Wall clock time and date at job start Tue Mar 31 2020 15:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00418 * 2 1 4 4 H 1.48501 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47077 * 300.00674 * 3 2 1 6 6 H 1.48503 * 109.46952 * 60.00167 * 3 2 1 7 7 C 1.37888 * 119.99499 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99227 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00105 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47264 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47484 * 179.97438 * 10 9 7 12 12 C 1.34772 * 120.00219 * 179.97438 * 11 10 9 13 13 O 1.21286 * 119.99953 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00423 * 180.02562 * 12 11 10 15 15 H 1.08998 * 115.55800 * 34.30933 * 14 12 11 16 16 C 1.52997 * 117.49682 * 248.62550 * 14 12 11 17 17 C 1.53000 * 117.50161 * 180.02562 * 14 12 11 18 18 H 1.09001 * 117.51382 * 0.02562 * 17 14 12 19 19 C 1.50700 * 117.49789 * 214.98094 * 17 14 12 20 20 C 1.38271 * 119.97812 * 300.28550 * 19 17 14 21 21 C 1.38202 * 120.03719 * 180.26207 * 20 19 17 22 22 C 1.38351 * 119.99776 * 359.43589 * 21 20 19 23 23 Cl 1.73605 * 120.01731 * 180.25981 * 22 21 20 24 24 C 1.38446 * 119.96216 * 0.28578 * 22 21 20 25 25 Cl 1.73592 * 120.01789 * 180.02562 * 24 22 21 26 26 C 1.38203 * 119.98334 * 119.98697 * 19 17 14 27 27 H 0.97004 * 119.99564 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47531 * 59.99979 * 9 7 2 29 29 H 1.08997 * 109.47338 * 300.00070 * 9 7 2 30 30 H 1.09004 * 109.46967 * 59.99506 * 10 9 7 31 31 H 1.08997 * 109.46896 * 300.00214 * 10 9 7 32 32 H 0.97001 * 119.99918 * 0.02562 * 11 10 9 33 33 H 1.09008 * 117.49754 * 145.01727 * 16 14 12 34 34 H 1.08992 * 117.50125 * 359.97438 * 16 14 12 35 35 H 1.08002 * 119.98440 * 359.97438 * 20 19 17 36 36 H 1.08002 * 120.00402 * 179.72166 * 21 20 19 37 37 H 1.08004 * 119.99874 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5126 -4.9309 0.0001 12 6 2.1863 -6.0981 -0.0003 13 8 3.3992 -6.0982 -0.0017 14 6 1.4328 -7.4032 -0.0003 15 1 0.4941 -7.4042 -0.5542 16 6 1.5084 -8.2625 1.2634 17 6 2.2549 -8.6936 -0.0002 18 1 3.3408 -8.5989 0.0003 19 6 1.7050 -9.8690 -0.7665 20 6 0.4722 -10.3972 -0.4303 21 6 -0.0308 -11.4785 -1.1287 22 6 0.6940 -12.0256 -2.1725 23 17 0.0596 -13.3796 -3.0545 24 6 1.9258 -11.4930 -2.5128 25 17 2.8362 -12.1779 -3.8225 26 6 2.4304 -10.4143 -1.8088 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5568 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 2.8718 -3.6044 0.8894 31 1 2.8717 -3.6045 -0.8905 32 1 0.5425 -4.9308 0.0000 33 1 0.6194 -8.8289 1.5407 34 1 2.1035 -7.8841 2.0944 35 1 -0.0959 -9.9676 0.3815 36 1 -0.9918 -11.8935 -0.8628 37 1 3.3909 -9.9979 -2.0742 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342640823.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:46 Heat of formation + Delta-G solvation = -17.871133 kcal Electronic energy + Delta-G solvation = -21281.379375 eV Core-core repulsion = 17689.380168 eV Total energy + Delta-G solvation = -3591.999206 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.50883 -39.33451 -37.34292 -36.89561 -36.17384 -34.83457 -32.87394 -31.53409 -30.80121 -29.69584 -25.62986 -24.35719 -23.70715 -23.10164 -21.09944 -20.81872 -19.82247 -18.03275 -17.24066 -16.46872 -16.13338 -15.96930 -15.37017 -15.14224 -14.72961 -14.51459 -14.45668 -14.25838 -13.73446 -13.25063 -12.85165 -12.44164 -12.42341 -12.31373 -12.27216 -12.15219 -11.84169 -11.30523 -11.26385 -11.23905 -11.09049 -10.82193 -10.73119 -10.64213 -10.37481 -9.86640 -9.53601 -9.36217 -9.25272 -8.88522 -8.59858 -8.40360 -6.12795 -4.15631 0.47105 0.65845 1.45293 1.81595 2.62438 2.97055 3.26143 3.33728 3.38176 3.51085 3.76813 4.17297 4.22644 4.39377 4.48395 4.54811 4.60975 4.78347 4.81420 5.05487 5.13717 5.24450 5.27228 5.37835 5.51832 5.64269 5.70163 5.75528 6.05341 6.15712 6.28932 6.29391 6.68447 6.84858 7.47555 7.57146 7.85303 7.94760 8.23702 8.57109 8.90564 9.49435 10.98805 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.001884 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.487610 B =14861.179452 C =15022.819229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.716 5.716 12 C 0.533 3.467 13 O -0.550 6.550 14 C -0.170 4.170 15 H 0.126 0.874 16 C -0.142 4.142 17 C -0.093 4.093 18 H 0.132 0.868 19 C -0.029 4.029 20 C -0.105 4.105 21 C -0.094 4.094 22 C -0.038 4.038 23 Cl -0.053 7.053 24 C -0.027 4.027 25 Cl -0.049 7.049 26 C -0.089 4.089 27 H 0.262 0.738 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.399 0.601 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.738 -27.567 -1.939 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.364 5.364 12 C 0.318 3.682 13 O -0.429 6.429 14 C -0.192 4.192 15 H 0.144 0.856 16 C -0.179 4.179 17 C -0.111 4.111 18 H 0.150 0.850 19 C -0.030 4.030 20 C -0.123 4.123 21 C -0.113 4.113 22 C -0.065 4.065 23 Cl -0.024 7.024 24 C -0.055 4.055 25 Cl -0.020 7.020 26 C -0.108 4.108 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.233 0.767 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.984 -27.589 -2.149 27.690 hybrid contribution -0.160 0.832 -0.311 0.903 sum -1.144 -26.757 -2.459 26.894 Atomic orbital electron populations 1.69966 1.06089 1.26800 1.50404 1.25008 0.94912 0.99462 0.94973 0.86452 0.80162 0.83291 0.77637 1.19575 1.20916 1.20918 1.21085 0.93284 0.90356 1.51294 0.92187 1.19329 0.94197 0.91119 0.97882 1.21755 0.96082 0.81413 1.00849 1.46256 1.10628 1.06347 1.73215 1.19497 0.87522 0.84485 0.76666 1.90678 1.13833 1.87616 1.50751 1.22435 1.01848 0.90336 1.04532 0.85635 1.23143 1.02701 1.00842 0.91191 1.21047 0.99881 0.90818 0.99399 0.84969 1.19195 0.93845 0.95286 0.94635 1.21186 0.95442 0.95647 1.00000 1.21023 1.00155 0.96234 0.93899 1.20797 0.94328 0.93868 0.97527 1.98393 1.86191 1.42965 1.74818 1.20745 0.92868 0.97592 0.94258 1.98399 1.73335 1.83925 1.46330 1.20917 1.01215 0.94136 0.94534 0.92875 0.95912 0.95905 0.92500 0.92484 0.76735 0.87370 0.87322 0.84036 0.83860 0.83642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.62 5.46 -17.81 -0.10 1.52 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 10 C 0.12 2.51 5.61 -4.04 -0.02 2.48 16 11 N -0.72 -11.88 5.56 -60.30 -0.33 -12.21 16 12 C 0.53 8.41 7.61 -10.99 -0.08 8.33 16 13 O -0.55 -10.72 16.26 5.55 0.09 -10.63 16 14 C -0.17 -1.84 5.82 -91.77 -0.53 -2.37 16 15 H 0.13 1.13 8.14 -51.93 -0.42 0.70 16 16 C -0.14 -1.20 9.56 -26.76 -0.26 -1.46 16 17 C -0.09 -0.90 5.55 -91.79 -0.51 -1.41 16 18 H 0.13 1.46 7.67 -51.93 -0.40 1.07 16 19 C -0.03 -0.25 5.61 -104.62 -0.59 -0.84 16 20 C -0.10 -0.74 9.29 -39.58 -0.37 -1.11 16 21 C -0.09 -0.68 9.83 -39.55 -0.39 -1.07 16 22 C -0.04 -0.33 6.32 -39.46 -0.25 -0.58 16 23 Cl -0.05 -0.45 27.96 -51.86 -1.45 -1.90 16 24 C -0.03 -0.25 6.32 -39.47 -0.25 -0.50 16 25 Cl -0.05 -0.46 27.96 -51.86 -1.45 -1.91 16 26 C -0.09 -0.82 9.52 -39.56 -0.38 -1.19 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.40 5.66 8.47 -40.82 -0.35 5.32 16 33 H 0.11 0.63 6.18 -51.92 -0.32 0.30 16 34 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.14 0.70 6.03 -52.49 -0.32 0.39 16 36 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 37 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -31.23 351.96 -10.61 -41.84 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.30 Total: 1.06 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -4.18 Total: -12.63 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.40 Total: -37.28 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -2.90 Total: -3.81 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.23 -10.61 -41.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342640823.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.966 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds