Wall clock time and date at job start Tue Mar 31 2020 15:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99893 * 2 1 4 4 H 1.48501 * 109.46793 * 269.99964 * 3 2 1 5 5 H 1.48498 * 109.47043 * 29.99613 * 3 2 1 6 6 H 1.48505 * 109.46911 * 149.99890 * 3 2 1 7 7 C 1.37880 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99481 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99588 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.46702 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00472 * 286.09100 * 10 9 7 12 12 C 1.53001 * 109.46689 * 274.91522 * 11 10 9 13 13 C 1.52998 * 117.50173 * 246.97707 * 12 11 10 14 14 C 1.53005 * 117.49826 * 178.31788 * 12 11 10 15 15 C 1.34784 * 119.99414 * 106.08632 * 10 9 7 16 16 O 1.21561 * 119.99499 * 186.64826 * 15 10 9 17 17 C 1.47765 * 120.00397 * 6.64386 * 15 10 9 18 18 C 1.39629 * 120.14897 * 325.31467 * 17 15 10 19 19 C 1.37903 * 119.89352 * 179.71713 * 18 17 15 20 20 C 1.38411 * 120.18911 * 0.23749 * 19 18 17 21 21 C 1.38367 * 120.30482 * 0.02562 * 20 19 18 22 22 Cl 1.73611 * 119.94561 * 180.02562 * 21 20 19 23 23 C 1.38264 * 120.11003 * 0.02562 * 21 20 19 24 24 Cl 1.73596 * 120.10231 * 180.02562 * 23 21 20 25 25 H 0.97003 * 119.99817 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47186 * 60.00049 * 9 7 2 27 27 H 1.08994 * 109.47117 * 299.99619 * 9 7 2 28 28 H 1.08999 * 109.46844 * 34.90975 * 11 10 9 29 29 H 1.08990 * 109.47684 * 154.91826 * 11 10 9 30 30 H 1.09005 * 115.55103 * 32.65223 * 12 11 10 31 31 H 1.09007 * 117.49108 * 0.02562 * 13 12 11 32 32 H 1.09003 * 117.50463 * 145.01593 * 13 12 11 33 33 H 1.09000 * 117.49617 * 214.97617 * 14 12 11 34 34 H 1.08999 * 117.49715 * 359.97438 * 14 12 11 35 35 H 1.08005 * 120.05551 * 359.97438 * 18 17 15 36 36 H 1.07999 * 119.90766 * 180.25532 * 19 18 17 37 37 H 1.08005 * 119.84292 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 3.9121 -3.3823 1.2217 12 6 5.1315 -3.1074 2.1040 13 6 6.1303 -4.2489 2.3044 14 6 5.2064 -3.8298 3.4506 15 6 4.5299 -3.1034 -1.1188 16 8 4.8235 -4.2825 -1.1551 17 6 4.7538 -2.2494 -2.3037 18 6 3.8654 -1.2136 -2.5996 19 6 4.0827 -0.4161 -3.7035 20 6 5.1760 -0.6427 -4.5215 21 6 6.0585 -1.6703 -4.2388 22 17 7.4272 -1.9457 -5.2708 23 6 5.8520 -2.4782 -3.1359 24 17 6.9596 -3.7669 -2.7811 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6799 0.8911 27 1 3.8752 -0.6804 -0.8888 28 1 3.0041 -3.1215 1.7653 29 1 3.8862 -4.4392 0.9569 30 1 5.5291 -2.0937 2.0539 31 1 5.9188 -5.1957 1.8073 32 1 7.1850 -3.9863 2.3864 33 1 5.6537 -3.2916 4.2863 34 1 4.3867 -4.5006 3.7082 35 1 3.0118 -1.0346 -1.9627 36 1 3.3980 0.3877 -3.9303 37 1 5.3406 -0.0149 -5.3848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349399346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:05 Heat of formation + Delta-G solvation = 28.339573 kcal Electronic energy + Delta-G solvation = -23519.179753 eV Core-core repulsion = 19929.184393 eV Total energy + Delta-G solvation = -3589.995360 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.20787 -38.40454 -36.94803 -36.43478 -36.28367 -35.05594 -32.64482 -31.26846 -30.58166 -28.45207 -26.74026 -23.63635 -22.71769 -22.40585 -22.09495 -20.58947 -19.20549 -17.22537 -17.08492 -16.67206 -16.15624 -15.57468 -15.00492 -14.73912 -14.59243 -14.16927 -14.09181 -13.88764 -13.47278 -13.10430 -12.66661 -12.57877 -12.05621 -11.83926 -11.72702 -11.52821 -11.35126 -11.30179 -11.15597 -11.09258 -10.95094 -10.65578 -10.47215 -10.38716 -10.16153 -9.75403 -9.64895 -9.23516 -8.96505 -8.76784 -8.48671 -7.86675 -6.39585 -4.43142 0.87836 1.08766 1.90997 2.32852 3.02832 3.10553 3.14450 3.16441 3.52858 3.81947 4.09965 4.10276 4.68318 4.87775 5.00906 5.03466 5.08733 5.20379 5.27086 5.31246 5.45154 5.60050 5.72701 5.82200 5.93913 6.06331 6.10705 6.21214 6.26228 6.32854 6.35328 6.40617 6.57112 6.59923 6.73583 7.12775 7.29916 7.92432 8.26346 8.65272 8.74315 9.17741 10.71852 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.009774 B = 0.006182 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.003107 B = 4528.550478 C = 6785.622320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.082 3.918 3 Si 0.859 3.141 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.084 0.916 9 C 0.178 3.822 10 N -0.577 5.577 11 C 0.151 3.849 12 C -0.163 4.163 13 C -0.177 4.177 14 C -0.177 4.177 15 C 0.558 3.442 16 O -0.537 6.537 17 C -0.110 4.110 18 C -0.077 4.077 19 C -0.121 4.121 20 C -0.082 4.082 21 C -0.053 4.053 22 Cl -0.058 7.058 23 C 0.013 3.987 24 Cl -0.031 7.031 25 H 0.270 0.730 26 H 0.031 0.969 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.194 0.806 36 H 0.143 0.857 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.102 -0.549 -4.103 11.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.124 4.124 3 Si 0.685 3.315 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.102 0.898 9 C 0.058 3.942 10 N -0.306 5.306 11 C 0.028 3.972 12 C -0.182 4.182 13 C -0.214 4.214 14 C -0.214 4.214 15 C 0.345 3.655 16 O -0.416 6.416 17 C -0.115 4.115 18 C -0.095 4.095 19 C -0.139 4.139 20 C -0.102 4.102 21 C -0.080 4.080 22 Cl -0.030 7.030 23 C -0.016 4.016 24 Cl -0.001 7.001 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.210 0.790 36 H 0.160 0.840 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.289 -1.191 -4.148 12.086 hybrid contribution 0.522 1.059 -0.034 1.181 sum 11.811 -0.132 -4.182 12.530 Atomic orbital electron populations 1.69876 1.06208 1.27559 1.47899 1.24886 0.94727 0.98809 0.93953 0.87094 0.80870 0.84094 0.79462 1.19259 1.20482 1.18510 1.21317 0.88719 0.95342 1.53023 0.89832 1.20651 0.96031 0.78746 0.98807 1.47644 1.58208 1.15285 1.09436 1.20909 0.96276 0.95917 0.84133 1.22751 0.99693 0.97444 0.98303 1.22992 0.96131 0.99705 1.02542 1.22898 1.02720 1.03998 0.91831 1.17878 0.78135 0.86873 0.82618 1.90746 1.52483 1.15364 1.83024 1.19864 0.95586 0.98783 0.97219 1.22921 1.00045 0.90657 0.95855 1.21302 0.97412 1.00787 0.94412 1.21184 0.93316 0.95584 1.00071 1.20538 0.93630 0.99531 0.94331 1.98361 1.42425 1.96019 1.66152 1.20751 0.93595 0.92449 0.94792 1.98394 1.60107 1.47408 1.94210 0.92008 0.95089 0.92801 0.89189 0.90072 0.87964 0.88621 0.89524 0.89137 0.88760 0.78956 0.83953 0.84137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.74 13.96 55.43 0.77 -22.97 16 2 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.86 18.11 27.47 -169.99 -4.67 13.44 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.30 6.54 56.52 0.37 -4.93 16 7 C -0.55 -13.23 8.10 -34.44 -0.28 -13.51 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 9 C 0.18 3.71 3.79 -5.19 -0.02 3.69 16 10 N -0.58 -11.48 2.51 -176.21 -0.44 -11.92 16 11 C 0.15 2.71 5.73 -4.04 -0.02 2.68 16 12 C -0.16 -2.55 6.01 -90.62 -0.54 -3.09 16 13 C -0.18 -2.48 10.18 -26.69 -0.27 -2.75 16 14 C -0.18 -2.29 10.26 -26.69 -0.27 -2.57 16 15 C 0.56 11.33 7.16 -12.36 -0.09 11.24 16 16 O -0.54 -11.65 14.49 5.31 0.08 -11.57 16 17 C -0.11 -2.05 5.51 -104.95 -0.58 -2.63 16 18 C -0.08 -1.35 7.42 -39.19 -0.29 -1.64 16 19 C -0.12 -1.74 10.03 -39.64 -0.40 -2.13 16 20 C -0.08 -1.08 9.82 -39.47 -0.39 -1.46 16 21 C -0.05 -0.78 6.32 -39.52 -0.25 -1.03 16 22 Cl -0.06 -0.76 27.95 -51.86 -1.45 -2.21 16 23 C 0.01 0.22 6.34 -39.03 -0.25 -0.03 16 24 Cl -0.03 -0.52 25.64 -51.86 -1.33 -1.85 16 25 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 26 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 27 H 0.05 1.09 3.11 -52.84 -0.16 0.92 16 28 H 0.09 1.66 7.86 -51.93 -0.41 1.25 16 29 H 0.08 1.48 6.95 -51.93 -0.36 1.12 16 30 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 31 H 0.10 1.40 8.04 -51.93 -0.42 0.98 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.19 3.81 4.07 -52.48 -0.21 3.59 16 36 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 37 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -26.90 337.18 -9.77 -36.68 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.06 Total: 6.60 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -3.75 Total: -11.29 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.33 Total: -34.88 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.57 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -4.67 Total: 13.44 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -2.78 Total: -4.06 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.90 -9.77 -36.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349399346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.015 kcal (2) G-P(sol) polarization free energy of solvation -26.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds