Wall clock time and date at job start Tue Mar 31 2020 14:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 120.00026 * 2 1 4 4 H 1.48504 * 109.47136 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47157 * 299.99628 * 3 2 1 6 6 H 1.48493 * 109.47245 * 59.99697 * 3 2 1 7 7 C 1.37879 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00124 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99924 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47061 * 59.99274 * 9 7 2 11 11 O 1.42903 * 109.46991 * 299.99555 * 9 7 2 12 12 C 1.53001 * 109.47023 * 179.97438 * 9 7 2 13 13 S 1.81407 * 109.46694 * 184.99765 * 12 9 7 14 14 C 1.76205 * 102.99655 * 180.02562 * 13 12 9 15 15 N 1.28331 * 124.85663 * 359.97300 * 14 13 12 16 16 N 1.37813 * 116.35009 * 180.02562 * 15 14 13 17 17 H 0.96995 * 122.91239 * 180.02562 * 16 15 14 18 18 C 1.35361 * 114.16336 * 0.02562 * 16 15 14 19 19 N 1.31130 * 125.74302 * 180.02562 * 18 16 15 20 20 C 1.46501 * 120.00419 * 179.97438 * 19 18 16 21 21 C 1.50697 * 109.46932 * 119.99829 * 20 19 18 22 22 C 1.34511 * 125.79278 * 90.00211 * 21 20 19 23 23 C 1.41386 * 106.84141 * 180.02562 * 22 21 20 24 24 C 1.34507 * 106.84010 * 0.02562 * 23 22 21 25 25 O 1.34304 * 108.42311 * 359.97438 * 24 23 22 26 26 S 1.75875 * 124.85912 * 180.30597 * 14 13 12 27 27 H 0.97003 * 119.99679 * 0.02562 * 1 2 3 28 28 H 0.96703 * 114.00319 * 300.00183 * 11 9 7 29 29 H 1.09000 * 109.47027 * 65.00029 * 12 9 7 30 30 H 1.08996 * 109.46677 * 304.99602 * 12 9 7 31 31 H 1.08994 * 109.46907 * 359.97438 * 20 19 18 32 32 H 1.09003 * 109.47040 * 239.99348 * 20 19 18 33 33 H 1.08000 * 126.57995 * 0.05173 * 22 21 20 34 34 H 1.08004 * 126.57483 * 179.97438 * 23 22 21 35 35 H 1.08004 * 125.79019 * 180.26381 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 8 0.4292 -2.5746 1.1671 12 6 2.2453 -3.6621 0.0005 13 16 1.3432 -5.2289 -0.1485 14 6 2.6312 -6.4311 -0.1304 15 7 3.8825 -6.1639 -0.0321 16 7 4.7405 -7.2425 -0.0363 17 1 5.7035 -7.1501 0.0333 18 6 4.1224 -8.4417 -0.1459 19 7 4.7168 -9.6103 -0.1723 20 6 3.9212 -10.8343 -0.2947 21 6 4.3249 -11.5729 -1.5446 22 6 5.2902 -12.5057 -1.6301 23 6 5.3313 -12.9303 -2.9781 24 6 4.3890 -12.2312 -3.6358 25 8 3.7824 -11.4107 -2.7625 26 16 2.3865 -8.1684 -0.2528 27 1 -0.4850 0.8401 -0.0004 28 1 0.9210 -2.5291 1.9985 29 1 2.8116 -3.6560 0.9319 30 1 2.9294 -3.5552 -0.8413 31 1 2.8637 -10.5762 -0.3502 32 1 4.0948 -11.4689 0.5744 33 1 5.9140 -12.8622 -0.8238 34 1 5.9930 -13.6729 -3.3990 35 1 4.1561 -12.3186 -4.6868 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352165378.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:18 Heat of formation + Delta-G solvation = 39.958456 kcal Electronic energy + Delta-G solvation = -21255.771705 eV Core-core repulsion = 17702.660342 eV Total energy + Delta-G solvation = -3553.111364 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.74778 -39.85098 -36.15808 -36.06263 -33.25958 -32.29730 -32.28018 -30.14897 -29.80452 -26.55039 -25.48158 -24.03626 -22.48751 -21.95833 -21.14667 -20.75567 -19.10931 -17.66415 -17.43423 -17.33070 -16.40909 -16.32744 -15.63939 -15.20721 -14.82373 -14.74662 -14.50778 -14.32707 -14.00971 -13.83837 -13.07420 -13.01990 -12.84576 -12.62391 -12.20351 -12.09485 -11.52116 -11.37278 -11.05119 -11.00163 -10.72505 -10.39448 -10.14922 -10.12588 -10.05662 -9.74922 -9.33449 -8.73531 -8.72444 -8.44743 -8.21691 -7.44360 -6.16921 -4.37297 0.54257 1.02756 1.09266 1.28743 1.47834 1.78849 2.36433 2.50951 2.75767 2.87198 3.19262 3.28261 3.31291 4.27821 4.33150 4.48866 4.66126 4.80426 4.91706 5.10293 5.10677 5.22310 5.56392 5.65438 5.69373 5.82675 5.84424 6.05236 6.26291 6.49816 6.62441 6.89043 6.95921 7.40287 7.53169 7.66476 7.90927 8.63979 9.16352 9.39174 10.87041 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.032045 B = 0.002174 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.548891 B =12876.861717 C =13037.306069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.081 3.919 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.569 4.569 8 H 0.061 0.939 9 C 0.245 3.755 10 H 0.069 0.931 11 O -0.558 6.558 12 C -0.122 4.122 13 S 0.030 5.970 14 C 0.051 3.949 15 N -0.233 5.233 16 N -0.512 5.512 17 H 0.447 0.553 18 C 0.355 3.645 19 N -0.566 5.566 20 C 0.151 3.849 21 C -0.008 4.008 22 C -0.191 4.191 23 C -0.217 4.217 24 C -0.039 4.039 25 O -0.175 6.175 26 S 0.026 5.974 27 H 0.263 0.737 28 H 0.350 0.650 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.339 -21.828 -2.172 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.609 4.609 8 H 0.080 0.920 9 C 0.184 3.816 10 H 0.087 0.913 11 O -0.361 6.361 12 C -0.273 4.273 13 S 0.259 5.741 14 C -0.356 4.356 15 N -0.054 5.054 16 N -0.246 5.246 17 H 0.294 0.706 18 C -0.034 4.034 19 N -0.303 5.303 20 C 0.020 3.980 21 C -0.059 4.059 22 C -0.211 4.211 23 C -0.236 4.236 24 C -0.107 4.107 25 O -0.070 6.070 26 S 0.253 5.747 27 H 0.073 0.927 28 H 0.194 0.806 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.134 0.866 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 5.752 -22.213 -2.770 23.112 hybrid contribution 2.954 1.174 0.353 3.198 sum 8.706 -21.038 -2.416 22.896 Atomic orbital electron populations 1.70082 1.05952 1.26807 1.46081 1.25040 0.94797 0.99294 0.93514 0.86504 0.80142 0.83266 0.77845 1.19598 1.20713 1.20728 1.21487 0.93325 0.90233 1.55894 0.92045 1.19263 0.87504 0.87652 0.87145 0.91296 1.86605 1.38150 1.96021 1.15342 1.25123 1.03659 0.92579 1.05895 1.86328 1.02573 0.96846 1.88377 1.29662 0.98805 1.02166 1.05001 1.74361 1.00166 1.10141 1.20706 1.45646 1.09876 0.97850 1.71262 0.70574 1.25542 0.91495 0.91432 0.94927 1.72071 1.30620 0.94859 1.32738 1.20316 0.95301 0.90721 0.91700 1.22226 0.98110 1.00281 0.85328 1.21569 1.00862 1.00761 0.97904 1.21843 1.02785 1.04733 0.94278 1.24067 0.96800 0.94246 0.95580 1.84045 1.52812 1.52671 1.17499 1.86074 1.05295 0.99747 1.83561 0.92692 0.80588 0.89524 0.88883 0.92013 0.86641 0.83391 0.83433 0.78114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.87 12.84 55.43 0.71 -23.16 16 2 C 0.08 2.14 5.40 -17.82 -0.10 2.04 16 3 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.57 -14.48 8.76 -34.44 -0.30 -14.79 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.24 5.65 2.82 -27.88 -0.08 5.57 16 10 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 11 O -0.56 -13.12 12.49 -35.23 -0.44 -13.56 16 12 C -0.12 -2.28 5.11 37.16 0.19 -2.09 16 13 S 0.03 0.50 21.94 -107.50 -2.36 -1.86 16 14 C 0.05 0.77 7.73 51.30 0.40 1.17 16 15 N -0.23 -3.54 11.46 30.87 0.35 -3.18 16 16 N -0.51 -6.75 6.92 30.38 0.21 -6.54 16 17 H 0.45 4.86 8.96 -184.29 -1.65 3.21 16 18 C 0.36 4.73 8.42 -89.56 -0.75 3.97 16 19 N -0.57 -7.29 10.65 -62.62 -0.67 -7.96 16 20 C 0.15 1.64 6.88 -5.19 -0.04 1.60 16 21 C -0.01 -0.10 6.90 -35.63 -0.25 -0.34 16 22 C -0.19 -1.97 10.81 -39.70 -0.43 -2.40 16 23 C -0.22 -2.00 10.91 -39.70 -0.43 -2.43 16 24 C -0.04 -0.36 12.09 29.41 0.36 -0.01 16 25 O -0.17 -2.13 10.65 5.70 0.06 -2.07 16 26 S 0.03 0.34 21.46 -107.50 -2.31 -1.97 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.35 7.20 9.04 45.56 0.41 7.61 16 29 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 30 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.06 0.66 6.23 -51.93 -0.32 0.33 16 32 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.20 1.10 8.06 -52.48 -0.42 0.67 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -30.04 342.12 -9.80 -39.84 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -4.06 Total: 7.89 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.43 Total: -7.71 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.61 Total: -40.84 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.38 Total: -15.63 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -4.67 Total: -3.82 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.04 -9.80 -39.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352165378.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.800 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds