Wall clock time and date at job start Tue Mar 31 2020 15:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99642 * 180.02562 * 11 10 9 13 13 O 1.21279 * 120.00300 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99773 * 180.02562 * 12 11 10 15 15 H 1.09001 * 115.55176 * 325.58128 * 14 12 11 16 16 C 1.53002 * 117.49966 * 111.25303 * 14 12 11 17 17 C 1.53003 * 117.49977 * 179.91172 * 14 12 11 18 18 H 1.08993 * 117.50338 * 144.99668 * 17 14 12 19 19 C 1.50698 * 117.49679 * 359.97438 * 17 14 12 20 20 C 1.38261 * 119.98351 * 120.00060 * 19 17 14 21 21 C 1.38207 * 120.04448 * 179.97438 * 20 19 17 22 22 C 1.38349 * 119.99553 * 0.02562 * 21 20 19 23 23 Cl 1.73601 * 120.01714 * 179.97438 * 22 21 20 24 24 C 1.38444 * 119.96258 * 0.02562 * 22 21 20 25 25 Cl 1.73598 * 120.01946 * 180.02562 * 24 22 21 26 26 C 1.38210 * 119.98462 * 299.72656 * 19 17 14 27 27 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 29 29 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 30 30 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 31 31 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 32 32 H 0.96998 * 120.00192 * 359.97438 * 11 10 9 33 33 H 1.09002 * 117.49659 * 214.98121 * 16 14 12 34 34 H 1.09003 * 117.49882 * 359.97438 * 16 14 12 35 35 H 1.08001 * 119.98170 * 0.02562 * 20 19 17 36 36 H 1.07998 * 120.00243 * 179.97438 * 21 20 19 37 37 H 1.08005 * 119.99404 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1869 -6.0979 -0.0007 13 8 3.3997 -6.0979 -0.0003 14 6 1.4334 -7.4030 -0.0020 15 1 0.4952 -7.4048 0.5529 16 6 1.5077 -8.2605 -1.2670 17 6 2.2556 -8.6934 -0.0035 18 1 1.8583 -9.5440 0.5502 19 6 3.7568 -8.5619 -0.0043 20 6 4.4980 -9.0990 1.0319 21 6 5.8749 -8.9796 1.0322 22 6 6.5123 -8.3219 -0.0046 23 17 8.2417 -8.1710 -0.0045 24 6 5.7701 -7.7831 -1.0417 25 17 6.5685 -6.9581 -2.3439 26 6 4.3925 -7.9095 -1.0437 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8721 -3.6042 -0.8905 31 1 2.8721 -3.6043 0.8895 32 1 0.5430 -4.9308 -0.0011 33 1 0.6183 -8.8265 -1.5442 34 1 2.1011 -7.8804 -2.0985 35 1 4.0008 -9.6129 1.8413 36 1 6.4531 -9.3991 1.8422 37 1 3.8133 -7.4944 -1.8553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342640818.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:42 Heat of formation + Delta-G solvation = -23.123317 kcal Electronic energy + Delta-G solvation = -22388.661653 eV Core-core repulsion = 18796.434695 eV Total energy + Delta-G solvation = -3592.226958 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.53661 -39.94310 -37.98713 -37.47491 -36.96658 -36.34142 -34.79843 -31.92325 -31.73993 -31.14167 -27.24955 -25.15052 -24.78148 -23.70355 -22.71746 -21.76515 -20.84747 -18.92715 -18.50447 -17.69884 -16.93269 -16.65278 -16.49975 -16.38374 -16.21040 -15.58883 -15.12464 -14.99522 -14.77576 -14.58658 -14.32364 -14.02088 -13.25246 -13.22944 -12.97587 -12.90750 -12.84016 -12.69864 -12.53561 -12.40805 -12.24634 -11.93946 -11.81358 -11.66477 -11.47097 -11.41085 -11.36832 -10.76155 -10.61897 -9.97868 -9.61689 -9.24293 -8.26050 -6.36309 0.01860 0.26880 0.89509 1.29208 1.39849 1.39882 1.51459 1.61227 2.26465 2.43273 2.52197 3.06159 3.08638 3.52566 3.68611 3.85634 3.92039 3.99701 4.22280 4.29733 4.37396 4.47611 4.49619 4.52077 4.79352 4.85106 4.88790 4.93095 5.06717 5.10059 5.22474 5.31950 5.51444 5.52529 5.57536 5.75043 5.78477 6.15453 6.71813 6.77059 7.33137 7.38812 8.85653 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.012838 B = 0.003165 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.530139 B = 8845.691293 C =10236.832755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.146 3.854 11 N -0.716 5.716 12 C 0.520 3.480 13 O -0.565 6.565 14 C -0.182 4.182 15 H 0.159 0.841 16 C -0.135 4.135 17 C -0.082 4.082 18 H 0.165 0.835 19 C -0.036 4.036 20 C -0.094 4.094 21 C -0.111 4.111 22 C -0.049 4.049 23 Cl -0.065 7.065 24 C -0.055 4.055 25 Cl -0.073 7.073 26 C -0.044 4.044 27 H 0.266 0.734 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.409 0.591 33 H 0.147 0.853 34 H 0.087 0.913 35 H 0.168 0.832 36 H 0.160 0.840 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.519 -24.636 0.386 25.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.073 0.927 9 C -0.013 4.013 10 C 0.022 3.978 11 N -0.366 5.366 12 C 0.308 3.692 13 O -0.445 6.445 14 C -0.203 4.203 15 H 0.177 0.823 16 C -0.172 4.172 17 C -0.100 4.100 18 H 0.183 0.817 19 C -0.037 4.037 20 C -0.112 4.112 21 C -0.129 4.129 22 C -0.076 4.076 23 Cl -0.036 7.036 24 C -0.083 4.083 25 Cl -0.044 7.044 26 C -0.062 4.062 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.245 0.755 33 H 0.165 0.835 34 H 0.105 0.895 35 H 0.186 0.814 36 H 0.177 0.823 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.461 -24.401 0.268 25.006 hybrid contribution 0.307 1.766 -0.283 1.814 sum 5.767 -22.635 -0.015 23.359 Atomic orbital electron populations 1.70041 1.07430 1.28007 1.50958 1.25823 0.95780 1.02932 0.94393 0.85501 0.78651 0.78702 0.78547 1.19777 1.20280 1.19283 1.21461 0.93428 0.92147 1.51601 0.92715 1.19108 0.94182 0.91740 0.96261 1.21094 0.94835 0.82633 0.99229 1.46148 1.11004 1.05476 1.73991 1.20528 0.87688 0.85581 0.75408 1.90749 1.15092 1.87520 1.51123 1.22409 1.02725 0.88080 1.07043 0.82315 1.23320 1.03590 1.00125 0.90190 1.21301 0.88109 0.97443 1.03144 0.81748 1.19225 0.94929 0.96097 0.93400 1.21282 0.92527 0.99101 0.98330 1.21204 0.95413 0.99142 0.97172 1.20906 0.85039 1.04202 0.97493 1.98356 1.09975 1.96860 1.98419 1.20784 0.93395 1.02014 0.92075 1.98355 1.80160 1.77725 1.48165 1.20701 0.90730 0.95461 0.99353 0.92489 0.97374 0.97328 0.94161 0.94113 0.75538 0.83525 0.89497 0.81415 0.82257 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.14 13.29 21.45 0.28 -53.85 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.55 -30.90 9.11 25.60 0.23 -30.67 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.02 1.23 5.09 29.85 0.15 1.39 16 10 C 0.15 6.24 5.61 86.38 0.48 6.73 16 11 N -0.72 -23.35 5.56 -463.06 -2.57 -25.93 16 12 C 0.52 15.35 7.48 87.66 0.66 16.01 16 13 O -0.56 -20.52 11.73 -3.03 -0.04 -20.56 16 14 C -0.18 -3.19 6.19 -11.54 -0.07 -3.26 16 15 H 0.16 1.85 8.14 -2.39 -0.02 1.83 16 16 C -0.14 -1.83 9.58 30.62 0.29 -1.54 16 17 C -0.08 -1.18 6.04 -11.52 -0.07 -1.25 16 18 H 0.17 1.12 8.14 -2.39 -0.02 1.11 16 19 C -0.04 -0.76 4.35 -19.87 -0.09 -0.85 16 20 C -0.09 -1.72 9.73 22.27 0.22 -1.51 16 21 C -0.11 -2.29 9.83 22.29 0.22 -2.07 16 22 C -0.05 -1.28 6.32 22.35 0.14 -1.14 16 23 Cl -0.06 -1.62 27.96 -2.72 -0.08 -1.69 16 24 C -0.06 -1.59 6.32 22.34 0.14 -1.45 16 25 Cl -0.07 -2.16 27.96 -2.72 -0.08 -2.23 16 26 C -0.04 -1.16 5.97 22.29 0.13 -1.03 16 27 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.41 11.32 8.47 -92.71 -0.79 10.53 16 33 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.52 6.17 -2.39 -0.01 1.51 16 35 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 37 H 0.12 3.39 5.80 -2.91 -0.02 3.37 16 Total: -1.00 -70.07 344.05 2.78 -67.28 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.33 Total: 10.61 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 2.91 Total: -19.63 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -2.29 Total: -79.78 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.04 Total: -20.56 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 17 Polarization: -3.78 SS G_CDS: -0.15 Total: -3.93 kcal Total: -70.07 2.78 -67.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342640818.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.159 kcal (2) G-P(sol) polarization free energy of solvation -70.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds