Wall clock time and date at job start Tue Mar 31 2020 15:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00184 * 2 1 4 4 H 1.48498 * 109.47285 * 269.99788 * 3 2 1 5 5 H 1.48501 * 109.46926 * 30.00385 * 3 2 1 6 6 H 1.48507 * 109.46875 * 150.00201 * 3 2 1 7 7 C 1.37879 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00268 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.53077 * 109.44239 * 59.79339 * 9 7 2 11 11 C 1.53195 * 109.29218 * 181.23832 * 10 9 7 12 12 N 1.46932 * 108.89357 * 305.57808 * 11 10 9 13 13 C 1.34777 * 120.62715 * 233.52131 * 12 11 10 14 14 O 1.21563 * 119.99397 * 174.39725 * 13 12 11 15 15 C 1.47782 * 120.00212 * 354.39063 * 13 12 11 16 16 C 1.39639 * 120.12323 * 144.67209 * 15 13 12 17 17 C 1.37878 * 119.88771 * 179.97438 * 16 15 13 18 18 C 1.38507 * 120.15094 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 119.87126 * 179.97438 * 18 17 16 20 20 C 1.38587 * 120.25385 * 359.95210 * 18 17 16 21 21 Cl 1.73599 * 119.94857 * 180.02562 * 20 18 17 22 22 C 1.38041 * 120.10754 * 359.79140 * 20 18 17 23 23 C 1.46919 * 118.73524 * 53.53854 * 12 11 10 24 24 C 1.53036 * 109.45968 * 180.02562 * 9 7 2 25 25 H 0.97007 * 119.99643 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.45838 * 299.96949 * 9 7 2 27 27 H 1.08995 * 109.38658 * 61.36433 * 10 9 7 28 28 H 1.08996 * 109.61924 * 301.25647 * 10 9 7 29 29 H 1.09001 * 109.58142 * 185.72491 * 11 10 9 30 30 H 1.08993 * 109.58578 * 65.43636 * 11 10 9 31 31 H 1.07999 * 120.05315 * 359.95486 * 16 15 13 32 32 H 1.08006 * 119.92157 * 179.97438 * 17 16 15 33 33 H 1.07990 * 120.07632 * 180.25575 * 22 20 18 34 34 H 1.08998 * 109.58831 * 66.18068 * 23 12 11 35 35 H 1.09007 * 109.58185 * 186.46343 * 23 12 11 36 36 H 1.08997 * 109.50084 * 58.67713 * 24 9 7 37 37 H 1.09000 * 109.49680 * 298.57761 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 0.3677 -2.5764 -1.2496 11 6 -0.4198 -3.8903 -1.2317 12 7 0.5227 -5.0081 -1.0859 13 6 0.5122 -6.0335 -1.9604 14 8 1.3614 -6.9006 -1.8905 15 6 -0.5316 -6.1040 -3.0042 16 6 -0.2252 -6.6109 -4.2687 17 6 -1.2029 -6.6748 -5.2387 18 6 -2.4875 -6.2372 -4.9616 19 17 -3.7128 -6.3204 -6.1886 20 6 -2.7984 -5.7334 -3.7086 21 17 -4.4112 -5.1877 -3.3697 22 6 -1.8290 -5.6695 -2.7279 23 6 1.4765 -4.9866 0.0314 24 6 2.2456 -3.6622 -0.0015 25 1 -0.4850 0.8401 -0.0004 26 1 0.6244 -2.5575 0.8884 27 1 0.9954 -2.5406 -2.1399 28 1 -0.3265 -1.7362 -1.2592 29 1 -0.9725 -3.9978 -2.1650 30 1 -1.1159 -3.8877 -0.3930 31 1 0.7761 -6.9519 -4.4866 32 1 -0.9664 -7.0664 -6.2171 33 1 -2.0729 -5.2807 -1.7504 34 1 0.9365 -5.0719 0.9744 35 1 2.1734 -5.8189 -0.0672 36 1 2.8873 -3.5919 0.8768 37 1 2.8563 -3.6188 -0.9033 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335763276.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:45 Heat of formation + Delta-G solvation = -35.948286 kcal Electronic energy + Delta-G solvation = -23082.646505 eV Core-core repulsion = 19489.863415 eV Total energy + Delta-G solvation = -3592.783091 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.77259 -39.92803 -38.46354 -37.64652 -37.53342 -35.43019 -33.56035 -32.28200 -31.95775 -31.33876 -28.16271 -25.73020 -24.56606 -24.01540 -23.52713 -21.69990 -20.34956 -18.77503 -18.32967 -18.00992 -17.42358 -16.85169 -16.47415 -16.15226 -16.06435 -15.27529 -15.09410 -15.08234 -14.73019 -14.54010 -14.38160 -13.96831 -13.55187 -13.29185 -13.20718 -12.97949 -12.88451 -12.80458 -12.49127 -12.41444 -12.20366 -12.14366 -11.98011 -11.94896 -11.49728 -11.14414 -11.01307 -10.79926 -10.40650 -10.05727 -9.93761 -9.59941 -8.07545 -6.20172 -0.55753 -0.11569 0.68295 1.03022 1.41556 1.44233 1.49387 1.52508 1.90593 2.38667 2.44848 3.19531 3.25632 3.44504 3.83019 3.91376 4.05651 4.05996 4.24970 4.32629 4.41233 4.48492 4.55842 4.62363 4.69074 4.81615 4.84891 4.94268 5.00791 5.18549 5.22981 5.31380 5.41362 5.51064 5.64453 5.98838 6.12045 6.35029 6.40347 6.89147 6.97477 7.47659 8.95808 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.003544 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.833530 B = 7898.733245 C = 8969.445262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 0.945 3.055 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.047 0.953 9 C 0.045 3.955 10 C -0.115 4.115 11 C 0.101 3.899 12 N -0.593 5.593 13 C 0.556 3.444 14 O -0.572 6.572 15 C -0.122 4.122 16 C -0.049 4.049 17 C -0.093 4.093 18 C -0.015 4.015 19 Cl -0.037 7.037 20 C -0.046 4.046 21 Cl -0.041 7.041 22 C -0.071 4.071 23 C 0.116 3.884 24 C -0.114 4.114 25 H 0.261 0.739 26 H 0.007 0.993 27 H 0.025 0.975 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.157 0.843 32 H 0.180 0.820 33 H 0.157 0.843 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.792 -13.201 -10.221 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.772 3.228 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.065 0.935 9 C 0.027 3.973 10 C -0.153 4.153 11 C -0.020 4.020 12 N -0.324 5.324 13 C 0.346 3.654 14 O -0.454 6.454 15 C -0.126 4.126 16 C -0.068 4.068 17 C -0.111 4.111 18 C -0.043 4.043 19 Cl -0.008 7.008 20 C -0.073 4.073 21 Cl -0.012 7.012 22 C -0.090 4.090 23 C -0.006 4.006 24 C -0.152 4.152 25 H 0.071 0.929 26 H 0.025 0.975 27 H 0.044 0.956 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.175 0.825 32 H 0.198 0.802 33 H 0.175 0.825 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.757 -13.460 -10.222 18.597 hybrid contribution 0.213 1.380 0.215 1.413 sum -7.544 -12.080 -10.007 17.406 Atomic orbital electron populations 1.69932 1.06748 1.27103 1.51200 1.25591 0.95652 1.01801 0.94863 0.85750 0.78849 0.80141 0.78062 1.20442 1.20891 1.19721 1.21543 0.92913 0.92263 1.50575 0.93479 1.18622 0.93046 0.91969 0.93691 1.21809 0.99424 0.95937 0.98178 1.22380 0.91457 0.85515 1.02653 1.48180 1.35968 1.20632 1.27615 1.18450 0.84414 0.81389 0.81176 1.90735 1.40155 1.40723 1.73769 1.19907 0.93361 1.03515 0.95802 1.21450 1.01065 0.94017 0.90240 1.21285 0.89011 0.99115 1.01693 1.21158 0.92203 1.01557 0.89408 1.98406 1.53390 1.96548 1.52424 1.20675 0.88514 1.03993 0.94165 1.98407 1.19619 1.88015 1.95164 1.21458 0.90731 0.96715 1.00090 1.21696 0.91935 0.98562 0.88359 1.21850 0.98325 0.94184 1.00822 0.92937 0.97500 0.95567 0.90060 0.88433 0.90548 0.82547 0.80228 0.82524 0.90405 0.89561 0.91477 0.93974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.37 11.30 21.45 0.24 -49.13 16 2 C 0.02 1.06 5.30 84.66 0.45 1.51 16 3 Si 0.95 42.24 29.54 68.60 2.03 44.27 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.53 -28.24 8.56 25.60 0.22 -28.03 16 8 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 9 C 0.05 2.10 2.06 -11.50 -0.02 2.08 16 10 C -0.11 -4.95 5.16 30.69 0.16 -4.79 16 11 C 0.10 3.38 4.78 86.36 0.41 3.79 16 12 N -0.59 -19.71 2.97 -822.38 -2.45 -22.16 16 13 C 0.56 17.94 7.38 86.77 0.64 18.58 16 14 O -0.57 -21.25 16.25 -3.91 -0.06 -21.31 16 15 C -0.12 -3.17 5.29 -20.09 -0.11 -3.27 16 16 C -0.05 -1.02 9.61 22.52 0.22 -0.80 16 17 C -0.09 -1.56 9.81 22.25 0.22 -1.34 16 18 C -0.02 -0.30 6.33 22.42 0.14 -0.16 16 19 Cl -0.04 -0.65 27.94 -2.72 -0.08 -0.73 16 20 C -0.05 -1.00 6.32 22.31 0.14 -0.86 16 21 Cl -0.04 -0.88 27.94 -2.72 -0.08 -0.96 16 22 C -0.07 -1.67 7.13 22.55 0.16 -1.51 16 23 C 0.12 3.93 6.44 86.36 0.56 4.49 16 24 C -0.11 -4.47 5.31 30.67 0.16 -4.31 16 25 H 0.26 13.58 8.31 -92.70 -0.77 12.81 16 26 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 3.95 6.03 -2.39 -0.01 3.93 16 29 H 0.10 2.86 4.46 -2.39 -0.01 2.85 16 30 H 0.08 2.43 8.05 -2.39 -0.02 2.41 16 31 H 0.16 3.00 8.01 -2.91 -0.02 2.98 16 32 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.16 3.61 6.06 -2.92 -0.02 3.59 16 34 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.09 2.86 7.00 -2.38 -0.02 2.84 16 36 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -59.42 331.15 4.06 -55.36 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.11 Total: 9.27 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 3.35 Total: -14.62 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -2.20 Total: -71.28 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.06 Total: -21.31 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.15 Total: -1.68 kcal Total: -59.42 4.06 -55.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335763276.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.411 kcal (2) G-P(sol) polarization free energy of solvation -59.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds