Wall clock time and date at job start Tue Mar 31 2020 15:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.47225 * 121.32573 * 179.71916 * 13 11 10 15 15 C 1.53320 * 107.61514 * 115.79242 * 14 13 11 16 16 C 1.50603 * 110.81465 * 47.71225 * 15 14 13 17 17 C 1.39068 * 117.60564 * 160.33134 * 16 15 14 18 18 Cl 1.73603 * 119.72540 * 358.87434 * 17 16 15 19 19 C 1.38136 * 120.54619 * 178.84728 * 17 16 15 20 20 Cl 1.73604 * 120.10906 * 180.02562 * 19 17 16 21 21 C 1.38352 * 119.78135 * 0.05224 * 19 17 16 22 22 C 1.37956 * 119.71976 * 0.24287 * 21 19 17 23 23 C 1.37664 * 122.86297 * 339.66042 * 16 15 14 24 24 C 1.46672 * 121.33074 * 0.02562 * 13 11 10 25 25 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 1.09001 * 109.77843 * 235.38349 * 14 13 11 31 31 H 1.09004 * 109.77659 * 356.18564 * 14 13 11 32 32 H 1.09006 * 109.32035 * 287.30468 * 15 14 13 33 33 H 1.08997 * 109.07971 * 167.96863 * 15 14 13 34 34 H 1.07997 * 120.14417 * 180.21945 * 21 19 17 35 35 H 1.07998 * 119.72134 * 179.97438 * 22 21 19 36 36 H 1.09004 * 109.43638 * 344.40682 * 24 13 11 37 37 H 1.09004 * 109.43260 * 104.26389 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9671 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 1.4590 -7.4261 0.0075 15 6 1.7877 -8.1416 -1.3081 16 6 3.2687 -8.1086 -1.5797 17 6 3.7804 -9.0407 -2.4759 18 17 2.7191 -10.2023 -3.2095 19 6 5.1261 -9.0496 -2.7877 20 17 5.7527 -10.2180 -3.9085 21 6 5.9730 -8.1248 -2.2033 22 6 5.4675 -7.2035 -1.3095 23 6 4.1156 -7.1957 -0.9929 24 6 3.6318 -6.1685 0.0003 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8902 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 1.7975 -8.0272 0.8515 31 1 0.3845 -7.2584 0.0807 32 1 1.2620 -7.6504 -2.1269 33 1 1.4584 -9.1785 -1.2416 34 1 7.0254 -8.1242 -2.4455 35 1 6.1286 -6.4818 -0.8530 36 1 4.0173 -5.1871 -0.2760 37 1 3.9888 -6.4303 0.9963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335862414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:56 Heat of formation + Delta-G solvation = -35.405552 kcal Electronic energy + Delta-G solvation = -22517.907174 eV Core-core repulsion = 18925.147618 eV Total energy + Delta-G solvation = -3592.759556 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.71614 -39.09378 -37.11295 -36.86387 -35.80600 -33.64833 -33.11471 -31.44548 -31.04374 -29.58069 -26.35516 -25.49030 -24.04714 -22.79894 -21.85382 -20.56407 -18.53472 -17.48380 -17.12499 -16.36841 -16.11113 -15.79076 -15.46453 -15.15080 -14.76568 -14.45076 -14.06619 -13.97254 -13.58860 -13.36086 -12.80200 -12.74309 -12.62330 -12.23646 -12.17394 -11.96851 -11.81896 -11.53637 -11.31712 -11.17574 -11.10770 -10.97807 -10.93369 -10.63136 -9.99980 -9.68527 -9.24963 -9.10332 -9.06856 -8.93104 -8.58233 -8.33977 -5.98238 -4.03034 0.57080 0.72012 1.51508 1.88690 3.01053 3.08348 3.12507 3.32687 3.37853 3.39165 4.15489 4.25163 4.44597 4.53637 4.67481 4.82447 4.91226 5.01441 5.10619 5.19681 5.25826 5.36713 5.41500 5.50999 5.57456 5.69520 5.82952 5.85143 6.01844 6.13201 6.14526 6.23088 6.53592 6.82891 7.62048 7.71043 7.82384 8.04085 8.34669 8.63230 9.04937 9.60643 11.12658 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.019812 B = 0.002737 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.943548 B =10226.081933 C =11022.787282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.518 3.482 12 O -0.527 6.527 13 N -0.629 5.629 14 C 0.112 3.888 15 C -0.101 4.101 16 C -0.044 4.044 17 C -0.035 4.035 18 Cl -0.048 7.048 19 C -0.031 4.031 20 Cl -0.053 7.053 21 C -0.102 4.102 22 C -0.095 4.095 23 C -0.076 4.076 24 C 0.150 3.850 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.108 0.892 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.982 -22.270 -3.525 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.308 3.692 12 O -0.402 6.402 13 N -0.365 5.365 14 C -0.011 4.011 15 C -0.139 4.139 16 C -0.045 4.045 17 C -0.062 4.062 18 Cl -0.019 7.019 19 C -0.059 4.059 20 Cl -0.024 7.024 21 C -0.121 4.121 22 C -0.114 4.114 23 C -0.077 4.077 24 C 0.027 3.973 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.126 0.874 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.071 -22.320 -3.691 25.642 hybrid contribution 0.645 0.562 -0.329 0.917 sum 12.717 -21.758 -4.020 25.520 Atomic orbital electron populations 1.69987 1.06066 1.26746 1.49975 1.25022 0.94824 0.99226 0.95258 0.86652 0.79559 0.83180 0.78546 1.20238 1.21279 1.20227 1.21162 0.92858 0.90981 1.51679 0.92656 1.18902 0.93146 0.89309 0.98658 1.21916 1.00844 0.91843 1.02332 1.21581 0.88430 0.85129 0.74013 1.90673 1.14268 1.86911 1.48311 1.48286 1.05817 1.06249 1.76111 1.21611 0.99822 0.83947 0.95712 1.21055 0.90462 1.02454 0.99926 1.19348 0.96776 0.93329 0.95032 1.20824 0.89784 0.95793 0.99811 1.98381 1.65095 1.57226 1.81199 1.20680 0.92026 0.95680 0.97469 1.98389 1.86799 1.57170 1.60052 1.20946 1.00023 0.94166 0.96996 1.21152 0.94581 0.98491 0.97128 1.20000 0.93273 0.96467 0.97993 1.20519 0.81042 0.98570 0.97186 0.92855 0.95833 0.95771 0.90109 0.90187 0.91111 0.88007 0.89119 0.89066 0.83842 0.83863 0.87360 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.67 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 10 C -0.13 -2.52 4.06 -27.88 -0.11 -2.63 16 11 C 0.52 9.65 7.72 -10.98 -0.08 9.56 16 12 O -0.53 -12.04 15.47 5.56 0.09 -11.96 16 13 N -0.63 -8.67 2.93 -174.05 -0.51 -9.18 16 14 C 0.11 1.33 6.47 -3.48 -0.02 1.30 16 15 C -0.10 -1.08 5.27 -27.76 -0.15 -1.23 16 16 C -0.04 -0.47 5.76 -104.57 -0.60 -1.07 16 17 C -0.03 -0.36 6.31 -39.31 -0.25 -0.61 16 18 Cl -0.05 -0.49 26.17 -51.86 -1.36 -1.85 16 19 C -0.03 -0.30 6.32 -39.58 -0.25 -0.55 16 20 Cl -0.05 -0.49 27.94 -51.86 -1.45 -1.94 16 21 C -0.10 -0.83 9.84 -39.64 -0.39 -1.22 16 22 C -0.09 -0.75 9.62 -39.46 -0.38 -1.13 16 23 C -0.08 -0.74 5.82 -104.54 -0.61 -1.35 16 24 C 0.15 1.54 6.08 -5.03 -0.03 1.50 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 29 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 1.37 7.07 -51.93 -0.37 1.00 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.09 0.84 7.09 -51.93 -0.37 0.47 16 34 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.14 0.76 8.05 -52.49 -0.42 0.34 16 36 H 0.11 1.06 6.19 -51.93 -0.32 0.74 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -33.27 337.59 -10.20 -43.47 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -4.37 Total: -3.60 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -3.41 Total: -9.96 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.23 Total: -35.57 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -2.81 Total: -3.79 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.27 -10.20 -43.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335862414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.067 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds