Wall clock time and date at job start Tue Mar 31 2020 14:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38348 * 127.14927 * 2 1 4 4 C 1.39784 * 126.56527 * 0.02562 * 3 2 1 5 5 H 1.07990 * 119.99937 * 5.89891 * 4 3 2 6 6 C 1.40079 * 119.99787 * 185.90051 * 4 3 2 7 7 N 1.30818 * 120.00007 * 6.44701 * 6 4 3 8 8 Si 1.86802 * 120.00049 * 186.44417 * 6 4 3 9 9 H 1.48499 * 109.47321 * 265.01629 * 8 6 4 10 10 H 1.48499 * 109.46774 * 25.01756 * 8 6 4 11 11 H 1.48500 * 109.47127 * 145.01048 * 8 6 4 12 12 N 1.33102 * 106.86994 * 179.73980 * 3 2 1 13 13 N 1.28507 * 109.74317 * 0.25969 * 12 3 2 14 14 C 1.32391 * 110.20751 * 359.97438 * 13 12 3 15 15 S 1.76202 * 126.25911 * 179.97438 * 14 13 12 16 16 C 1.81003 * 100.00137 * 0.03049 * 15 14 13 17 17 C 1.50696 * 109.47052 * 179.97438 * 16 15 14 18 18 C 1.38253 * 119.99371 * 269.72447 * 17 16 15 19 19 C 1.38223 * 120.06009 * 179.72827 * 18 17 16 20 20 C 1.38241 * 120.05166 * 0.54423 * 19 18 17 21 21 C 1.38401 * 119.98210 * 359.73232 * 20 19 18 22 22 F 1.35102 * 120.03225 * 179.97438 * 21 20 19 23 23 C 1.38282 * 119.99345 * 89.99877 * 17 16 15 24 24 Cl 1.73603 * 120.02294 * 359.97438 * 23 17 16 25 25 H 1.09000 * 109.47327 * 90.00299 * 1 2 3 26 26 H 1.09003 * 109.47363 * 209.99793 * 1 2 3 27 27 H 1.08999 * 109.47241 * 330.00256 * 1 2 3 28 28 H 0.97004 * 120.00095 * 179.97438 * 7 6 4 29 29 H 1.09008 * 109.46607 * 299.99938 * 16 15 14 30 30 H 1.09001 * 109.47152 * 59.99419 * 16 15 14 31 31 H 1.08004 * 119.96997 * 0.02562 * 18 17 16 32 32 H 1.08005 * 119.97233 * 180.27777 * 19 18 17 33 33 H 1.07993 * 120.00999 * 179.74847 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1027 0.0000 4 6 1.9085 2.4445 0.0005 5 1 0.8642 2.7019 0.0971 6 6 2.8704 3.4552 -0.1243 7 7 4.1177 3.1446 -0.3674 8 14 2.3720 5.2464 0.0565 9 1 2.1051 5.8238 -1.2854 10 1 1.1446 5.3371 0.8875 11 1 3.4699 6.0020 0.7111 12 7 3.5490 0.6414 0.0058 13 7 3.5370 -0.6436 0.0038 14 6 2.2904 -1.0893 -0.0028 15 16 1.7874 -2.7780 -0.0084 16 6 3.4060 -3.5881 -0.0016 17 6 3.2192 -5.0835 -0.0045 18 6 3.1334 -5.7716 1.1915 19 6 2.9565 -7.1425 1.1903 20 6 2.8764 -7.8292 -0.0068 21 6 2.9677 -7.1430 -1.2052 22 9 2.8901 -7.8131 -2.3757 23 6 3.1394 -5.7677 -1.2035 24 17 3.2536 -4.9047 -2.7055 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 4.7837 3.8445 -0.4542 29 1 3.9653 -3.2896 -0.8883 30 1 3.9563 -3.2927 0.8917 31 1 3.1999 -5.2370 2.1275 32 1 2.8852 -7.6781 2.1255 33 1 2.7422 -8.9007 -0.0069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338567977.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:14 Heat of formation + Delta-G solvation = 39.357530 kcal Electronic energy + Delta-G solvation = -21715.272525 eV Core-core repulsion = 18036.631092 eV Total energy + Delta-G solvation = -3678.641433 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 327.030 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.14375 -40.53060 -39.49208 -36.59006 -33.72328 -33.40164 -32.93534 -30.66632 -29.37686 -27.44862 -26.46386 -25.48952 -23.03599 -22.17170 -20.85607 -20.43648 -17.75991 -17.35683 -16.93634 -16.63777 -16.18440 -15.94099 -15.46149 -14.77426 -14.74633 -14.57982 -14.12266 -13.99613 -13.54436 -13.24016 -12.75626 -12.70365 -12.35165 -12.24796 -12.14899 -11.71470 -11.66882 -11.41451 -11.31158 -10.95800 -10.86653 -10.50471 -10.37582 -9.75747 -9.60939 -9.01964 -8.90922 -8.73113 -8.47821 -8.39204 -6.87377 -6.68507 -4.59004 0.61839 0.75266 1.92947 2.07687 2.71768 2.89917 3.05441 3.09428 3.28252 3.33768 3.79076 3.85879 4.21531 4.29864 4.39490 4.51630 4.74804 4.87885 5.19611 5.27612 5.30082 5.52717 5.58764 5.65060 5.87290 5.90421 5.96371 6.02863 6.07755 6.42334 6.74087 6.87378 7.21930 7.46272 7.86175 8.16099 8.68158 8.83476 10.25067 10.60569 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.028269 B = 0.002853 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.243149 B = 9812.655234 C =10030.438238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.515 5.515 3 C 0.349 3.651 4 C -0.449 4.449 5 H 0.084 0.916 6 C 0.080 3.920 7 N -0.737 5.737 8 Si 0.920 3.080 9 H -0.270 1.270 10 H -0.262 1.262 11 H -0.274 1.274 12 N -0.335 5.335 13 N -0.284 5.284 14 C 0.043 3.957 15 S -0.035 6.035 16 C -0.064 4.064 17 C -0.032 4.032 18 C -0.101 4.101 19 C -0.087 4.087 20 C -0.144 4.144 21 C 0.107 3.893 22 F -0.128 7.128 23 C -0.063 4.063 24 Cl -0.034 7.034 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.280 0.720 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.539 -17.164 2.004 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.217 5.217 3 C 0.105 3.895 4 C -0.489 4.489 5 H 0.102 0.898 6 C -0.146 4.146 7 N -0.361 5.361 8 Si 0.744 3.256 9 H -0.195 1.195 10 H -0.186 1.186 11 H -0.199 1.199 12 N -0.182 5.182 13 N -0.130 5.130 14 C -0.328 4.328 15 S 0.194 5.806 16 C -0.212 4.212 17 C -0.034 4.034 18 C -0.121 4.121 19 C -0.105 4.105 20 C -0.164 4.164 21 C 0.087 3.913 22 F -0.106 7.106 23 C -0.092 4.092 24 Cl -0.004 7.004 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.859 -17.496 1.778 18.005 hybrid contribution -0.493 1.474 -0.362 1.596 sum -4.352 -16.022 1.416 16.663 Atomic orbital electron populations 1.21495 0.78511 1.02620 1.01714 1.46037 1.06089 1.05291 1.64294 1.21612 0.84722 0.88394 0.94785 1.18100 0.95302 0.86479 1.49011 0.89759 1.25787 0.94307 1.01309 0.93156 1.69990 1.01696 1.35113 1.29330 0.86117 0.79391 0.80891 0.79220 1.19474 1.18561 1.19887 1.75418 1.15371 0.97913 1.29538 1.74518 1.15118 1.07591 1.15773 1.25293 0.91599 0.92560 1.23387 1.84557 1.08647 0.91629 1.95731 1.22306 0.99185 0.90848 1.08845 1.19204 0.98352 0.94647 0.91232 1.21192 0.99064 0.94234 0.97624 1.21092 0.97577 0.93985 0.97817 1.21140 1.03516 1.01135 0.90579 1.17354 1.03527 0.88166 0.82268 1.91539 1.93570 1.79902 1.45616 1.20948 1.07801 0.91030 0.89460 1.98419 1.96154 1.76021 1.29842 0.92481 0.91600 0.90344 0.90923 0.87220 0.87337 0.83842 0.84111 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.85 10.89 59.85 0.65 2.50 16 2 N -0.51 -12.41 3.26 -123.17 -0.40 -12.81 16 3 C 0.35 9.73 7.50 -154.81 -1.16 8.57 16 4 C -0.45 -11.85 9.05 -38.31 -0.35 -12.19 16 5 H 0.08 2.01 7.26 -52.49 -0.38 1.63 16 6 C 0.08 2.04 5.49 -17.29 -0.09 1.94 16 7 N -0.74 -20.21 12.00 55.56 0.67 -19.54 16 8 Si 0.92 18.44 29.57 -169.99 -5.03 13.41 16 9 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 10 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 11 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 12 N -0.33 -10.03 10.56 31.26 0.33 -9.70 16 13 N -0.28 -7.72 11.62 30.89 0.36 -7.36 16 14 C 0.04 1.03 8.09 -87.28 -0.71 0.32 16 15 S -0.04 -0.63 21.77 -107.50 -2.34 -2.97 16 16 C -0.06 -1.01 4.95 36.00 0.18 -0.83 16 17 C -0.03 -0.41 5.14 -104.60 -0.54 -0.94 16 18 C -0.10 -1.01 9.70 -39.58 -0.38 -1.39 16 19 C -0.09 -0.68 10.04 -39.59 -0.40 -1.08 16 20 C -0.14 -1.25 10.03 -39.52 -0.40 -1.65 16 21 C 0.11 1.23 7.28 -39.39 -0.29 0.95 16 22 F -0.13 -1.56 16.84 2.25 0.04 -1.52 16 23 C -0.06 -0.82 6.32 -39.44 -0.25 -1.07 16 24 Cl -0.03 -0.49 26.96 -51.86 -1.40 -1.89 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 1.05 7.85 -51.93 -0.41 0.64 16 27 H 0.08 1.33 7.48 -51.93 -0.39 0.95 16 28 H 0.28 6.90 8.30 -40.82 -0.34 6.57 16 29 H 0.11 1.92 6.90 -51.91 -0.36 1.56 16 30 H 0.11 1.71 8.08 -51.92 -0.42 1.29 16 31 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 32 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 326.56 15.07 4.92 4.92 Total: -1.00 -32.86 326.56 -9.36 -42.22 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -2.78 Total: 0.10 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -3.73 Total: -4.88 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.95 Total: -49.41 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Atomic # 16 Polarization: -0.63 SS G_CDS: -2.34 Total: -2.97 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.40 Total: -1.89 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.86 -9.36 -42.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338567977.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.577 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds