Wall clock time and date at job start Tue Mar 31 2020 15:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00418 * 2 1 4 4 H 1.48501 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47077 * 300.00674 * 3 2 1 6 6 H 1.48503 * 109.46952 * 60.00167 * 3 2 1 7 7 C 1.37888 * 119.99499 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99227 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00105 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47264 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47484 * 179.97438 * 10 9 7 12 12 C 1.34772 * 120.00219 * 179.97438 * 11 10 9 13 13 O 1.21286 * 119.99953 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00423 * 180.02562 * 12 11 10 15 15 H 1.08998 * 115.55800 * 34.30933 * 14 12 11 16 16 C 1.52997 * 117.49682 * 248.62550 * 14 12 11 17 17 C 1.53000 * 117.50161 * 180.02562 * 14 12 11 18 18 H 1.09001 * 117.51382 * 0.02562 * 17 14 12 19 19 C 1.50700 * 117.49789 * 214.98094 * 17 14 12 20 20 C 1.38271 * 119.97812 * 300.28550 * 19 17 14 21 21 C 1.38202 * 120.03719 * 180.26207 * 20 19 17 22 22 C 1.38351 * 119.99776 * 359.43589 * 21 20 19 23 23 Cl 1.73605 * 120.01731 * 180.25981 * 22 21 20 24 24 C 1.38446 * 119.96216 * 0.28578 * 22 21 20 25 25 Cl 1.73592 * 120.01789 * 180.02562 * 24 22 21 26 26 C 1.38203 * 119.98334 * 119.98697 * 19 17 14 27 27 H 0.97004 * 119.99564 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47531 * 59.99979 * 9 7 2 29 29 H 1.08997 * 109.47338 * 300.00070 * 9 7 2 30 30 H 1.09004 * 109.46967 * 59.99506 * 10 9 7 31 31 H 1.08997 * 109.46896 * 300.00214 * 10 9 7 32 32 H 0.97001 * 119.99918 * 0.02562 * 11 10 9 33 33 H 1.09008 * 117.49754 * 145.01727 * 16 14 12 34 34 H 1.08992 * 117.50125 * 359.97438 * 16 14 12 35 35 H 1.08002 * 119.98440 * 359.97438 * 20 19 17 36 36 H 1.08002 * 120.00402 * 179.72166 * 21 20 19 37 37 H 1.08004 * 119.99874 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5126 -4.9309 0.0001 12 6 2.1863 -6.0981 -0.0003 13 8 3.3992 -6.0982 -0.0017 14 6 1.4328 -7.4032 -0.0003 15 1 0.4941 -7.4042 -0.5542 16 6 1.5084 -8.2625 1.2634 17 6 2.2549 -8.6936 -0.0002 18 1 3.3408 -8.5989 0.0003 19 6 1.7050 -9.8690 -0.7665 20 6 0.4722 -10.3972 -0.4303 21 6 -0.0308 -11.4785 -1.1287 22 6 0.6940 -12.0256 -2.1725 23 17 0.0596 -13.3796 -3.0545 24 6 1.9258 -11.4930 -2.5128 25 17 2.8362 -12.1779 -3.8225 26 6 2.4304 -10.4143 -1.8088 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5568 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 2.8718 -3.6044 0.8894 31 1 2.8717 -3.6045 -0.8905 32 1 0.5425 -4.9308 0.0000 33 1 0.6194 -8.8289 1.5407 34 1 2.1035 -7.8841 2.0944 35 1 -0.0959 -9.9676 0.3815 36 1 -0.9918 -11.8935 -0.8628 37 1 3.3909 -9.9979 -2.0742 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342640823.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:45 Heat of formation + Delta-G solvation = -34.901813 kcal Electronic energy + Delta-G solvation = -21282.117880 eV Core-core repulsion = 17689.380168 eV Total energy + Delta-G solvation = -3592.737712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36536 -40.35076 -38.15383 -37.56105 -37.02805 -36.40649 -34.81040 -32.16105 -31.78217 -31.19837 -27.28044 -25.23186 -24.78726 -23.85133 -22.74904 -21.69180 -20.99356 -18.84989 -18.48361 -18.12909 -16.97817 -16.78355 -16.47970 -16.44708 -16.41480 -15.76687 -15.16290 -15.03791 -14.82332 -14.73591 -14.31082 -13.82976 -13.24103 -13.18035 -13.04666 -12.97148 -12.94441 -12.85936 -12.55549 -12.50233 -12.25869 -11.96101 -11.92187 -11.70670 -11.52832 -11.48159 -11.43123 -10.84286 -10.61400 -10.02177 -9.98235 -9.56151 -8.24933 -6.35040 -0.16719 0.05227 0.79626 1.17440 1.40471 1.41831 1.50929 1.54589 2.14915 2.34969 2.46275 2.96611 3.09908 3.42363 3.61433 3.67500 3.84431 3.91558 4.07873 4.16903 4.20671 4.38214 4.48677 4.50590 4.69624 4.76231 4.84889 4.89193 4.96381 5.06411 5.09855 5.29401 5.40738 5.49690 5.57216 5.58024 5.78591 6.15918 6.64131 6.78457 7.28514 7.34300 8.86971 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.001884 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.487610 B =14861.179452 C =15022.819229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.140 3.860 11 N -0.712 5.712 12 C 0.531 3.469 13 O -0.592 6.592 14 C -0.178 4.178 15 H 0.152 0.848 16 C -0.118 4.118 17 C -0.092 4.092 18 H 0.111 0.889 19 C -0.034 4.034 20 C -0.094 4.094 21 C -0.090 4.090 22 C -0.047 4.047 23 Cl -0.055 7.055 24 C -0.041 4.041 25 Cl -0.058 7.058 26 C -0.101 4.101 27 H 0.266 0.734 28 H 0.009 0.991 29 H 0.011 0.989 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.412 0.588 33 H 0.147 0.853 34 H 0.100 0.900 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 -28.348 -1.109 28.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.016 3.984 11 N -0.362 5.362 12 C 0.319 3.681 13 O -0.474 6.474 14 C -0.198 4.198 15 H 0.170 0.830 16 C -0.155 4.155 17 C -0.110 4.110 18 H 0.129 0.871 19 C -0.034 4.034 20 C -0.112 4.112 21 C -0.108 4.108 22 C -0.074 4.074 23 Cl -0.026 7.026 24 C -0.068 4.068 25 Cl -0.029 7.029 26 C -0.120 4.120 27 H 0.075 0.925 28 H 0.027 0.973 29 H 0.029 0.971 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.248 0.752 33 H 0.165 0.835 34 H 0.119 0.881 35 H 0.189 0.811 36 H 0.187 0.813 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.236 -28.394 -1.319 28.513 hybrid contribution 0.227 1.029 -0.564 1.196 sum -2.008 -27.365 -1.883 27.503 Atomic orbital electron populations 1.70059 1.07465 1.27934 1.51032 1.25866 0.95820 1.03064 0.94463 0.85406 0.78943 0.78844 0.77914 1.19059 1.20268 1.20153 1.21499 0.93550 0.92005 1.51438 0.92432 1.19131 0.94209 0.91680 0.96442 1.21217 0.95060 0.82408 0.99694 1.46077 1.11202 1.05401 1.73566 1.20338 0.87265 0.85633 0.74905 1.90658 1.15974 1.88325 1.52419 1.22370 1.02386 0.87679 1.07398 0.83047 1.23338 1.03460 0.98915 0.89823 1.20932 0.98908 0.90527 1.00660 0.87080 1.19141 0.94657 0.95104 0.94521 1.21476 0.94557 0.94978 1.00144 1.21347 1.00795 0.95827 0.92853 1.21010 0.94322 0.94003 0.98114 1.98392 1.86096 1.43078 1.75001 1.20833 0.93398 0.98085 0.94493 1.98390 1.73649 1.84057 1.46795 1.20972 1.01436 0.94449 0.95107 0.92526 0.97311 0.97095 0.93546 0.93816 0.75159 0.83486 0.88119 0.81051 0.81343 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.61 13.29 21.45 0.28 -53.32 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.55 -30.27 9.11 25.60 0.23 -30.03 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 9 C 0.02 1.13 5.09 29.85 0.15 1.28 16 10 C 0.14 5.91 5.61 86.38 0.48 6.39 16 11 N -0.71 -23.44 5.56 -463.06 -2.57 -26.01 16 12 C 0.53 16.50 7.61 87.66 0.67 17.17 16 13 O -0.59 -23.47 16.26 -3.05 -0.05 -23.52 16 14 C -0.18 -3.44 5.82 -11.54 -0.07 -3.51 16 15 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 16 C -0.12 -1.63 9.56 30.58 0.29 -1.34 16 17 C -0.09 -1.62 5.55 -11.55 -0.06 -1.69 16 18 H 0.11 2.47 7.67 -2.39 -0.02 2.45 16 19 C -0.03 -0.51 5.61 -19.87 -0.11 -0.62 16 20 C -0.09 -0.97 9.29 22.27 0.21 -0.76 16 21 C -0.09 -0.99 9.83 22.29 0.22 -0.77 16 22 C -0.05 -0.74 6.32 22.35 0.14 -0.60 16 23 Cl -0.05 -0.86 27.96 -2.72 -0.08 -0.93 16 24 C -0.04 -0.73 6.32 22.34 0.14 -0.59 16 25 Cl -0.06 -1.08 27.96 -2.72 -0.08 -1.16 16 26 C -0.10 -1.78 9.52 22.29 0.21 -1.56 16 27 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.41 11.32 8.47 -92.71 -0.79 10.53 16 33 H 0.15 0.89 6.18 -2.38 -0.01 0.87 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.17 0.71 6.03 -2.91 -0.02 0.69 16 36 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -68.48 351.96 2.83 -65.64 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.33 Total: 9.79 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 2.97 Total: -15.80 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -2.29 Total: -79.33 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.05 Total: -23.52 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.15 Total: -2.09 kcal Total: -68.48 2.83 -65.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342640823.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.740 kcal (2) G-P(sol) polarization free energy of solvation -68.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds