Wall clock time and date at job start Tue Mar 31 2020 14:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31591 * 122.22989 * 2 1 4 4 C 1.29943 * 117.14102 * 179.97438 * 3 2 1 5 5 N 1.38891 * 125.36812 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00262 * 179.97438 * 5 4 3 7 7 O 1.21293 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00046 * 179.72573 * 6 5 4 9 9 H 1.08995 * 110.21868 * 42.20865 * 8 6 5 10 10 C 1.54481 * 110.24525 * 280.27476 * 8 6 5 11 11 C 1.54631 * 101.76711 * 215.58681 * 10 8 6 12 12 C 1.51280 * 104.19543 * 24.79591 * 11 10 8 13 13 O 1.21277 * 124.94386 * 163.74734 * 12 11 10 14 14 N 1.34423 * 110.11861 * 343.75258 * 12 11 10 15 15 S 1.76142 * 109.26868 * 0.26500 * 4 3 2 16 16 C 1.34655 * 122.23450 * 179.97438 * 2 1 3 17 17 S 1.76206 * 125.92776 * 0.02562 * 16 2 1 18 18 C 1.76202 * 99.99921 * 179.97438 * 17 16 2 19 19 H 1.08001 * 119.99716 * 359.97438 * 18 17 16 20 20 C 1.38428 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31816 * 119.99651 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00285 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46994 * 89.99698 * 22 20 18 24 24 H 1.48490 * 109.47095 * 209.99707 * 22 20 18 25 25 H 1.48499 * 109.47044 * 330.00272 * 22 20 18 26 26 H 1.09002 * 109.46556 * 90.02369 * 1 2 3 27 27 H 1.09001 * 109.46443 * 210.02182 * 1 2 3 28 28 H 1.08998 * 109.46853 * 330.02378 * 1 2 3 29 29 H 0.97000 * 120.00214 * 0.02562 * 5 4 3 30 30 H 1.08999 * 110.97124 * 333.70332 * 10 8 6 31 31 H 1.08998 * 110.96913 * 97.46299 * 10 8 6 32 32 H 1.08995 * 110.48923 * 143.48213 * 11 10 8 33 33 H 1.09003 * 110.48177 * 265.99245 * 11 10 8 34 34 H 0.97001 * 124.35248 * 179.56848 * 14 12 11 35 35 H 0.96997 * 119.99553 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 0.0005 5 7 4.4044 2.0547 0.0011 6 6 5.7297 1.8102 0.0021 7 8 6.1355 0.6671 0.0021 8 6 6.7075 2.9568 -0.0035 9 1 6.3756 3.7383 0.6800 10 6 6.8575 3.5245 -1.4323 11 6 8.3550 3.9088 -1.4634 12 6 8.9906 3.0086 -0.4270 13 8 10.1798 2.7907 -0.3316 14 7 8.0455 2.4852 0.3729 15 16 3.9346 -0.7098 -0.0066 16 6 2.2253 -1.1390 0.0005 17 16 1.5698 -2.7746 0.0006 18 6 3.0668 -3.7041 0.0006 19 1 4.0189 -3.1943 0.0001 20 6 3.0223 -5.0877 0.0012 21 7 4.1422 -5.7830 0.0017 22 14 1.3755 -5.9693 0.0013 23 1 0.9393 -6.2035 -1.3988 24 1 1.5112 -7.2715 0.7018 25 1 0.3667 -5.1336 0.7007 26 1 -0.3632 -0.0004 -1.0277 27 1 -0.3632 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 4.0799 2.9688 0.0015 30 1 6.6346 2.7633 -2.1799 31 1 6.2265 4.4023 -1.5716 32 1 8.7784 3.7144 -2.4488 33 1 8.4856 4.9566 -1.1931 34 1 8.2247 1.8741 1.1046 35 1 4.1110 -6.7525 0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337549329.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:14 Heat of formation + Delta-G solvation = -57.562151 kcal Electronic energy + Delta-G solvation = -22191.387736 eV Core-core repulsion = 18634.047562 eV Total energy + Delta-G solvation = -3557.340174 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.14243 -40.78097 -40.05535 -37.40846 -36.25812 -34.83912 -32.41840 -32.12891 -29.66044 -28.76586 -27.91661 -25.39528 -23.53875 -22.47538 -21.64228 -21.32357 -19.97986 -19.29987 -18.58252 -18.28032 -17.46123 -17.23499 -17.03786 -16.70912 -16.39157 -15.76690 -15.57888 -15.15740 -15.00123 -14.77213 -14.49582 -14.19287 -13.70784 -13.55928 -13.48093 -13.40645 -13.19139 -13.09005 -13.06347 -12.35772 -12.17152 -12.08415 -11.94914 -11.50697 -11.30891 -11.06642 -10.94485 -10.61148 -10.57013 -10.31416 -9.63082 -8.63298 -8.54933 -6.36527 -0.30648 0.14974 0.74654 1.04627 1.06173 1.26257 1.28063 1.38530 1.56369 1.64716 1.95417 2.12669 2.30664 2.49396 2.75773 3.12307 3.25227 3.54906 3.75333 3.96810 4.03575 4.37152 4.46406 4.64979 4.82944 4.86504 4.93941 4.96456 5.02601 5.04102 5.44245 5.58455 5.59073 5.86352 5.92456 6.05842 6.67656 6.75139 6.81757 7.08693 8.49332 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.003347 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.967113 B = 8363.574990 C = 9766.110900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.054 3.946 3 N -0.478 5.478 4 C 0.235 3.765 5 N -0.590 5.590 6 C 0.495 3.505 7 O -0.538 6.538 8 C 0.134 3.866 9 H 0.169 0.831 10 C -0.116 4.116 11 C -0.142 4.142 12 C 0.510 3.490 13 O -0.586 6.586 14 N -0.717 5.717 15 S 0.155 5.845 16 C -0.276 4.276 17 S 0.061 5.939 18 C -0.568 4.568 19 H 0.067 0.933 20 C 0.048 3.952 21 N -0.909 5.909 22 Si 0.915 3.085 23 H -0.252 1.252 24 H -0.255 1.255 25 H -0.218 1.218 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.443 0.557 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.111 0.889 33 H 0.146 0.854 34 H 0.410 0.590 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.842 23.996 -1.585 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.087 4.087 3 N -0.200 5.200 4 C -0.138 4.138 5 N -0.244 5.244 6 C 0.281 3.719 7 O -0.412 6.412 8 C 0.026 3.974 9 H 0.186 0.814 10 C -0.154 4.154 11 C -0.181 4.181 12 C 0.299 3.701 13 O -0.466 6.466 14 N -0.371 5.371 15 S 0.401 5.599 16 C -0.511 4.511 17 S 0.306 5.694 18 C -0.716 4.716 19 H 0.085 0.915 20 C -0.159 4.159 21 N -0.544 5.544 22 Si 0.734 3.266 23 H -0.176 1.176 24 H -0.179 1.179 25 H -0.141 1.141 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.286 0.714 30 H 0.094 0.906 31 H 0.175 0.825 32 H 0.130 0.870 33 H 0.164 0.836 34 H 0.249 0.751 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.201 22.432 -1.638 22.599 hybrid contribution 0.605 -0.852 0.480 1.150 sum -1.596 21.580 -1.157 21.670 Atomic orbital electron populations 1.20330 0.85108 1.03559 1.03528 1.19839 0.98656 0.83912 1.06337 1.66090 1.02435 1.30967 1.20558 1.24214 0.90378 0.93007 1.06202 1.42419 1.03482 1.08173 1.70283 1.22097 0.82341 0.92182 0.75270 1.90807 1.77482 1.24799 1.48141 1.21884 0.80460 0.92416 1.02686 0.81433 1.22861 0.97106 1.04050 0.91368 1.22438 0.94929 1.01717 0.99066 1.21755 0.85174 0.80428 0.82728 1.90750 1.17346 1.64836 1.73692 1.46229 1.06924 1.49074 1.34842 1.86650 1.02248 0.98352 1.72690 1.28093 1.01481 1.04488 1.17032 1.81905 1.10679 0.89587 1.87255 1.22855 0.93307 0.95460 1.59973 0.91533 1.25744 1.01367 0.96903 0.91881 1.70126 1.29158 1.08262 1.46892 0.85888 0.79220 0.80468 0.81067 1.17619 1.17913 1.14101 0.89801 0.91014 0.89112 0.71357 0.90643 0.82466 0.87021 0.83599 0.75106 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.86 10.02 71.24 0.71 -1.14 16 2 C 0.05 1.97 6.73 41.77 0.28 2.25 16 3 N -0.48 -15.89 10.55 -184.87 -1.95 -17.84 16 4 C 0.23 7.62 8.40 179.15 1.50 9.12 16 5 N -0.59 -11.88 5.40 -309.57 -1.67 -13.55 16 6 C 0.50 10.51 6.99 87.66 0.61 11.12 16 7 O -0.54 -18.19 14.06 -3.07 -0.04 -18.23 16 8 C 0.13 1.37 3.93 44.70 0.18 1.55 16 9 H 0.17 0.08 8.14 -2.39 -0.02 0.06 16 10 C -0.12 -0.61 6.67 31.65 0.21 -0.40 16 11 C -0.14 -1.18 6.86 30.59 0.21 -0.97 16 12 C 0.51 10.44 8.43 87.90 0.74 11.18 16 13 O -0.59 -18.41 18.03 -3.02 -0.05 -18.47 16 14 N -0.72 -12.88 5.46 -442.96 -2.42 -15.30 16 15 S 0.15 6.75 18.35 -56.49 -1.04 5.72 16 16 C -0.28 -12.08 6.67 67.00 0.45 -11.63 16 17 S 0.06 2.86 18.70 -56.49 -1.06 1.80 16 18 C -0.57 -32.78 9.80 67.87 0.67 -32.11 16 19 H 0.07 4.24 6.21 -2.91 -0.02 4.22 16 20 C 0.05 2.72 5.49 84.74 0.47 3.18 16 21 N -0.91 -54.90 13.98 21.59 0.30 -54.60 16 22 Si 0.91 40.63 27.73 68.60 1.90 42.53 16 23 H -0.25 -10.76 7.11 99.48 0.71 -10.05 16 24 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 25 H -0.22 -8.95 6.73 99.48 0.67 -8.28 16 26 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.07 2.05 7.37 -2.39 -0.02 2.03 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.44 4.37 8.82 -92.71 -0.82 3.56 16 30 H 0.07 0.73 7.90 -2.39 -0.02 0.71 16 31 H 0.16 -0.67 8.14 -2.39 -0.02 -0.69 16 32 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.41 8.53 8.94 -92.71 -0.83 7.70 16 35 H 0.28 15.54 8.32 -92.71 -0.77 14.77 16 Total: -1.00 -85.97 329.62 -0.50 -86.47 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -0.51 Total: 9.31 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 6.03 Total: -7.85 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -5.74 Total: -101.29 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -0.10 Total: -36.70 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 1.90 Total: 42.53 kcal Atomic # 16 Polarization: 9.61 SS G_CDS: -2.09 Total: 7.52 kcal Total: -85.97 -0.50 -86.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337549329.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.912 kcal (2) G-P(sol) polarization free energy of solvation -85.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds