Wall clock time and date at job start Tue Mar 31 2020 15:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.47225 * 121.32573 * 179.71916 * 13 11 10 15 15 C 1.53320 * 107.61514 * 115.79242 * 14 13 11 16 16 C 1.50603 * 110.81465 * 47.71225 * 15 14 13 17 17 C 1.39068 * 117.60564 * 160.33134 * 16 15 14 18 18 Cl 1.73603 * 119.72540 * 358.87434 * 17 16 15 19 19 C 1.38136 * 120.54619 * 178.84728 * 17 16 15 20 20 Cl 1.73604 * 120.10906 * 180.02562 * 19 17 16 21 21 C 1.38352 * 119.78135 * 0.05224 * 19 17 16 22 22 C 1.37956 * 119.71976 * 0.24287 * 21 19 17 23 23 C 1.37664 * 122.86297 * 339.66042 * 16 15 14 24 24 C 1.46672 * 121.33074 * 0.02562 * 13 11 10 25 25 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 1.09001 * 109.77843 * 235.38349 * 14 13 11 31 31 H 1.09004 * 109.77659 * 356.18564 * 14 13 11 32 32 H 1.09006 * 109.32035 * 287.30468 * 15 14 13 33 33 H 1.08997 * 109.07971 * 167.96863 * 15 14 13 34 34 H 1.07997 * 120.14417 * 180.21945 * 21 19 17 35 35 H 1.07998 * 119.72134 * 179.97438 * 22 21 19 36 36 H 1.09004 * 109.43638 * 344.40682 * 24 13 11 37 37 H 1.09004 * 109.43260 * 104.26389 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9671 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 1.4590 -7.4261 0.0075 15 6 1.7877 -8.1416 -1.3081 16 6 3.2687 -8.1086 -1.5797 17 6 3.7804 -9.0407 -2.4759 18 17 2.7191 -10.2023 -3.2095 19 6 5.1261 -9.0496 -2.7877 20 17 5.7527 -10.2180 -3.9085 21 6 5.9730 -8.1248 -2.2033 22 6 5.4675 -7.2035 -1.3095 23 6 4.1156 -7.1957 -0.9929 24 6 3.6318 -6.1685 0.0003 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8902 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 1.7975 -8.0272 0.8515 31 1 0.3845 -7.2584 0.0807 32 1 1.2620 -7.6504 -2.1269 33 1 1.4584 -9.1785 -1.2416 34 1 7.0254 -8.1242 -2.4455 35 1 6.1286 -6.4818 -0.8530 36 1 4.0173 -5.1871 -0.2760 37 1 3.9888 -6.4303 0.9963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335862414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:56 Heat of formation + Delta-G solvation = -54.270825 kcal Electronic energy + Delta-G solvation = -22518.725234 eV Core-core repulsion = 18925.147618 eV Total energy + Delta-G solvation = -3593.577616 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.64309 -40.27680 -37.96545 -37.60931 -36.80924 -35.58729 -34.18127 -32.84288 -32.27284 -30.50747 -27.94666 -26.66752 -25.13983 -23.70413 -23.23561 -21.79049 -19.73172 -18.84711 -18.19894 -17.67725 -17.22502 -16.96555 -16.41207 -16.39490 -16.26579 -15.77318 -14.99020 -14.84527 -14.66967 -14.49051 -14.19805 -13.99481 -13.59974 -13.54651 -13.25641 -13.16368 -12.86617 -12.75210 -12.60909 -12.51095 -12.37642 -12.02633 -11.88954 -11.88148 -11.77655 -11.55898 -11.29781 -10.72540 -10.53666 -9.87963 -9.77423 -9.53714 -8.15592 -6.29606 -0.12958 0.02436 0.78962 1.17303 1.44380 1.48706 1.56263 1.66514 1.95309 2.34034 2.45255 3.17720 3.39356 3.50311 3.70051 3.83055 3.96814 4.16872 4.19209 4.24055 4.34583 4.44071 4.47634 4.57290 4.62505 4.73196 4.79209 4.94686 4.96634 5.04170 5.06945 5.31244 5.46319 5.54255 5.57264 5.64922 5.87404 6.19305 6.36214 6.89090 7.22863 7.40870 8.96951 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.019812 B = 0.002737 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.943548 B =10226.081933 C =11022.787282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.042 3.958 10 C -0.117 4.117 11 C 0.516 3.484 12 O -0.586 6.586 13 N -0.617 5.617 14 C 0.110 3.890 15 C -0.093 4.093 16 C -0.060 4.060 17 C -0.047 4.047 18 Cl -0.055 7.055 19 C -0.041 4.041 20 Cl -0.054 7.054 21 C -0.098 4.098 22 C -0.083 4.083 23 C -0.083 4.083 24 C 0.144 3.856 25 H 0.262 0.738 26 H -0.021 1.021 27 H -0.018 1.018 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.169 0.831 35 H 0.177 0.823 36 H 0.119 0.881 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.994 -22.331 -3.147 28.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.185 1.185 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.005 3.995 10 C -0.156 4.156 11 C 0.307 3.693 12 O -0.465 6.465 13 N -0.351 5.351 14 C -0.012 4.012 15 C -0.131 4.131 16 C -0.062 4.062 17 C -0.075 4.075 18 Cl -0.026 7.026 19 C -0.069 4.069 20 Cl -0.025 7.025 21 C -0.116 4.116 22 C -0.102 4.102 23 C -0.084 4.084 24 C 0.022 3.978 25 H 0.071 0.929 26 H -0.003 1.003 27 H 0.001 0.999 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.187 0.813 35 H 0.195 0.805 36 H 0.136 0.864 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.154 -22.437 -3.316 27.845 hybrid contribution -0.567 0.480 -0.461 0.875 sum 15.587 -21.957 -3.777 27.190 Atomic orbital electron populations 1.70181 1.08383 1.27812 1.51556 1.26144 0.95678 1.03977 0.94713 0.85388 0.78047 0.77351 0.79557 1.18668 1.21669 1.18466 1.21693 0.94101 0.91446 1.50655 0.90253 1.18686 0.93720 0.92541 0.94574 1.21670 0.99349 0.89759 1.04820 1.21372 0.87628 0.86350 0.73932 1.90655 1.16621 1.87804 1.51423 1.48184 1.07708 1.05370 1.73818 1.21747 0.98594 0.83315 0.97535 1.20922 0.91076 1.02702 0.98360 1.19354 0.96464 0.94297 0.96048 1.20904 0.90227 0.96039 1.00303 1.98375 1.65399 1.57469 1.81341 1.20900 0.92007 0.96216 0.97752 1.98389 1.86661 1.57306 1.60117 1.21302 1.01035 0.93156 0.96126 1.21480 0.93957 0.98495 0.96242 1.20040 0.94160 0.96100 0.98076 1.20883 0.78216 0.99519 0.99190 0.92943 1.00302 0.99942 0.87152 0.87819 0.88272 0.90308 0.91175 0.87805 0.81333 0.80520 0.86354 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.25 13.29 21.45 0.28 -58.96 16 2 C -0.01 -0.45 5.46 84.65 0.46 0.02 16 3 Si 0.97 43.41 29.54 68.60 2.03 45.43 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.54 -29.98 9.11 25.60 0.23 -29.75 16 8 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 9 C 0.04 2.31 4.26 29.85 0.13 2.44 16 10 C -0.12 -4.44 4.06 29.85 0.12 -4.32 16 11 C 0.52 19.44 7.72 87.66 0.68 20.11 16 12 O -0.59 -28.35 15.47 -3.03 -0.05 -28.39 16 13 N -0.62 -16.26 2.93 -822.96 -2.41 -18.67 16 14 C 0.11 2.56 6.47 86.35 0.56 3.12 16 15 C -0.09 -1.96 5.27 29.92 0.16 -1.80 16 16 C -0.06 -1.19 5.76 -19.83 -0.11 -1.30 16 17 C -0.05 -0.92 6.31 22.44 0.14 -0.78 16 18 Cl -0.05 -1.09 26.17 -2.72 -0.07 -1.16 16 19 C -0.04 -0.71 6.32 22.27 0.14 -0.57 16 20 Cl -0.05 -0.90 27.94 -2.72 -0.08 -0.98 16 21 C -0.10 -1.21 9.84 22.23 0.22 -0.99 16 22 C -0.08 -0.95 9.62 22.35 0.21 -0.73 16 23 C -0.08 -1.35 5.82 -19.81 -0.12 -1.46 16 24 C 0.14 2.42 6.08 85.65 0.52 2.94 16 25 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 26 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 27 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 28 H 0.11 3.54 8.11 -2.39 -0.02 3.52 16 29 H 0.10 3.45 7.58 -2.39 -0.02 3.43 16 30 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.08 2.22 7.07 -2.39 -0.02 2.20 16 32 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.10 1.87 7.09 -2.39 -0.02 1.86 16 34 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.18 0.82 8.05 -2.91 -0.02 0.79 16 36 H 0.12 1.80 6.19 -2.39 -0.01 1.78 16 37 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -76.96 337.59 4.15 -72.81 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.10 Total: 3.00 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 3.34 Total: -13.07 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -2.12 Total: -77.63 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.05 Total: -28.39 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.15 Total: -2.14 kcal Total: -76.96 4.15 -72.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335862414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.535 kcal (2) G-P(sol) polarization free energy of solvation -76.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds