Wall clock time and date at job start Tue Mar 31 2020 15:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00184 * 2 1 4 4 H 1.48498 * 109.47285 * 269.99788 * 3 2 1 5 5 H 1.48501 * 109.46926 * 30.00385 * 3 2 1 6 6 H 1.48507 * 109.46875 * 150.00201 * 3 2 1 7 7 C 1.37879 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00268 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.53077 * 109.44239 * 59.79339 * 9 7 2 11 11 C 1.53195 * 109.29218 * 181.23832 * 10 9 7 12 12 N 1.46932 * 108.89357 * 305.57808 * 11 10 9 13 13 C 1.34777 * 120.62715 * 233.52131 * 12 11 10 14 14 O 1.21563 * 119.99397 * 174.39725 * 13 12 11 15 15 C 1.47782 * 120.00212 * 354.39063 * 13 12 11 16 16 C 1.39639 * 120.12323 * 144.67209 * 15 13 12 17 17 C 1.37878 * 119.88771 * 179.97438 * 16 15 13 18 18 C 1.38507 * 120.15094 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 119.87126 * 179.97438 * 18 17 16 20 20 C 1.38587 * 120.25385 * 359.95210 * 18 17 16 21 21 Cl 1.73599 * 119.94857 * 180.02562 * 20 18 17 22 22 C 1.38041 * 120.10754 * 359.79140 * 20 18 17 23 23 C 1.46919 * 118.73524 * 53.53854 * 12 11 10 24 24 C 1.53036 * 109.45968 * 180.02562 * 9 7 2 25 25 H 0.97007 * 119.99643 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.45838 * 299.96949 * 9 7 2 27 27 H 1.08995 * 109.38658 * 61.36433 * 10 9 7 28 28 H 1.08996 * 109.61924 * 301.25647 * 10 9 7 29 29 H 1.09001 * 109.58142 * 185.72491 * 11 10 9 30 30 H 1.08993 * 109.58578 * 65.43636 * 11 10 9 31 31 H 1.07999 * 120.05315 * 359.95486 * 16 15 13 32 32 H 1.08006 * 119.92157 * 179.97438 * 17 16 15 33 33 H 1.07990 * 120.07632 * 180.25575 * 22 20 18 34 34 H 1.08998 * 109.58831 * 66.18068 * 23 12 11 35 35 H 1.09007 * 109.58185 * 186.46343 * 23 12 11 36 36 H 1.08997 * 109.50084 * 58.67713 * 24 9 7 37 37 H 1.09000 * 109.49680 * 298.57761 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 0.3677 -2.5764 -1.2496 11 6 -0.4198 -3.8903 -1.2317 12 7 0.5227 -5.0081 -1.0859 13 6 0.5122 -6.0335 -1.9604 14 8 1.3614 -6.9006 -1.8905 15 6 -0.5316 -6.1040 -3.0042 16 6 -0.2252 -6.6109 -4.2687 17 6 -1.2029 -6.6748 -5.2387 18 6 -2.4875 -6.2372 -4.9616 19 17 -3.7128 -6.3204 -6.1886 20 6 -2.7984 -5.7334 -3.7086 21 17 -4.4112 -5.1877 -3.3697 22 6 -1.8290 -5.6695 -2.7279 23 6 1.4765 -4.9866 0.0314 24 6 2.2456 -3.6622 -0.0015 25 1 -0.4850 0.8401 -0.0004 26 1 0.6244 -2.5575 0.8884 27 1 0.9954 -2.5406 -2.1399 28 1 -0.3265 -1.7362 -1.2592 29 1 -0.9725 -3.9978 -2.1650 30 1 -1.1159 -3.8877 -0.3930 31 1 0.7761 -6.9519 -4.4866 32 1 -0.9664 -7.0664 -6.2171 33 1 -2.0729 -5.2807 -1.7504 34 1 0.9365 -5.0719 0.9744 35 1 2.1734 -5.8189 -0.0672 36 1 2.8873 -3.5919 0.8768 37 1 2.8563 -3.6188 -0.9033 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335763276.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:45 Heat of formation + Delta-G solvation = -23.093924 kcal Electronic energy + Delta-G solvation = -23082.089098 eV Core-core repulsion = 19489.863415 eV Total energy + Delta-G solvation = -3592.225684 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.58613 -38.82519 -37.00537 -36.78886 -36.57225 -33.71958 -32.14028 -31.08463 -30.71444 -29.95997 -26.47282 -24.34325 -23.44753 -22.62015 -22.18683 -20.29116 -18.92867 -17.43471 -17.17103 -16.36687 -16.26580 -15.61970 -15.10665 -14.82455 -14.58701 -14.24280 -14.12166 -13.80611 -13.13366 -12.94129 -12.85777 -12.48983 -12.44376 -12.12671 -12.10823 -11.77017 -11.50305 -11.37777 -11.22791 -11.10495 -10.96991 -10.70007 -10.46006 -10.18758 -9.85301 -9.64277 -9.26698 -9.25145 -8.98829 -8.90786 -8.43578 -8.14060 -6.07880 -4.14002 0.40464 0.77766 1.55550 1.91824 2.64315 3.14956 3.25629 3.33108 3.36082 3.46525 4.28716 4.37367 4.44697 4.75381 4.82763 4.95844 5.21640 5.31616 5.45902 5.50281 5.67287 5.71723 5.81090 5.93557 5.96082 6.05020 6.18920 6.19830 6.34641 6.55671 6.78503 6.94616 7.04208 7.19165 7.59319 7.72606 7.84773 7.97414 8.29596 8.34481 8.89234 9.51549 10.97700 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.003544 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.833530 B = 7898.733245 C = 8969.445262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.123 4.123 11 C 0.087 3.913 12 N -0.589 5.589 13 C 0.554 3.446 14 O -0.546 6.546 15 C -0.104 4.104 16 C -0.050 4.050 17 C -0.107 4.107 18 C -0.015 4.015 19 Cl -0.048 7.048 20 C -0.040 4.040 21 Cl -0.043 7.043 22 C -0.068 4.068 23 C 0.111 3.889 24 C -0.123 4.123 25 H 0.261 0.739 26 H 0.028 0.972 27 H 0.040 0.960 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.321 -12.434 -8.976 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.034 4.034 12 N -0.320 5.320 13 C 0.341 3.659 14 O -0.426 6.426 15 C -0.107 4.107 16 C -0.070 4.070 17 C -0.125 4.125 18 C -0.043 4.043 19 Cl -0.019 7.019 20 C -0.067 4.067 21 Cl -0.014 7.014 22 C -0.087 4.087 23 C -0.010 4.010 24 C -0.161 4.161 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.125 0.875 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.174 0.826 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.282 -12.689 -8.974 17.163 hybrid contribution 0.094 1.161 -0.122 1.171 sum -7.188 -11.528 -9.096 16.349 Atomic orbital electron populations 1.69822 1.05850 1.26548 1.50798 1.24948 0.94867 0.99063 0.94990 0.86620 0.79930 0.83501 0.78117 1.20719 1.21220 1.19942 1.21190 0.92964 0.90511 1.50451 0.92672 1.18650 0.92627 0.91811 0.93943 1.22049 1.00118 0.94298 0.99725 1.22547 0.92076 0.87736 1.01041 1.48177 1.36017 1.20398 1.27404 1.18073 0.84300 0.82227 0.81261 1.90756 1.38814 1.39915 1.73117 1.20072 0.93762 1.01243 0.95656 1.21285 1.00178 0.94710 0.90785 1.20994 0.90089 1.00555 1.00894 1.20976 0.91514 1.02280 0.89496 1.98395 1.53751 1.96681 1.53058 1.20627 0.88523 1.03709 0.93859 1.98405 1.19835 1.88010 1.95115 1.21520 0.90918 0.96466 0.99795 1.21784 0.91724 1.00101 0.87426 1.22008 0.98950 0.93990 1.01194 0.92917 0.95389 0.94156 0.87509 0.90535 0.91430 0.83399 0.83380 0.82574 0.91772 0.90059 0.91907 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.87 11.30 55.43 0.63 -23.24 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.51 -13.31 8.56 -34.44 -0.29 -13.61 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.10 2.06 -91.71 -0.19 0.91 16 10 C -0.12 -2.62 5.16 -26.59 -0.14 -2.76 16 11 C 0.09 1.48 4.78 -3.71 -0.02 1.46 16 12 N -0.59 -9.99 2.97 -173.90 -0.52 -10.51 16 13 C 0.55 9.20 7.38 -12.36 -0.09 9.11 16 14 O -0.55 -10.37 16.25 5.31 0.09 -10.29 16 15 C -0.10 -1.42 5.29 -104.97 -0.56 -1.98 16 16 C -0.05 -0.59 9.61 -39.19 -0.38 -0.96 16 17 C -0.11 -1.06 9.81 -39.61 -0.39 -1.45 16 18 C -0.01 -0.16 6.33 -39.35 -0.25 -0.41 16 19 Cl -0.05 -0.48 27.94 -51.86 -1.45 -1.93 16 20 C -0.04 -0.47 6.32 -39.52 -0.25 -0.72 16 21 Cl -0.04 -0.49 27.94 -51.86 -1.45 -1.94 16 22 C -0.07 -0.85 7.13 -39.15 -0.28 -1.13 16 23 C 0.11 1.91 6.44 -3.71 -0.02 1.89 16 24 C -0.12 -2.41 5.31 -26.61 -0.14 -2.55 16 25 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.11 2.54 6.03 -51.93 -0.31 2.23 16 29 H 0.08 1.16 4.46 -51.93 -0.23 0.93 16 30 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 31 H 0.15 1.58 8.01 -52.49 -0.42 1.16 16 32 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.16 1.90 6.06 -52.49 -0.32 1.58 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.38 7.00 -51.92 -0.36 1.02 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 331.15 15.07 4.99 4.99 Total: -1.00 -27.83 331.15 -9.96 -37.79 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.14 Total: 0.30 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -3.09 Total: -10.65 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.11 Total: -33.75 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -2.90 Total: -3.87 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.83 -9.96 -37.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335763276.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.698 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds