Wall clock time and date at job start Tue Mar 31 2020 14:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38348 * 127.14927 * 2 1 4 4 C 1.39784 * 126.56527 * 0.02562 * 3 2 1 5 5 H 1.07990 * 119.99937 * 5.89891 * 4 3 2 6 6 C 1.40079 * 119.99787 * 185.90051 * 4 3 2 7 7 N 1.30818 * 120.00007 * 6.44701 * 6 4 3 8 8 Si 1.86802 * 120.00049 * 186.44417 * 6 4 3 9 9 H 1.48499 * 109.47321 * 265.01629 * 8 6 4 10 10 H 1.48499 * 109.46774 * 25.01756 * 8 6 4 11 11 H 1.48500 * 109.47127 * 145.01048 * 8 6 4 12 12 N 1.33102 * 106.86994 * 179.73980 * 3 2 1 13 13 N 1.28507 * 109.74317 * 0.25969 * 12 3 2 14 14 C 1.32391 * 110.20751 * 359.97438 * 13 12 3 15 15 S 1.76202 * 126.25911 * 179.97438 * 14 13 12 16 16 C 1.81003 * 100.00137 * 0.03049 * 15 14 13 17 17 C 1.50696 * 109.47052 * 179.97438 * 16 15 14 18 18 C 1.38253 * 119.99371 * 269.72447 * 17 16 15 19 19 C 1.38223 * 120.06009 * 179.72827 * 18 17 16 20 20 C 1.38241 * 120.05166 * 0.54423 * 19 18 17 21 21 C 1.38401 * 119.98210 * 359.73232 * 20 19 18 22 22 F 1.35102 * 120.03225 * 179.97438 * 21 20 19 23 23 C 1.38282 * 119.99345 * 89.99877 * 17 16 15 24 24 Cl 1.73603 * 120.02294 * 359.97438 * 23 17 16 25 25 H 1.09000 * 109.47327 * 90.00299 * 1 2 3 26 26 H 1.09003 * 109.47363 * 209.99793 * 1 2 3 27 27 H 1.08999 * 109.47241 * 330.00256 * 1 2 3 28 28 H 0.97004 * 120.00095 * 179.97438 * 7 6 4 29 29 H 1.09008 * 109.46607 * 299.99938 * 16 15 14 30 30 H 1.09001 * 109.47152 * 59.99419 * 16 15 14 31 31 H 1.08004 * 119.96997 * 0.02562 * 18 17 16 32 32 H 1.08005 * 119.97233 * 180.27777 * 19 18 17 33 33 H 1.07993 * 120.00999 * 179.74847 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1027 0.0000 4 6 1.9085 2.4445 0.0005 5 1 0.8642 2.7019 0.0971 6 6 2.8704 3.4552 -0.1243 7 7 4.1177 3.1446 -0.3674 8 14 2.3720 5.2464 0.0565 9 1 2.1051 5.8238 -1.2854 10 1 1.1446 5.3371 0.8875 11 1 3.4699 6.0020 0.7111 12 7 3.5490 0.6414 0.0058 13 7 3.5370 -0.6436 0.0038 14 6 2.2904 -1.0893 -0.0028 15 16 1.7874 -2.7780 -0.0084 16 6 3.4060 -3.5881 -0.0016 17 6 3.2192 -5.0835 -0.0045 18 6 3.1334 -5.7716 1.1915 19 6 2.9565 -7.1425 1.1903 20 6 2.8764 -7.8292 -0.0068 21 6 2.9677 -7.1430 -1.2052 22 9 2.8901 -7.8131 -2.3757 23 6 3.1394 -5.7677 -1.2035 24 17 3.2536 -4.9047 -2.7055 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 4.7837 3.8445 -0.4542 29 1 3.9653 -3.2896 -0.8883 30 1 3.9563 -3.2927 0.8917 31 1 3.1999 -5.2370 2.1275 32 1 2.8852 -7.6781 2.1255 33 1 2.7422 -8.9007 -0.0069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338567977.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:13 Heat of formation + Delta-G solvation = 21.197613 kcal Electronic energy + Delta-G solvation = -21716.059998 eV Core-core repulsion = 18036.631092 eV Total energy + Delta-G solvation = -3679.428906 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 327.030 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.03107 -42.46352 -40.35066 -37.60890 -35.63192 -35.18207 -33.94804 -31.49293 -31.33078 -28.66791 -28.05808 -27.32787 -23.85297 -23.19560 -22.77968 -22.20388 -19.28574 -18.67767 -17.91868 -17.66559 -17.43754 -17.24903 -16.88350 -16.56299 -16.25624 -15.67675 -15.36132 -15.09871 -15.01792 -14.44130 -14.01193 -13.90918 -13.77614 -13.71364 -13.19112 -13.05196 -12.96293 -12.75276 -12.62520 -12.52753 -12.07006 -11.98684 -11.82158 -11.69743 -11.42029 -10.59182 -10.42043 -10.28326 -9.90844 -9.76818 -8.58080 -8.54096 -6.58534 -0.32982 -0.07090 0.62867 0.95578 1.19054 1.22359 1.41598 1.58248 1.61309 2.18110 2.43388 2.43724 2.51626 2.90281 3.33071 3.39030 3.68680 3.90427 4.06944 4.09112 4.21419 4.40056 4.43715 4.60549 4.66984 4.77880 4.88127 4.93282 4.95697 5.15803 5.26397 5.31363 5.55723 5.67429 6.02560 6.21686 6.75150 6.91523 8.40020 8.63053 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.028269 B = 0.002853 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.243149 B = 9812.655234 C =10030.438238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.522 5.522 3 C 0.320 3.680 4 C -0.474 4.474 5 H 0.103 0.897 6 C 0.030 3.970 7 N -0.790 5.790 8 Si 1.006 2.994 9 H -0.261 1.261 10 H -0.247 1.247 11 H -0.271 1.271 12 N -0.390 5.390 13 N -0.328 5.328 14 C 0.054 3.946 15 S 0.009 5.991 16 C -0.057 4.057 17 C -0.051 4.051 18 C -0.097 4.097 19 C -0.068 4.068 20 C -0.126 4.126 21 C 0.091 3.909 22 F -0.136 7.136 23 C -0.079 4.079 24 Cl -0.061 7.061 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.285 0.715 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.160 0.840 32 H 0.186 0.814 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.597 -18.940 3.655 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.223 5.223 3 C 0.074 3.926 4 C -0.514 4.514 5 H 0.121 0.879 6 C -0.190 4.190 7 N -0.415 5.415 8 Si 0.825 3.175 9 H -0.186 1.186 10 H -0.170 1.170 11 H -0.196 1.196 12 N -0.237 5.237 13 N -0.173 5.173 14 C -0.320 4.320 15 S 0.238 5.762 16 C -0.206 4.206 17 C -0.054 4.054 18 C -0.117 4.117 19 C -0.086 4.086 20 C -0.146 4.146 21 C 0.071 3.929 22 F -0.114 7.114 23 C -0.109 4.109 24 Cl -0.032 7.032 25 H 0.089 0.911 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.178 0.822 32 H 0.203 0.797 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.936 -19.289 3.427 20.470 hybrid contribution 0.101 1.693 -0.833 1.889 sum -5.835 -17.595 2.595 18.718 Atomic orbital electron populations 1.21851 0.75302 1.04548 1.03241 1.46388 1.08103 1.04445 1.63414 1.22026 0.85081 0.89884 0.95652 1.18618 0.96584 0.86511 1.49655 0.87860 1.26981 0.93816 1.06486 0.91744 1.70135 1.03365 1.37103 1.30859 0.84848 0.79330 0.73747 0.79581 1.18564 1.17014 1.19582 1.75273 1.17431 0.99272 1.31719 1.74394 1.17145 1.07035 1.18693 1.26404 0.91088 0.95485 1.19012 1.84336 1.10016 0.86891 1.94948 1.22266 0.97604 0.93130 1.07579 1.19030 1.01297 0.92625 0.92480 1.21497 0.97799 0.95463 0.96946 1.21572 0.94820 0.92921 0.99269 1.21610 1.00791 1.02743 0.89410 1.17633 1.04496 0.87627 0.83132 1.91520 1.93743 1.79826 1.46323 1.21101 1.09495 0.91822 0.88456 1.98405 1.96425 1.76741 1.31628 0.91074 0.89010 0.89111 0.90497 0.89545 0.87660 0.82200 0.79718 0.80498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.28 10.89 127.77 1.39 4.67 16 2 N -0.52 -25.44 3.26 -543.61 -1.77 -27.21 16 3 C 0.32 18.43 7.50 133.23 1.00 19.43 16 4 C -0.47 -25.47 9.05 23.09 0.21 -25.26 16 5 H 0.10 4.91 7.26 -2.92 -0.02 4.89 16 6 C 0.03 1.58 5.49 85.29 0.47 2.05 16 7 N -0.79 -45.10 12.00 21.85 0.26 -44.83 16 8 Si 1.01 37.90 29.57 68.60 2.03 39.93 16 9 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 10 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 11 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 12 N -0.39 -24.60 10.56 -55.01 -0.58 -25.18 16 13 N -0.33 -18.69 11.62 -56.17 -0.65 -19.35 16 14 C 0.05 2.61 8.09 179.18 1.45 4.06 16 15 S 0.01 0.31 21.77 -56.49 -1.23 -0.92 16 16 C -0.06 -1.84 4.95 71.23 0.35 -1.48 16 17 C -0.05 -1.26 5.14 -19.85 -0.10 -1.36 16 18 C -0.10 -1.63 9.70 22.27 0.22 -1.41 16 19 C -0.07 -0.74 10.04 22.27 0.22 -0.52 16 20 C -0.13 -1.66 10.03 22.31 0.22 -1.43 16 21 C 0.09 1.92 7.28 22.39 0.16 2.09 16 22 F -0.14 -3.14 16.84 44.97 0.76 -2.38 16 23 C -0.08 -2.03 6.32 22.36 0.14 -1.89 16 24 Cl -0.06 -1.83 26.96 -2.72 -0.07 -1.90 16 25 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.09 2.72 7.85 -2.39 -0.02 2.70 16 27 H 0.09 2.95 7.48 -2.39 -0.02 2.94 16 28 H 0.28 14.67 8.30 -92.71 -0.77 13.90 16 29 H 0.09 3.18 6.90 -2.39 -0.02 3.17 16 30 H 0.10 3.39 8.08 -2.39 -0.02 3.37 16 31 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 33 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -77.39 326.56 5.64 -71.75 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.17 Total: 11.15 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 5.74 Total: -1.05 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -2.74 Total: -116.57 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.76 Total: -2.38 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -1.23 Total: -0.92 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.07 Total: -1.90 kcal Total: -77.39 5.64 -71.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338567977.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.944 kcal (2) G-P(sol) polarization free energy of solvation -77.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds