154 -12.17848 -12.13630 -12.03129 -11.94288 -11.49859 -11.16308 -11.01408 -10.78854 -10.39873 -10.17891 -9.87158 -9.62667 -8.07378 -6.19803 -0.49844 -0.23857 0.65067 1.08340 1.41633 1.44417 1.50047 1.52616 1.89083 2.33725 2.44944 3.17270 3.19838 3.68984 3.74123 3.81273 4.00277 4.06912 4.12703 4.26355 4.35224 4.42635 4.56350 4.68296 4.73531 4.81648 4.84655 4.87174 4.95035 5.15929 5.18508 5.24059 5.41107 5.50614 5.64661 5.99169 6.12070 6.33352 6.40573 6.89220 6.95251 7.47899 8.96006 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.003497 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.237631 B = 8005.757741 C = 8668.198030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.945 3.055 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.046 0.954 9 C 0.045 3.955 10 C -0.115 4.115 11 C 0.101 3.899 12 N -0.592 5.592 13 C 0.557 3.443 14 O -0.573 6.573 15 C -0.112 4.112 16 C -0.075 4.075 17 C -0.032 4.032 18 Cl -0.040 7.040 19 C -0.071 4.071 20 C -0.031 4.031 21 Cl -0.042 7.042 22 C -0.058 4.058 23 C 0.116 3.884 24 C -0.114 4.114 25 H 0.262 0.738 26 H 0.008 0.992 27 H 0.024 0.976 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.158 0.842 32 H 0.173 0.827 33 H 0.146 0.854 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.690 -12.812 -9.765 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.772 3.228 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.154 4.154 11 C -0.020 4.020 12 N -0.323 5.323 13 C 0.346 3.654 14 O -0.454 6.454 15 C -0.116 4.116 16 C -0.095 4.095 17 C -0.059 4.059 18 Cl -0.011 7.011 19 C -0.090 4.090 20 C -0.058 4.058 21 Cl -0.013 7.013 22 C -0.077 4.077 23 C -0.005 4.005 24 C -0.152 4.152 25 H 0.071 0.929 26 H 0.027 0.973 27 H 0.043 0.957 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.176 0.824 32 H 0.190 0.810 33 H 0.164 0.836 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.502 -13.121 -9.798 18.451 hybrid contribution 0.560 1.240 0.070 1.362 sum -7.942 -11.881 -9.728 17.288 Atomic orbital electron populations 1.69924 1.06690 1.27111 1.51178 1.25578 0.95664 1.01742 0.94858 0.85759 0.78852 0.80197 0.78042 1.20484 1.20828 1.19789 1.21541 0.92895 0.92293 1.50605 0.93559 1.18623 0.93039 0.91895 0.93765 1.21813 0.99437 0.95992 0.98121 1.22411 0.91452 0.85394 1.02793 1.48172 1.36010 1.20506 1.27574 1.18393 0.84327 0.81497 0.81184 1.90737 1.40120 1.40844 1.73733 1.19614 0.93857 1.03440 0.94662 1.21636 0.90766 0.96242 1.00817 1.20617 0.87866 1.02600 0.94828 1.98413 1.19514 1.87990 1.95193 1.21312 0.95831 0.95641 0.96233 1.20567 0.94217 1.02578 0.88457 1.98401 1.94453 1.84977 1.23422 1.21201 1.00358 0.95604 0.90575 1.21711 0.91924 0.98538 0.88368 1.21855 0.98357 0.94231 1.00789 0.92913 0.97339 0.95695 0.89934 0.88342 0.90267 0.82437 0.80966 0.83637 0.90187 0.89663 0.91462 0.94086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.00 11.30 21.45 0.24 -48.76 16 2 C 0.02 1.10 5.30 84.65 0.45 1.54 16 3 Si 0.94 42.17 29.54 68.60 2.03 44.20 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.54 -28.24 8.56 25.60 0.22 -28.02 16 8 H 0.05 2.46 7.74 -2.91 -0.02 2.43 16 9 C 0.05 2.10 2.06 -11.50 -0.02 2.08 16 10 C -0.11 -4.93 5.16 30.68 0.16 -4.77 16 11 C 0.10 3.32 4.78 86.36 0.41 3.73 16 12 N -0.59 -19.72 2.97 -822.27 -2.45 -22.17 16 13 C 0.56 18.33 7.38 86.79 0.64 18.97 16 14 O -0.57 -21.89 16.25 -3.88 -0.06 -21.95 16 15 C -0.11 -2.99 5.29 -20.09 -0.11 -3.09 16 16 C -0.08 -1.72 7.14 22.56 0.16 -1.56 16 17 C -0.03 -0.63 6.31 22.29 0.14 -0.49 16 18 Cl -0.04 -0.73 28.95 -2.72 -0.08 -0.81 16 19 C -0.07 -1.23 9.60 22.37 0.21 -1.02 16 20 C -0.03 -0.61 6.31 22.28 0.14 -0.47 16 21 Cl -0.04 -0.73 28.95 -2.72 -0.08 -0.81 16 22 C -0.06 -1.38 9.39 22.55 0.21 -1.17 16 23 C 0.12 3.94 6.44 86.36 0.56 4.50 16 24 C -0.11 -4.51 5.30 30.67 0.16 -4.34 16 25 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 26 H 0.01 0.42 8.14 -2.39 -0.02 0.41 16 27 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 3.97 6.03 -2.39 -0.01 3.96 16 29 H 0.10 2.83 4.46 -2.39 -0.01 2.82 16 30 H 0.08 2.45 8.05 -2.39 -0.02 2.43 16 31 H 0.16 3.44 6.06 -2.92 -0.02 3.42 16 32 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.15 3.53 8.01 -2.91 -0.02 3.51 16 34 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.08 2.86 7.00 -2.39 -0.02 2.84 16 36 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -58.64 332.73 4.04 -54.60 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.11 Total: 9.81 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 3.34 Total: -14.11 kcal Atomic # 7 Polarization: -68.73 SS G_CDS: -2.20 Total: -70.93 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.06 Total: -21.95 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.16 Total: -1.62 kcal Total: -58.64 4.04 -54.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334814633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.574 kcal (2) G-P(sol) polarization free energy of solvation -58.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds