Wall clock time and date at job start Tue Mar 31 2020 15:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99452 * 2 1 4 4 H 1.48505 * 109.46711 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47060 * 299.99611 * 3 2 1 6 6 H 1.48493 * 109.47171 * 60.00024 * 3 2 1 7 7 C 1.37875 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99643 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00276 * 0.02562 * 7 2 1 10 10 C 1.53351 * 109.40437 * 300.11765 * 9 7 2 11 11 C 1.53190 * 109.14732 * 178.68494 * 10 9 7 12 12 N 1.46928 * 108.89669 * 54.57830 * 11 10 9 13 13 C 1.34771 * 120.63361 * 126.29748 * 12 11 10 14 14 O 1.21561 * 120.00106 * 354.98639 * 13 12 11 15 15 C 1.47771 * 120.00092 * 174.98073 * 13 12 11 16 16 C 1.39637 * 120.14886 * 312.11283 * 15 13 12 17 17 C 1.37900 * 119.88811 * 179.71738 * 16 15 13 18 18 C 1.38409 * 120.19497 * 0.55528 * 17 16 15 19 19 C 1.38369 * 120.30635 * 359.72505 * 18 17 16 20 20 Cl 1.73602 * 119.95188 * 180.02562 * 19 18 17 21 21 C 1.38276 * 120.10421 * 359.97438 * 19 18 17 22 22 Cl 1.73602 * 120.10027 * 179.97438 * 21 19 18 23 23 C 1.46923 * 118.73565 * 306.31949 * 12 11 10 24 24 C 1.53040 * 109.45670 * 179.97438 * 9 7 2 25 25 H 0.96995 * 120.00221 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46069 * 60.02266 * 9 7 2 27 27 H 1.08997 * 109.68745 * 58.71796 * 10 9 7 28 28 H 1.08997 * 109.47464 * 298.51780 * 10 9 7 29 29 H 1.09005 * 109.58621 * 294.71662 * 11 10 9 30 30 H 1.09001 * 109.58970 * 174.43755 * 11 10 9 31 31 H 1.07999 * 120.05268 * 359.97438 * 16 15 13 32 32 H 1.07998 * 119.90286 * 180.29968 * 17 16 15 33 33 H 1.08005 * 119.84854 * 179.69385 * 18 17 16 34 34 H 1.08993 * 109.58713 * 173.39390 * 23 12 11 35 35 H 1.08999 * 109.59015 * 293.67892 * 23 12 11 36 36 H 1.09000 * 109.50134 * 61.41933 * 24 9 7 37 37 H 1.08997 * 109.50019 * 301.32171 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 0.3674 -2.5772 1.2513 11 6 -0.4203 -3.8909 1.2288 12 7 0.5224 -5.0085 1.0833 13 6 0.5120 -6.0340 1.9578 14 8 -0.2186 -5.9975 2.9286 15 6 1.3887 -7.2028 1.7363 16 6 1.4406 -7.8128 0.4813 17 6 2.2649 -8.8996 0.2791 18 6 3.0322 -9.3944 1.3193 19 6 2.9827 -8.7998 2.5678 20 17 3.9495 -9.4276 3.8658 21 6 2.1651 -7.7056 2.7829 22 17 2.1025 -6.9600 4.3494 23 6 1.4769 -4.9866 -0.0334 24 6 2.2460 -3.6621 0.0005 25 1 -0.4850 0.8400 -0.0004 26 1 0.6252 -2.5571 -0.8899 27 1 -0.3268 -1.7370 1.2635 28 1 0.9947 -2.5445 2.1421 29 1 -1.1143 -3.8865 0.3883 30 1 -0.9755 -4.0002 2.1605 31 1 0.8392 -7.4314 -0.3307 32 1 2.3089 -9.3685 -0.6928 33 1 3.6722 -10.2489 1.1560 34 1 2.1754 -5.8173 0.0666 35 1 0.9379 -5.0741 -0.9767 36 1 2.8560 -3.6191 0.9028 37 1 2.8884 -3.5914 -0.8772 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336592891.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:00 Heat of formation + Delta-G solvation = -40.521635 kcal Electronic energy + Delta-G solvation = -23245.437911 eV Core-core repulsion = 19652.456505 eV Total energy + Delta-G solvation = -3592.981406 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65279 -39.85033 -38.37803 -37.59054 -37.55364 -35.40220 -33.24574 -32.52491 -31.81162 -31.27768 -28.12924 -25.71202 -24.39624 -23.95344 -23.50689 -21.70258 -20.28278 -18.75683 -18.40585 -17.74523 -17.35547 -16.91864 -16.52143 -16.11990 -15.88220 -15.27449 -15.05523 -14.94585 -14.88443 -14.54884 -14.27777 -13.90695 -13.43195 -13.21433 -13.07833 -12.94521 -12.89458 -12.82802 -12.50432 -12.34398 -12.28723 -12.16869 -11.94379 -11.90034 -11.44244 -11.16117 -10.89513 -10.79795 -10.41075 -10.06178 -9.82037 -9.58318 -8.08062 -6.21160 -0.35498 -0.14635 0.71924 1.11348 1.39450 1.43014 1.52486 1.56813 1.95924 2.40711 2.44005 3.19036 3.24455 3.75917 3.79213 4.05451 4.10297 4.18773 4.23540 4.31567 4.41303 4.52512 4.58462 4.70744 4.82251 4.86970 4.97202 5.01181 5.13162 5.15874 5.22399 5.44075 5.48594 5.53387 5.66682 5.98265 6.10051 6.38787 6.40918 6.90037 7.03559 7.47013 8.95539 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.019896 B = 0.003309 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.990043 B = 8460.467774 C = 8558.983231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 0.947 3.053 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.286 1.286 7 C -0.532 4.532 8 H 0.051 0.949 9 C 0.046 3.954 10 C -0.112 4.112 11 C 0.121 3.879 12 N -0.592 5.592 13 C 0.550 3.450 14 O -0.567 6.567 15 C -0.124 4.124 16 C -0.070 4.070 17 C -0.086 4.086 18 C -0.070 4.070 19 C -0.048 4.048 20 Cl -0.048 7.048 21 C -0.015 4.015 22 Cl -0.056 7.056 23 C 0.106 3.894 24 C -0.118 4.118 25 H 0.260 0.740 26 H 0.011 0.989 27 H 0.074 0.926 28 H 0.015 0.985 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.164 0.836 32 H 0.193 0.807 33 H 0.180 0.820 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.037 0.963 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.324 -22.244 -1.983 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.212 1.212 7 C -0.570 4.570 8 H 0.069 0.931 9 C 0.028 3.972 10 C -0.150 4.150 11 C -0.001 4.001 12 N -0.324 5.324 13 C 0.339 3.661 14 O -0.447 6.447 15 C -0.128 4.128 16 C -0.089 4.089 17 C -0.104 4.104 18 C -0.088 4.088 19 C -0.076 4.076 20 Cl -0.019 7.019 21 C -0.043 4.043 22 Cl -0.026 7.026 23 C -0.015 4.015 24 C -0.156 4.156 25 H 0.069 0.931 26 H 0.029 0.971 27 H 0.092 0.908 28 H 0.034 0.966 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.182 0.818 32 H 0.210 0.790 33 H 0.198 0.802 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.056 0.944 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.875 -22.061 -1.224 22.863 hybrid contribution 0.211 1.700 0.875 1.923 sum 6.086 -20.361 -0.349 21.254 Atomic orbital electron populations 1.69970 1.06944 1.26981 1.51478 1.25665 0.95631 1.02094 0.94979 0.85668 0.79194 0.80314 0.77453 1.19303 1.20446 1.21241 1.21614 0.93021 0.92247 1.50113 0.93118 1.18667 0.93052 0.92421 0.93087 1.21826 0.99298 0.95596 0.98319 1.21609 0.91308 0.85580 1.01575 1.48161 1.35721 1.20082 1.28406 1.18518 0.82599 0.83014 0.82004 1.90766 1.43469 1.80761 1.29712 1.19726 0.99764 0.98193 0.95160 1.21798 0.97883 0.95249 0.93956 1.21681 0.93385 0.94369 1.00975 1.21704 0.98612 0.99798 0.88720 1.20878 0.97818 0.96185 0.92692 1.98395 1.69092 1.85686 1.48709 1.20957 0.99559 0.95968 0.87827 1.98415 1.97418 1.81556 1.25254 1.22187 0.91563 0.98897 0.88866 1.21882 0.98247 0.94396 1.01043 0.93071 0.97069 0.90771 0.96575 0.90864 0.91464 0.81810 0.79028 0.80225 0.87762 0.89043 0.94395 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.39 11.31 21.45 0.24 -51.15 16 2 C 0.02 0.81 5.30 84.65 0.45 1.26 16 3 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.53 -28.36 8.56 25.60 0.22 -28.14 16 8 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 9 C 0.05 2.17 2.07 -11.41 -0.02 2.15 16 10 C -0.11 -5.28 5.17 30.78 0.16 -5.12 16 11 C 0.12 4.81 6.43 86.36 0.56 5.36 16 12 N -0.59 -20.28 2.97 -822.40 -2.45 -22.73 16 13 C 0.55 19.07 6.78 86.77 0.59 19.66 16 14 O -0.57 -23.82 15.18 -3.91 -0.06 -23.88 16 15 C -0.12 -3.29 4.86 -20.07 -0.10 -3.38 16 16 C -0.07 -1.16 7.51 22.53 0.17 -0.99 16 17 C -0.09 -0.84 10.03 22.23 0.22 -0.62 16 18 C -0.07 -0.84 9.82 22.34 0.22 -0.62 16 19 C -0.05 -0.97 6.32 22.31 0.14 -0.83 16 20 Cl -0.05 -0.95 27.95 -2.72 -0.08 -1.02 16 21 C -0.01 -0.39 6.34 22.63 0.14 -0.25 16 22 Cl -0.06 -1.78 26.12 -2.72 -0.07 -1.85 16 23 C 0.11 3.00 5.22 86.37 0.45 3.45 16 24 C -0.12 -4.33 5.30 30.67 0.16 -4.17 16 25 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 26 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 3.96 6.05 -2.39 -0.01 3.94 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 30 H 0.07 2.79 6.99 -2.39 -0.02 2.78 16 31 H 0.16 2.09 7.26 -2.91 -0.02 2.07 16 32 H 0.19 0.19 8.06 -2.91 -0.02 0.17 16 33 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 34 H 0.10 2.32 5.07 -2.39 -0.01 2.31 16 35 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -68.63 330.49 4.08 -64.55 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 1.10 Total: 3.18 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 3.36 Total: -12.23 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -2.20 Total: -73.87 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.06 Total: -23.88 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 17 Polarization: -2.72 SS G_CDS: -0.15 Total: -2.87 kcal Total: -68.63 4.08 -64.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336592891.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.033 kcal (2) G-P(sol) polarization free energy of solvation -68.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds