Wall clock time and date at job start Tue Mar 31 2020 15:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00122 * 2 1 4 4 H 1.48495 * 109.47410 * 239.99549 * 3 2 1 5 5 H 1.48499 * 109.47080 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47110 * 119.99805 * 3 2 1 7 7 C 1.37877 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00456 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99843 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47275 * 179.97438 * 9 7 2 11 11 N 1.46493 * 109.47393 * 180.02562 * 10 9 7 12 12 C 1.34771 * 120.00462 * 180.02562 * 11 10 9 13 13 O 1.21290 * 119.99661 * 359.97438 * 12 11 10 14 14 C 1.50693 * 120.00369 * 179.97438 * 12 11 10 15 15 H 1.09005 * 115.56205 * 34.31192 * 14 12 11 16 16 C 1.52996 * 117.50268 * 248.62018 * 14 12 11 17 17 C 1.52999 * 60.00349 * 252.50845 * 16 14 12 18 18 H 1.08989 * 117.51806 * 252.51676 * 17 16 14 19 19 C 1.50707 * 117.49809 * 107.48492 * 17 16 14 20 20 C 1.38261 * 119.97822 * 351.38146 * 19 17 16 21 21 C 1.38212 * 120.03379 * 179.97438 * 20 19 17 22 22 C 1.38345 * 119.99944 * 0.02562 * 21 20 19 23 23 Cl 1.73601 * 120.01477 * 180.02562 * 22 21 20 24 24 C 1.38440 * 119.96339 * 0.02562 * 22 21 20 25 25 Cl 1.73601 * 120.02000 * 180.02562 * 24 22 21 26 26 C 1.38197 * 119.97954 * 171.38042 * 19 17 16 27 27 H 0.97001 * 119.99771 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46625 * 59.99782 * 9 7 2 29 29 H 1.08996 * 109.47101 * 300.00253 * 9 7 2 30 30 H 1.08997 * 109.47008 * 60.00005 * 10 9 7 31 31 H 1.09009 * 109.47129 * 300.00225 * 10 9 7 32 32 H 0.97003 * 119.99695 * 359.97438 * 11 10 9 33 33 H 1.09000 * 117.50392 * 145.01578 * 16 14 12 34 34 H 1.09005 * 117.49721 * 0.02562 * 16 14 12 35 35 H 1.08002 * 119.98376 * 0.02562 * 20 19 17 36 36 H 1.08000 * 119.99446 * 180.27536 * 21 20 19 37 37 H 1.08002 * 120.00296 * 0.02562 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5128 -4.9308 -0.0001 12 6 2.1866 -6.0980 0.0003 13 8 3.3995 -6.0980 0.0007 14 6 1.4331 -7.4031 0.0003 15 1 0.4947 -7.4044 -0.5544 16 6 1.5079 -8.2621 1.2641 17 6 2.2552 -8.6935 0.0007 18 1 1.8579 -9.5435 -0.5539 19 6 3.7565 -8.5621 0.0012 20 6 4.3922 -7.9052 1.0385 21 6 5.7690 -7.7844 1.0404 22 6 6.5118 -8.3206 0.0037 23 17 8.2413 -8.1697 0.0060 24 6 5.8752 -8.9774 -1.0355 25 17 6.8059 -9.6513 -2.3368 26 6 4.4970 -9.0983 -1.0352 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5570 -0.8897 29 1 0.6240 -2.5567 0.8902 30 1 2.8719 -3.6044 0.8905 31 1 2.8720 -3.6044 -0.8895 32 1 0.5428 -4.9308 0.0000 33 1 0.6187 -8.8284 1.5411 34 1 2.1018 -7.8830 2.0959 35 1 3.8126 -7.4869 1.8482 36 1 6.2652 -7.2751 1.8532 37 1 3.9998 -9.6109 -1.8454 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342640808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:35 Heat of formation + Delta-G solvation = -22.563518 kcal Electronic energy + Delta-G solvation = -22226.528982 eV Core-core repulsion = 18634.326299 eV Total energy + Delta-G solvation = -3592.202684 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54349 -39.95982 -38.01704 -37.49697 -36.93823 -36.33714 -34.78759 -32.02907 -31.78279 -31.03728 -27.24109 -25.11173 -24.72978 -23.88040 -22.70193 -21.72667 -20.84021 -18.90573 -18.49368 -17.72772 -16.94091 -16.65052 -16.50052 -16.40516 -16.20114 -15.63957 -15.10297 -15.02807 -14.73403 -14.59917 -14.30766 -14.05628 -13.25432 -13.22402 -12.97129 -12.92640 -12.85441 -12.70017 -12.54396 -12.44507 -12.22612 -11.87441 -11.85252 -11.64225 -11.47003 -11.43638 -11.34904 -10.70068 -10.60739 -9.98879 -9.75297 -9.18312 -8.25161 -6.35526 0.00992 0.23314 0.86438 1.24058 1.40812 1.42520 1.50610 1.60171 2.27327 2.44024 2.51202 3.06647 3.09594 3.51839 3.72607 3.83867 3.91191 3.95207 4.14702 4.28587 4.34054 4.50152 4.52803 4.57307 4.76542 4.86409 4.88844 4.93898 4.98872 5.12646 5.19918 5.32917 5.52317 5.52692 5.58750 5.71461 5.79374 6.16151 6.72218 6.78015 7.33939 7.38645 8.86305 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.002820 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.478718 B = 9926.497607 C =11182.341046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.024 3.976 10 C 0.145 3.855 11 N -0.715 5.715 12 C 0.522 3.478 13 O -0.565 6.565 14 C -0.183 4.183 15 H 0.157 0.843 16 C -0.127 4.127 17 C -0.088 4.088 18 H 0.157 0.843 19 C -0.032 4.032 20 C -0.041 4.041 21 C -0.119 4.119 22 C -0.044 4.044 23 Cl -0.064 7.064 24 C -0.051 4.051 25 Cl -0.060 7.060 26 C -0.097 4.097 27 H 0.266 0.734 28 H 0.006 0.994 29 H 0.009 0.991 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.409 0.591 33 H 0.146 0.854 34 H 0.095 0.905 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.515 -23.740 1.194 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.075 0.925 9 C -0.013 4.013 10 C 0.021 3.979 11 N -0.366 5.366 12 C 0.310 3.690 13 O -0.445 6.445 14 C -0.204 4.204 15 H 0.174 0.826 16 C -0.164 4.164 17 C -0.106 4.106 18 H 0.175 0.825 19 C -0.032 4.032 20 C -0.059 4.059 21 C -0.138 4.138 22 C -0.071 4.071 23 Cl -0.035 7.035 24 C -0.079 4.079 25 Cl -0.031 7.031 26 C -0.116 4.116 27 H 0.075 0.925 28 H 0.025 0.975 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.245 0.755 33 H 0.164 0.836 34 H 0.113 0.887 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.465 -23.643 1.072 24.290 hybrid contribution 0.317 1.477 -0.264 1.533 sum 5.782 -22.166 0.809 22.922 Atomic orbital electron populations 1.70040 1.07467 1.28059 1.50927 1.25834 0.95776 1.02973 0.94416 0.85552 0.78380 0.78362 0.79102 1.19496 1.20494 1.19331 1.21451 0.93497 0.92121 1.51643 0.92545 1.19110 0.94217 0.91781 0.96236 1.21111 0.94834 0.82516 0.99390 1.46154 1.11033 1.05488 1.73906 1.20469 0.87653 0.85497 0.75376 1.90734 1.15040 1.87500 1.51264 1.22405 1.02595 0.88074 1.07325 0.82571 1.23327 1.03403 0.99604 0.90089 1.21236 0.88150 0.97471 1.03713 0.82527 1.19159 0.94761 0.95975 0.93321 1.20975 0.93024 0.93653 0.98293 1.21029 0.94322 1.00358 0.98067 1.20823 0.85295 1.03631 0.97364 1.98357 1.09950 1.96763 1.98422 1.20732 0.92827 1.02905 0.91398 1.98358 1.73300 1.83716 1.47694 1.20916 0.90254 1.00874 0.99506 0.92511 0.97528 0.97277 0.93696 0.94195 0.75545 0.83620 0.88659 0.85081 0.84093 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.79 13.29 21.45 0.28 -53.50 16 2 C 0.01 0.50 5.46 84.66 0.46 0.96 16 3 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -30.46 9.11 25.60 0.23 -30.23 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 9 C 0.02 1.19 5.09 29.85 0.15 1.34 16 10 C 0.15 6.03 5.61 86.38 0.48 6.51 16 11 N -0.72 -22.59 5.56 -463.07 -2.57 -25.16 16 12 C 0.52 14.87 7.47 87.66 0.66 15.52 16 13 O -0.57 -19.72 11.70 -3.06 -0.04 -19.76 16 14 C -0.18 -3.13 6.19 -11.54 -0.07 -3.21 16 15 H 0.16 1.83 8.14 -2.38 -0.02 1.81 16 16 C -0.13 -1.56 9.57 30.59 0.29 -1.27 16 17 C -0.09 -1.28 6.04 -11.54 -0.07 -1.35 16 18 H 0.16 1.31 8.14 -2.39 -0.02 1.29 16 19 C -0.03 -0.68 4.36 -19.87 -0.09 -0.76 16 20 C -0.04 -0.99 6.17 22.27 0.14 -0.86 16 21 C -0.12 -3.05 9.83 22.29 0.22 -2.83 16 22 C -0.04 -1.15 6.32 22.34 0.14 -1.01 16 23 Cl -0.06 -1.60 27.96 -2.72 -0.08 -1.67 16 24 C -0.05 -1.27 6.32 22.34 0.14 -1.13 16 25 Cl -0.06 -1.37 27.96 -2.72 -0.08 -1.45 16 26 C -0.10 -2.11 9.52 22.29 0.21 -1.89 16 27 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 28 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.41 10.98 8.47 -92.71 -0.79 10.19 16 33 H 0.15 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.10 1.39 6.18 -2.38 -0.01 1.38 16 35 H 0.13 3.00 5.78 -2.91 -0.02 2.98 16 36 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 37 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -67.22 343.99 2.78 -64.44 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.33 Total: 11.86 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: 2.90 Total: -20.20 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -2.29 Total: -78.67 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.04 Total: -19.76 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 17 Polarization: -2.97 SS G_CDS: -0.15 Total: -3.12 kcal Total: -67.22 2.78 -64.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342640808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.874 kcal (2) G-P(sol) polarization free energy of solvation -67.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds