Wall clock time and date at job start Tue Mar 31 2020 15:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99642 * 180.02562 * 11 10 9 13 13 O 1.21279 * 120.00300 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99773 * 180.02562 * 12 11 10 15 15 H 1.09001 * 115.55176 * 325.58128 * 14 12 11 16 16 C 1.53002 * 117.49966 * 111.25303 * 14 12 11 17 17 C 1.53003 * 117.49977 * 179.91172 * 14 12 11 18 18 H 1.08993 * 117.50338 * 144.99668 * 17 14 12 19 19 C 1.50698 * 117.49679 * 359.97438 * 17 14 12 20 20 C 1.38261 * 119.98351 * 120.00060 * 19 17 14 21 21 C 1.38207 * 120.04448 * 179.97438 * 20 19 17 22 22 C 1.38349 * 119.99553 * 0.02562 * 21 20 19 23 23 Cl 1.73601 * 120.01714 * 179.97438 * 22 21 20 24 24 C 1.38444 * 119.96258 * 0.02562 * 22 21 20 25 25 Cl 1.73598 * 120.01946 * 180.02562 * 24 22 21 26 26 C 1.38210 * 119.98462 * 299.72656 * 19 17 14 27 27 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 29 29 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 30 30 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 31 31 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 32 32 H 0.96998 * 120.00192 * 359.97438 * 11 10 9 33 33 H 1.09002 * 117.49659 * 214.98121 * 16 14 12 34 34 H 1.09003 * 117.49882 * 359.97438 * 16 14 12 35 35 H 1.08001 * 119.98170 * 0.02562 * 20 19 17 36 36 H 1.07998 * 120.00243 * 179.97438 * 21 20 19 37 37 H 1.08005 * 119.99404 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1869 -6.0979 -0.0007 13 8 3.3997 -6.0979 -0.0003 14 6 1.4334 -7.4030 -0.0020 15 1 0.4952 -7.4048 0.5529 16 6 1.5077 -8.2605 -1.2670 17 6 2.2556 -8.6934 -0.0035 18 1 1.8583 -9.5440 0.5502 19 6 3.7568 -8.5619 -0.0043 20 6 4.4980 -9.0990 1.0319 21 6 5.8749 -8.9796 1.0322 22 6 6.5123 -8.3219 -0.0046 23 17 8.2417 -8.1710 -0.0045 24 6 5.7701 -7.7831 -1.0417 25 17 6.5685 -6.9581 -2.3439 26 6 4.3925 -7.9095 -1.0437 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8721 -3.6042 -0.8905 31 1 2.8721 -3.6043 0.8895 32 1 0.5430 -4.9308 -0.0011 33 1 0.6183 -8.8265 -1.5442 34 1 2.1011 -7.8804 -2.0985 35 1 4.0008 -9.6129 1.8413 36 1 6.4531 -9.3991 1.8422 37 1 3.8133 -7.4944 -1.8553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342640818.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:43 Heat of formation + Delta-G solvation = -5.595539 kcal Electronic energy + Delta-G solvation = -22387.901592 eV Core-core repulsion = 18796.434695 eV Total energy + Delta-G solvation = -3591.466897 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56050 -38.86878 -36.98322 -36.45855 -35.99242 -34.79239 -32.86961 -30.91108 -30.63613 -29.61759 -25.56971 -24.21428 -23.51706 -22.78980 -21.08404 -20.78686 -19.71874 -17.89961 -16.85309 -16.34601 -15.93549 -15.54502 -15.17857 -15.04266 -14.56519 -14.41882 -14.05095 -13.97734 -13.88900 -13.05962 -12.92093 -12.43850 -12.33197 -11.99990 -11.84810 -11.80010 -11.57702 -11.22319 -11.06697 -10.97029 -10.83206 -10.70180 -10.66425 -10.58492 -10.33671 -9.85576 -9.54188 -9.28154 -8.73750 -8.53179 -8.37235 -8.27416 -6.11235 -4.14068 0.93567 1.18192 1.88478 2.26613 2.67982 3.28600 3.34558 3.36956 3.39870 3.56735 3.84153 4.31823 4.40511 4.54768 4.63680 4.70555 4.87772 5.01062 5.16119 5.18647 5.26017 5.34228 5.46730 5.57000 5.70880 5.76749 5.98191 6.03076 6.31345 6.31986 6.37226 6.58836 6.71123 6.88263 7.48958 7.58710 7.86849 7.97738 8.25602 8.61187 8.91952 9.51059 11.00348 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.012838 B = 0.003165 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.530139 B = 8845.691293 C =10236.832755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.123 3.877 11 N -0.716 5.716 12 C 0.526 3.474 13 O -0.533 6.533 14 C -0.176 4.176 15 H 0.128 0.872 16 C -0.148 4.148 17 C -0.088 4.088 18 H 0.125 0.875 19 C -0.027 4.027 20 C -0.098 4.098 21 C -0.109 4.109 22 C -0.031 4.031 23 Cl -0.063 7.063 24 C -0.032 4.032 25 Cl -0.058 7.058 26 C -0.028 4.028 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.397 0.603 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.482 -22.976 -0.616 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.001 3.999 11 N -0.364 5.364 12 C 0.311 3.689 13 O -0.412 6.412 14 C -0.197 4.197 15 H 0.146 0.854 16 C -0.185 4.185 17 C -0.107 4.107 18 H 0.143 0.857 19 C -0.027 4.027 20 C -0.117 4.117 21 C -0.128 4.128 22 C -0.058 4.058 23 Cl -0.034 7.034 24 C -0.060 4.060 25 Cl -0.029 7.029 26 C -0.047 4.047 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.231 0.769 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.438 -22.713 -0.730 23.619 hybrid contribution 0.000 1.298 0.025 1.299 sum 6.438 -21.414 -0.705 22.372 Atomic orbital electron populations 1.69948 1.06089 1.26893 1.50402 1.24985 0.94884 0.99404 0.94949 0.86524 0.79877 0.83002 0.78240 1.20530 1.21141 1.19703 1.21048 0.93243 0.90393 1.51348 0.92280 1.19315 0.94177 0.91153 0.97778 1.21718 0.95993 0.81420 1.00775 1.46319 1.10536 1.06423 1.73166 1.19616 0.87733 0.84522 0.77009 1.90746 1.13374 1.86896 1.50157 1.22434 1.01876 0.90812 1.04583 0.85378 1.23169 1.02750 1.01309 0.91292 1.21038 0.89919 0.97324 1.02416 0.85682 1.18827 0.93127 0.96874 0.93917 1.20828 0.92804 1.00008 0.98019 1.20817 0.94628 1.00015 0.97373 1.20677 0.84961 1.03290 0.96899 1.98366 1.09838 1.96777 1.98391 1.20548 0.92759 1.00925 0.91724 1.98375 1.79859 1.77266 1.47382 1.20618 0.90964 0.94574 0.98570 0.92838 0.95986 0.96005 0.92577 0.92576 0.76920 0.87064 0.87818 0.85004 0.84565 0.84958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.12 2.56 5.61 -4.04 -0.02 2.53 16 11 N -0.72 -11.74 5.56 -60.29 -0.33 -12.07 16 12 C 0.53 8.00 7.48 -10.98 -0.08 7.92 16 13 O -0.53 -9.67 11.73 5.56 0.07 -9.60 16 14 C -0.18 -1.82 6.19 -91.77 -0.57 -2.39 16 15 H 0.13 1.04 8.14 -51.93 -0.42 0.61 16 16 C -0.15 -1.24 9.58 -26.69 -0.26 -1.50 16 17 C -0.09 -0.81 6.04 -91.73 -0.55 -1.36 16 18 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 19 C -0.03 -0.31 4.35 -104.62 -0.46 -0.77 16 20 C -0.10 -1.04 9.73 -39.58 -0.39 -1.43 16 21 C -0.11 -1.23 9.83 -39.55 -0.39 -1.62 16 22 C -0.03 -0.41 6.32 -39.46 -0.25 -0.65 16 23 Cl -0.06 -0.78 27.96 -51.86 -1.45 -2.23 16 24 C -0.03 -0.45 6.32 -39.47 -0.25 -0.70 16 25 Cl -0.06 -0.82 27.96 -51.86 -1.45 -2.27 16 26 C -0.03 -0.38 5.97 -39.55 -0.24 -0.62 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.40 5.64 8.47 -40.82 -0.35 5.29 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.98 6.17 -51.93 -0.32 0.66 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.13 1.77 5.80 -52.48 -0.30 1.47 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -31.43 344.05 -10.59 -42.02 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.32 Total: 1.41 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -4.00 Total: -13.58 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.40 Total: -37.34 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -2.90 Total: -4.50 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.43 -10.59 -42.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342640818.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.426 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds