Wall clock time and date at job start Tue Mar 31 2020 14:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31591 * 122.22989 * 2 1 4 4 C 1.29943 * 117.14102 * 179.97438 * 3 2 1 5 5 N 1.38891 * 125.36812 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00262 * 179.97438 * 5 4 3 7 7 O 1.21293 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00046 * 179.72573 * 6 5 4 9 9 H 1.08995 * 110.21868 * 42.20865 * 8 6 5 10 10 C 1.54481 * 110.24525 * 280.27476 * 8 6 5 11 11 C 1.54631 * 101.76711 * 215.58681 * 10 8 6 12 12 C 1.51280 * 104.19543 * 24.79591 * 11 10 8 13 13 O 1.21277 * 124.94386 * 163.74734 * 12 11 10 14 14 N 1.34423 * 110.11861 * 343.75258 * 12 11 10 15 15 S 1.76142 * 109.26868 * 0.26500 * 4 3 2 16 16 C 1.34655 * 122.23450 * 179.97438 * 2 1 3 17 17 S 1.76206 * 125.92776 * 0.02562 * 16 2 1 18 18 C 1.76202 * 99.99921 * 179.97438 * 17 16 2 19 19 H 1.08001 * 119.99716 * 359.97438 * 18 17 16 20 20 C 1.38428 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31816 * 119.99651 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00285 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46994 * 89.99698 * 22 20 18 24 24 H 1.48490 * 109.47095 * 209.99707 * 22 20 18 25 25 H 1.48499 * 109.47044 * 330.00272 * 22 20 18 26 26 H 1.09002 * 109.46556 * 90.02369 * 1 2 3 27 27 H 1.09001 * 109.46443 * 210.02182 * 1 2 3 28 28 H 1.08998 * 109.46853 * 330.02378 * 1 2 3 29 29 H 0.97000 * 120.00214 * 0.02562 * 5 4 3 30 30 H 1.08999 * 110.97124 * 333.70332 * 10 8 6 31 31 H 1.08998 * 110.96913 * 97.46299 * 10 8 6 32 32 H 1.08995 * 110.48923 * 143.48213 * 11 10 8 33 33 H 1.09003 * 110.48177 * 265.99245 * 11 10 8 34 34 H 0.97001 * 124.35248 * 179.56848 * 14 12 11 35 35 H 0.96997 * 119.99553 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 0.0005 5 7 4.4044 2.0547 0.0011 6 6 5.7297 1.8102 0.0021 7 8 6.1355 0.6671 0.0021 8 6 6.7075 2.9568 -0.0035 9 1 6.3756 3.7383 0.6800 10 6 6.8575 3.5245 -1.4323 11 6 8.3550 3.9088 -1.4634 12 6 8.9906 3.0086 -0.4270 13 8 10.1798 2.7907 -0.3316 14 7 8.0455 2.4852 0.3729 15 16 3.9346 -0.7098 -0.0066 16 6 2.2253 -1.1390 0.0005 17 16 1.5698 -2.7746 0.0006 18 6 3.0668 -3.7041 0.0006 19 1 4.0189 -3.1943 0.0001 20 6 3.0223 -5.0877 0.0012 21 7 4.1422 -5.7830 0.0017 22 14 1.3755 -5.9693 0.0013 23 1 0.9393 -6.2035 -1.3988 24 1 1.5112 -7.2715 0.7018 25 1 0.3667 -5.1336 0.7007 26 1 -0.3632 -0.0004 -1.0277 27 1 -0.3632 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 4.0799 2.9688 0.0015 30 1 6.6346 2.7633 -2.1799 31 1 6.2265 4.4023 -1.5716 32 1 8.7784 3.7144 -2.4488 33 1 8.4856 4.9566 -1.1931 34 1 8.2247 1.8741 1.1046 35 1 4.1110 -6.7525 0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337549329.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:15 Heat of formation + Delta-G solvation = -29.028998 kcal Electronic energy + Delta-G solvation = -22190.150446 eV Core-core repulsion = 18634.047562 eV Total energy + Delta-G solvation = -3556.102884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23215 -39.66165 -38.67310 -36.52012 -35.00644 -32.80795 -31.73028 -30.87373 -28.81428 -27.21506 -25.95625 -24.26604 -22.68780 -21.30512 -20.87396 -19.99884 -18.45539 -18.03864 -17.43280 -17.20147 -16.11436 -15.94131 -15.57457 -15.41378 -15.21861 -14.50191 -14.20883 -14.03344 -13.97317 -13.60859 -13.27509 -13.15049 -12.83579 -12.56990 -12.20633 -12.06739 -11.63654 -11.61762 -11.40275 -11.35220 -10.95848 -10.75237 -10.24115 -10.19621 -10.14614 -9.54310 -9.51873 -9.24728 -8.93887 -8.85119 -7.98453 -6.80927 -6.60549 -4.34697 1.17673 1.68739 2.15596 2.18736 2.37246 2.55236 2.76153 3.06538 3.08698 3.15684 3.31831 3.41879 3.85048 3.88788 3.98342 4.19365 4.41696 4.41942 4.54166 4.79501 4.88004 5.02095 5.18856 5.30275 5.43503 5.78936 5.93616 6.06391 6.24863 6.29221 6.36015 6.66907 6.75878 6.95420 7.62095 7.70898 7.91529 8.18204 8.32449 8.78748 10.47227 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.003347 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.967113 B = 8363.574990 C = 9766.110900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.030 3.970 3 N -0.476 5.476 4 C 0.186 3.814 5 N -0.609 5.609 6 C 0.494 3.506 7 O -0.488 6.488 8 C 0.126 3.874 9 H 0.114 0.886 10 C -0.124 4.124 11 C -0.154 4.154 12 C 0.524 3.476 13 O -0.527 6.527 14 N -0.709 5.709 15 S 0.232 5.768 16 C -0.237 4.237 17 S 0.060 5.940 18 C -0.547 4.547 19 H 0.105 0.895 20 C 0.102 3.898 21 N -0.855 5.855 22 Si 0.852 3.148 23 H -0.260 1.260 24 H -0.265 1.265 25 H -0.236 1.236 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.416 0.584 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.419 0.581 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.346 19.815 -1.242 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 N -0.198 5.198 4 C -0.185 4.185 5 N -0.259 5.259 6 C 0.277 3.723 7 O -0.361 6.361 8 C 0.016 3.984 9 H 0.131 0.869 10 C -0.163 4.163 11 C -0.194 4.194 12 C 0.310 3.690 13 O -0.403 6.403 14 N -0.366 5.366 15 S 0.477 5.523 16 C -0.473 4.473 17 S 0.308 5.692 18 C -0.695 4.695 19 H 0.122 0.878 20 C -0.110 4.110 21 N -0.488 5.488 22 Si 0.676 3.324 23 H -0.185 1.185 24 H -0.189 1.189 25 H -0.160 1.160 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.254 0.746 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.259 0.741 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.324 18.155 -1.291 18.204 hybrid contribution -0.336 0.048 0.366 0.499 sum -0.012 18.203 -0.925 18.227 Atomic orbital electron populations 1.20152 0.87920 1.02263 1.01963 1.19104 0.96806 0.84543 1.10805 1.65844 1.02828 1.32220 1.18889 1.23922 0.90025 0.93326 1.11183 1.42297 1.04145 1.08274 1.71155 1.20962 0.82167 0.91535 0.77656 1.90789 1.76851 1.22009 1.46421 1.21442 0.83313 0.94011 0.99661 0.86892 1.22689 0.97001 1.02752 0.93827 1.22376 0.95114 1.01131 1.00793 1.20807 0.85758 0.80268 0.82142 1.90787 1.14780 1.62617 1.72124 1.45968 1.05682 1.49576 1.35378 1.86219 1.00672 0.94302 1.71115 1.28195 1.01625 1.04598 1.12879 1.82484 1.13425 0.89072 1.84241 1.22669 0.92373 0.94539 1.59964 0.87765 1.24750 0.97423 0.96231 0.92551 1.70011 1.26500 1.07756 1.44549 0.86811 0.83768 0.81422 0.80422 1.18499 1.18917 1.15983 0.91660 0.91077 0.91666 0.74605 0.88909 0.87648 0.87326 0.87138 0.74070 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 10.02 36.01 0.36 -0.63 16 2 C 0.03 0.57 6.73 -83.96 -0.57 0.01 16 3 N -0.48 -8.60 10.55 -9.78 -0.10 -8.71 16 4 C 0.19 3.20 8.40 -87.20 -0.73 2.46 16 5 N -0.61 -7.20 5.40 -11.78 -0.06 -7.27 16 6 C 0.49 5.81 6.99 -10.99 -0.08 5.73 16 7 O -0.49 -8.19 14.06 5.55 0.08 -8.11 16 8 C 0.13 0.89 3.93 -68.16 -0.27 0.62 16 9 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 10 C -0.12 -0.63 6.67 -25.10 -0.17 -0.80 16 11 C -0.15 -0.92 6.86 -26.74 -0.18 -1.10 16 12 C 0.52 5.63 8.43 -10.86 -0.09 5.54 16 13 O -0.53 -8.07 18.03 5.56 0.10 -7.97 16 14 N -0.71 -6.85 5.46 -53.88 -0.29 -7.14 16 15 S 0.23 4.89 18.35 -107.50 -1.97 2.92 16 16 C -0.24 -5.14 6.67 29.46 0.20 -4.94 16 17 S 0.06 1.39 18.70 -107.50 -2.01 -0.62 16 18 C -0.55 -14.96 9.80 30.80 0.30 -14.66 16 19 H 0.10 3.06 6.21 -52.49 -0.33 2.74 16 20 C 0.10 2.79 5.49 -17.49 -0.10 2.69 16 21 N -0.85 -24.45 13.98 55.47 0.78 -23.67 16 22 Si 0.85 19.34 27.73 -169.99 -4.71 14.63 16 23 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.24 -5.09 6.73 56.52 0.38 -4.71 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 1.11 7.37 -51.93 -0.38 0.72 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.42 3.22 8.82 -40.82 -0.36 2.86 16 30 H 0.09 0.61 7.90 -51.93 -0.41 0.20 16 31 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.42 4.31 8.94 -40.82 -0.36 3.94 16 35 H 0.28 7.28 8.32 -40.82 -0.34 6.94 16 LS Contribution 329.62 15.07 4.97 4.97 Total: -1.00 -35.20 329.62 -8.10 -43.30 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.54 Total: 2.75 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.32 Total: -5.08 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.31 Total: -46.79 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.18 Total: -16.08 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.63 kcal Atomic # 16 Polarization: 6.28 SS G_CDS: -3.98 Total: 2.30 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.20 -8.10 -43.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337549329.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.271 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds