Wall clock time and date at job start Tue Mar 31 2020 15:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99875 * 2 1 4 4 H 1.48496 * 109.47089 * 269.99579 * 3 2 1 5 5 H 1.48505 * 109.46856 * 29.99559 * 3 2 1 6 6 H 1.48501 * 109.47079 * 149.99669 * 3 2 1 7 7 C 1.37879 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99750 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99819 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46751 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.46764 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99888 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47140 * 180.02562 * 12 11 10 14 14 C 1.32951 * 119.87905 * 94.72253 * 13 12 11 15 15 C 1.47810 * 118.32570 * 181.45123 * 14 13 12 16 16 C 1.39102 * 121.45924 * 195.01430 * 15 14 13 17 17 C 1.38235 * 119.55884 * 178.48226 * 16 15 14 18 18 Cl 1.73598 * 119.85180 * 180.02562 * 17 16 15 19 19 C 1.38517 * 120.28975 * 0.04083 * 17 16 15 20 20 C 1.38407 * 120.50097 * 0.31935 * 19 17 16 21 21 Cl 1.73595 * 120.09993 * 179.97438 * 20 19 17 22 22 C 1.38376 * 119.80364 * 359.97438 * 20 19 17 23 23 O 1.35829 * 121.28903 * 179.18339 * 22 20 19 24 24 C 1.42711 * 117.39432 * 146.26872 * 23 22 20 25 25 H 0.96998 * 120.00025 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47021 * 60.00660 * 9 7 2 27 27 H 1.08997 * 109.47467 * 300.00068 * 9 7 2 28 28 H 1.08995 * 109.47210 * 60.00108 * 10 9 7 29 29 H 1.08997 * 109.46954 * 300.00093 * 10 9 7 30 30 H 1.00902 * 111.00533 * 56.04323 * 11 10 9 31 31 H 1.09000 * 109.47033 * 300.00113 * 12 11 10 32 32 H 1.09001 * 109.46544 * 60.00058 * 12 11 10 33 33 H 1.08004 * 120.83849 * 1.65369 * 14 13 12 34 34 H 1.08000 * 120.22193 * 358.50840 * 16 15 14 35 35 H 1.08000 * 119.74645 * 180.30969 * 19 17 16 36 36 H 1.09004 * 109.20417 * 286.36441 * 24 23 22 37 37 H 1.08998 * 109.21391 * 167.04979 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4906 -2.6364 0.0022 12 6 6.0171 -4.0079 0.0027 13 6 7.5235 -3.9676 0.0046 14 6 8.1867 -4.0449 1.1542 15 6 9.6625 -3.9693 1.1191 16 6 10.4350 -4.3451 2.2131 17 6 11.8134 -4.2884 2.1264 18 17 12.7848 -4.7562 3.4870 19 6 12.4229 -3.8596 0.9587 20 6 11.6612 -3.4770 -0.1317 21 17 12.4360 -2.9407 -1.5897 22 6 10.2803 -3.5231 -0.0563 23 8 9.5035 -3.1391 -1.1022 24 6 8.2721 -3.8341 -1.2955 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6800 0.8912 27 1 3.8752 -0.6803 -0.8888 28 1 3.6586 -3.1501 -0.8892 29 1 3.6579 -3.1505 0.8907 30 1 5.8516 -2.1105 0.7840 31 1 5.6669 -4.5311 0.8924 32 1 5.6683 -4.5312 -0.8876 33 1 7.6606 -4.1632 2.0900 34 1 9.9609 -4.6793 3.1242 35 1 13.5006 -3.8235 0.8989 36 1 8.4795 -4.8272 -1.6940 37 1 7.6576 -3.2837 -2.0079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344359671.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:11 Heat of formation + Delta-G solvation = -33.382342 kcal Electronic energy + Delta-G solvation = -21754.582952 eV Core-core repulsion = 18161.911129 eV Total energy + Delta-G solvation = -3592.671823 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.92158 -39.15464 -38.01856 -37.68673 -37.18055 -35.73521 -34.55009 -32.54809 -31.32446 -31.06193 -27.41061 -27.10731 -25.12891 -23.94494 -23.26777 -22.28509 -19.64652 -19.28254 -18.95693 -18.15396 -17.44841 -16.91247 -16.41448 -16.35772 -15.99879 -15.48229 -15.38372 -15.20722 -14.90098 -14.69288 -14.55996 -14.28365 -13.93118 -13.49250 -13.30758 -13.24474 -12.89639 -12.84221 -12.56900 -12.36952 -12.19438 -11.99567 -11.97741 -11.83748 -11.66215 -11.48223 -11.40976 -10.94197 -10.77100 -9.68235 -9.36862 -9.04509 -8.30067 -6.34345 -0.52922 -0.17047 0.75409 1.02121 1.19318 1.38035 1.38389 1.50892 2.13781 2.36333 2.37265 3.05880 3.22805 3.41276 3.49639 3.63093 3.84367 3.91028 4.10802 4.28958 4.35657 4.38974 4.45171 4.47426 4.60227 4.62461 4.69278 4.81713 4.89373 4.97291 5.15725 5.27642 5.29472 5.49380 5.54587 5.63041 6.07636 6.08308 6.24633 6.46715 6.74517 7.30793 8.86430 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016882 B = 0.002348 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.221900 B =11923.390330 C =12487.273889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.532 4.532 8 H 0.035 0.965 9 C -0.006 4.006 10 C 0.088 3.912 11 N -0.691 5.691 12 C 0.100 3.900 13 C -0.137 4.137 14 C -0.104 4.104 15 C -0.107 4.107 16 C -0.056 4.056 17 C -0.055 4.055 18 Cl -0.049 7.049 19 C -0.069 4.069 20 C -0.063 4.063 21 Cl -0.046 7.046 22 C 0.126 3.874 23 O -0.311 6.311 24 C 0.100 3.900 25 H 0.267 0.733 26 H 0.018 0.982 27 H 0.020 0.980 28 H 0.061 0.939 29 H 0.022 0.978 30 H 0.341 0.659 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.154 0.846 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.088 0.912 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.070 -11.990 3.548 32.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.571 4.571 8 H 0.053 0.947 9 C -0.044 4.044 10 C -0.041 4.041 11 N -0.322 5.322 12 C -0.028 4.028 13 C -0.138 4.138 14 C -0.123 4.123 15 C -0.108 4.108 16 C -0.074 4.074 17 C -0.082 4.082 18 Cl -0.020 7.020 19 C -0.088 4.088 20 C -0.090 4.090 21 Cl -0.017 7.017 22 C 0.079 3.921 23 O -0.225 6.225 24 C 0.026 3.974 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.040 0.960 30 H 0.159 0.841 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.171 0.829 34 H 0.184 0.816 35 H 0.184 0.816 36 H 0.106 0.894 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 30.140 -11.674 2.685 32.433 hybrid contribution -0.553 0.441 0.882 1.131 sum 29.587 -11.233 3.568 31.848 Atomic orbital electron populations 1.70058 1.08259 1.28189 1.52600 1.25981 0.95590 1.03477 0.94102 0.85630 0.79403 0.78275 0.79123 1.19396 1.21065 1.17102 1.21416 0.91953 0.93220 1.50490 0.94706 1.19446 0.93500 0.94708 0.96711 1.21640 0.85765 0.97261 0.99417 1.60533 1.07701 1.13632 1.50375 1.20834 0.89260 0.90230 1.02523 1.22655 0.96104 0.99610 0.95386 1.21658 0.90284 1.01278 0.99062 1.19043 0.94590 1.04426 0.92729 1.21214 0.91121 0.96351 0.98753 1.20614 0.91801 1.05474 0.90316 1.98394 1.70503 1.90586 1.42483 1.21000 1.01657 0.96887 0.89250 1.20194 0.89605 1.07930 0.91288 1.98386 1.80179 1.88603 1.34536 1.18970 0.89394 0.95980 0.87762 1.86090 1.32244 1.58634 1.45516 1.21913 0.81312 0.98655 0.95483 0.92465 0.96381 0.96135 0.92020 0.96018 0.84072 0.93113 0.89364 0.82884 0.81620 0.81596 0.89402 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 2 C 0.01 0.32 5.47 84.66 0.46 0.78 16 3 Si 0.95 44.51 27.47 68.60 1.88 46.40 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 7 C -0.53 -30.40 9.66 25.60 0.25 -30.15 16 8 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 9 C -0.01 -0.27 4.30 29.85 0.13 -0.14 16 10 C 0.09 3.25 5.62 86.31 0.49 3.74 16 11 N -0.69 -20.11 6.49 -517.92 -3.36 -23.47 16 12 C 0.10 2.17 5.83 85.56 0.50 2.67 16 13 C -0.14 -2.66 5.55 -17.65 -0.10 -2.76 16 14 C -0.10 -1.84 9.64 23.63 0.23 -1.61 16 15 C -0.11 -1.96 5.81 -20.09 -0.12 -2.08 16 16 C -0.06 -0.82 9.62 22.48 0.22 -0.61 16 17 C -0.05 -0.81 6.32 22.34 0.14 -0.67 16 18 Cl -0.05 -0.63 28.94 -2.72 -0.08 -0.71 16 19 C -0.07 -1.05 9.59 22.38 0.21 -0.83 16 20 C -0.06 -1.19 6.32 22.34 0.14 -1.05 16 21 Cl -0.05 -0.87 28.57 -2.72 -0.08 -0.95 16 22 C 0.13 2.66 6.45 22.75 0.15 2.81 16 23 O -0.31 -7.22 9.93 -91.63 -0.91 -8.13 16 24 C 0.10 1.94 6.96 71.21 0.50 2.43 16 25 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 26 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 27 H 0.02 0.94 7.57 -2.39 -0.02 0.93 16 28 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.34 9.61 8.72 -89.69 -0.78 8.83 16 31 H 0.05 1.03 8.02 -2.39 -0.02 1.01 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.15 2.16 8.04 -2.91 -0.02 2.14 16 34 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 35 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.13 2.47 8.11 -2.39 -0.02 2.45 16 Total: -1.00 -65.82 345.91 1.21 -64.61 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.27 Total: 8.92 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 3.19 Total: -27.48 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -3.06 Total: -82.66 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.91 Total: -8.13 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.40 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.16 Total: -1.67 kcal Total: -65.82 1.21 -64.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344359671.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.226 kcal (2) G-P(sol) polarization free energy of solvation -65.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds