Wall clock time and date at job start Tue Mar 31 2020 15:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99893 * 2 1 4 4 H 1.48501 * 109.46793 * 269.99964 * 3 2 1 5 5 H 1.48498 * 109.47043 * 29.99613 * 3 2 1 6 6 H 1.48505 * 109.46911 * 149.99890 * 3 2 1 7 7 C 1.37880 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99481 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99588 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.46702 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00472 * 286.09100 * 10 9 7 12 12 C 1.53001 * 109.46689 * 274.91522 * 11 10 9 13 13 C 1.52998 * 117.50173 * 246.97707 * 12 11 10 14 14 C 1.53005 * 117.49826 * 178.31788 * 12 11 10 15 15 C 1.34784 * 119.99414 * 106.08632 * 10 9 7 16 16 O 1.21561 * 119.99499 * 186.64826 * 15 10 9 17 17 C 1.47765 * 120.00397 * 6.64386 * 15 10 9 18 18 C 1.39629 * 120.14897 * 325.31467 * 17 15 10 19 19 C 1.37903 * 119.89352 * 179.71713 * 18 17 15 20 20 C 1.38411 * 120.18911 * 0.23749 * 19 18 17 21 21 C 1.38367 * 120.30482 * 0.02562 * 20 19 18 22 22 Cl 1.73611 * 119.94561 * 180.02562 * 21 20 19 23 23 C 1.38264 * 120.11003 * 0.02562 * 21 20 19 24 24 Cl 1.73596 * 120.10231 * 180.02562 * 23 21 20 25 25 H 0.97003 * 119.99817 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47186 * 60.00049 * 9 7 2 27 27 H 1.08994 * 109.47117 * 299.99619 * 9 7 2 28 28 H 1.08999 * 109.46844 * 34.90975 * 11 10 9 29 29 H 1.08990 * 109.47684 * 154.91826 * 11 10 9 30 30 H 1.09005 * 115.55103 * 32.65223 * 12 11 10 31 31 H 1.09007 * 117.49108 * 0.02562 * 13 12 11 32 32 H 1.09003 * 117.50463 * 145.01593 * 13 12 11 33 33 H 1.09000 * 117.49617 * 214.97617 * 14 12 11 34 34 H 1.08999 * 117.49715 * 359.97438 * 14 12 11 35 35 H 1.08005 * 120.05551 * 359.97438 * 18 17 15 36 36 H 1.07999 * 119.90766 * 180.25532 * 19 18 17 37 37 H 1.08005 * 119.84292 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 3.9121 -3.3823 1.2217 12 6 5.1315 -3.1074 2.1040 13 6 6.1303 -4.2489 2.3044 14 6 5.2064 -3.8298 3.4506 15 6 4.5299 -3.1034 -1.1188 16 8 4.8235 -4.2825 -1.1551 17 6 4.7538 -2.2494 -2.3037 18 6 3.8654 -1.2136 -2.5996 19 6 4.0827 -0.4161 -3.7035 20 6 5.1760 -0.6427 -4.5215 21 6 6.0585 -1.6703 -4.2388 22 17 7.4272 -1.9457 -5.2708 23 6 5.8520 -2.4782 -3.1359 24 17 6.9596 -3.7669 -2.7811 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6799 0.8911 27 1 3.8752 -0.6804 -0.8888 28 1 3.0041 -3.1215 1.7653 29 1 3.8862 -4.4392 0.9569 30 1 5.5291 -2.0937 2.0539 31 1 5.9188 -5.1957 1.8073 32 1 7.1850 -3.9863 2.3864 33 1 5.6537 -3.2916 4.2863 34 1 4.3867 -4.5006 3.7082 35 1 3.0118 -1.0346 -1.9627 36 1 3.3980 0.3877 -3.9303 37 1 5.3406 -0.0149 -5.3848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349399346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:04 Heat of formation + Delta-G solvation = 15.888788 kcal Electronic energy + Delta-G solvation = -23519.719660 eV Core-core repulsion = 19929.184393 eV Total energy + Delta-G solvation = -3590.535266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.63298 -39.72146 -38.22768 -37.64947 -37.51680 -36.61014 -34.50311 -32.54173 -31.83645 -30.16736 -28.18961 -25.11176 -24.16665 -23.79580 -23.20469 -21.88334 -20.64100 -19.06136 -18.52530 -18.02945 -17.54834 -16.88518 -16.42870 -16.25085 -15.87689 -15.69024 -15.36528 -15.13848 -14.87368 -14.61075 -14.32369 -13.98016 -13.41484 -13.22597 -13.01912 -12.89631 -12.68688 -12.57475 -12.54687 -12.35881 -12.27288 -12.08951 -11.92993 -11.85328 -11.63490 -11.32848 -10.89884 -10.83692 -10.69529 -10.05805 -9.75474 -9.47558 -8.31880 -6.40978 -0.38171 -0.14234 0.73143 1.09986 1.38819 1.44146 1.52396 1.69542 2.08439 2.33073 2.45336 2.92003 3.00448 3.37448 3.79125 3.83890 3.85137 3.99878 4.11081 4.14649 4.23445 4.31240 4.41527 4.56655 4.74848 4.75792 4.79487 4.82898 4.90790 5.00113 5.06337 5.20970 5.23820 5.26264 5.36623 5.49446 5.65471 6.11466 6.55062 6.66384 7.12061 7.26643 8.83426 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.009774 B = 0.006182 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.003107 B = 4528.550478 C = 6785.622320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.033 3.967 3 Si 0.920 3.080 4 H -0.239 1.239 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.542 4.542 8 H 0.035 0.965 9 C 0.188 3.812 10 N -0.582 5.582 11 C 0.151 3.849 12 C -0.183 4.183 13 C -0.173 4.173 14 C -0.154 4.154 15 C 0.551 3.449 16 O -0.561 6.561 17 C -0.133 4.133 18 C -0.095 4.095 19 C -0.109 4.109 20 C -0.062 4.062 21 C -0.052 4.052 22 Cl -0.039 7.039 23 C 0.000 4.000 24 Cl -0.038 7.038 25 H 0.271 0.729 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.169 0.831 36 H 0.171 0.829 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.332 1.505 -5.324 14.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.168 4.168 3 Si 0.741 3.259 4 H -0.162 1.162 5 H -0.211 1.211 6 H -0.170 1.170 7 C -0.580 4.580 8 H 0.053 0.947 9 C 0.067 3.933 10 N -0.311 5.311 11 C 0.028 3.972 12 C -0.202 4.202 13 C -0.210 4.210 14 C -0.192 4.192 15 C 0.340 3.660 16 O -0.441 6.441 17 C -0.137 4.137 18 C -0.113 4.113 19 C -0.127 4.127 20 C -0.080 4.080 21 C -0.079 4.079 22 Cl -0.010 7.010 23 C -0.029 4.029 24 Cl -0.008 7.008 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.186 0.814 36 H 0.189 0.811 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 13.540 0.848 -5.372 14.591 hybrid contribution -0.184 0.313 0.263 0.448 sum 13.355 1.161 -5.109 14.346 Atomic orbital electron populations 1.70028 1.08282 1.28647 1.49994 1.25674 0.95304 1.02577 0.93244 0.86123 0.79746 0.78870 0.81125 1.16221 1.21110 1.17002 1.21313 0.90488 0.93572 1.52620 0.94689 1.20500 0.93553 0.79569 0.99659 1.47729 1.58098 1.15142 1.10105 1.20901 0.97151 0.95122 0.83999 1.22599 0.99434 0.97907 1.00237 1.23005 0.96717 0.98371 1.02857 1.23018 1.02206 1.02765 0.91193 1.18284 0.77620 0.86965 0.83157 1.90713 1.53581 1.16307 1.83510 1.19755 0.97118 0.99546 0.97236 1.22678 0.99423 0.91779 0.97437 1.21598 0.97966 1.00302 0.92880 1.21620 0.91488 0.94585 1.00333 1.20743 0.94373 0.99169 0.93638 1.98375 1.41454 1.95969 1.65233 1.20864 0.93414 0.92983 0.95616 1.98385 1.60149 1.47921 1.94384 0.91929 0.94826 0.90851 0.90680 0.91073 0.88315 0.89602 0.88125 0.86930 0.88138 0.81442 0.81149 0.79923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.95 13.96 21.45 0.30 -51.65 16 2 C 0.03 1.66 5.47 84.66 0.46 2.12 16 3 Si 0.92 36.40 27.47 68.60 1.88 38.29 16 4 H -0.24 -8.34 7.11 99.48 0.71 -7.63 16 5 H -0.29 -11.55 7.11 99.48 0.71 -10.85 16 6 H -0.25 -9.13 6.54 99.48 0.65 -8.48 16 7 C -0.54 -27.33 8.10 25.60 0.21 -27.12 16 8 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 9 C 0.19 7.93 3.79 85.63 0.32 8.26 16 10 N -0.58 -24.01 2.51 -829.67 -2.08 -26.08 16 11 C 0.15 5.69 5.73 86.38 0.50 6.19 16 12 C -0.18 -5.73 6.01 -10.79 -0.06 -5.79 16 13 C -0.17 -4.73 10.18 30.62 0.31 -4.41 16 14 C -0.15 -3.80 10.26 30.62 0.31 -3.49 16 15 C 0.55 23.02 7.16 86.76 0.62 23.64 16 16 O -0.56 -25.15 14.49 -3.91 -0.06 -25.21 16 17 C -0.13 -4.88 5.51 -20.07 -0.11 -4.99 16 18 C -0.10 -3.23 7.42 22.53 0.17 -3.07 16 19 C -0.11 -2.76 10.03 22.23 0.22 -2.54 16 20 C -0.06 -1.34 9.82 22.34 0.22 -1.12 16 21 C -0.05 -1.37 6.32 22.31 0.14 -1.23 16 22 Cl -0.04 -0.90 27.95 -2.72 -0.08 -0.98 16 23 C 0.00 0.00 6.34 22.62 0.14 0.14 16 24 Cl -0.04 -1.26 25.64 -2.72 -0.07 -1.33 16 25 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 26 H 0.03 1.40 7.20 -2.39 -0.02 1.38 16 27 H 0.07 2.90 3.11 -3.25 -0.01 2.89 16 28 H 0.07 2.97 7.86 -2.39 -0.02 2.95 16 29 H 0.07 2.77 6.95 -2.39 -0.02 2.75 16 30 H 0.10 3.17 8.14 -2.38 -0.02 3.15 16 31 H 0.09 2.52 8.04 -2.38 -0.02 2.50 16 32 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.17 6.64 4.07 -2.91 -0.01 6.62 16 36 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.18 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -61.26 337.18 4.41 -56.85 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 1.05 Total: 23.52 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 3.46 Total: -13.40 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -1.78 Total: -77.74 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.06 Total: -25.21 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 1.88 Total: 38.29 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.15 Total: -2.31 kcal Total: -61.26 4.41 -56.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349399346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.738 kcal (2) G-P(sol) polarization free energy of solvation -61.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds