Wall clock time and date at job start Tue Mar 31 2020 14:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 120.00026 * 2 1 4 4 H 1.48504 * 109.47136 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47157 * 299.99628 * 3 2 1 6 6 H 1.48493 * 109.47245 * 59.99697 * 3 2 1 7 7 C 1.37879 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00124 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99924 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47061 * 59.99274 * 9 7 2 11 11 O 1.42903 * 109.46991 * 299.99555 * 9 7 2 12 12 C 1.53001 * 109.47023 * 179.97438 * 9 7 2 13 13 S 1.81407 * 109.46694 * 184.99765 * 12 9 7 14 14 C 1.76205 * 102.99655 * 180.02562 * 13 12 9 15 15 N 1.28331 * 124.85663 * 359.97300 * 14 13 12 16 16 N 1.37813 * 116.35009 * 180.02562 * 15 14 13 17 17 H 0.96995 * 122.91239 * 180.02562 * 16 15 14 18 18 C 1.35361 * 114.16336 * 0.02562 * 16 15 14 19 19 N 1.31130 * 125.74302 * 180.02562 * 18 16 15 20 20 C 1.46501 * 120.00419 * 179.97438 * 19 18 16 21 21 C 1.50697 * 109.46932 * 119.99829 * 20 19 18 22 22 C 1.34511 * 125.79278 * 90.00211 * 21 20 19 23 23 C 1.41386 * 106.84141 * 180.02562 * 22 21 20 24 24 C 1.34507 * 106.84010 * 0.02562 * 23 22 21 25 25 O 1.34304 * 108.42311 * 359.97438 * 24 23 22 26 26 S 1.75875 * 124.85912 * 180.30597 * 14 13 12 27 27 H 0.97003 * 119.99679 * 0.02562 * 1 2 3 28 28 H 0.96703 * 114.00319 * 300.00183 * 11 9 7 29 29 H 1.09000 * 109.47027 * 65.00029 * 12 9 7 30 30 H 1.08996 * 109.46677 * 304.99602 * 12 9 7 31 31 H 1.08994 * 109.46907 * 359.97438 * 20 19 18 32 32 H 1.09003 * 109.47040 * 239.99348 * 20 19 18 33 33 H 1.08000 * 126.57995 * 0.05173 * 22 21 20 34 34 H 1.08004 * 126.57483 * 179.97438 * 23 22 21 35 35 H 1.08004 * 125.79019 * 180.26381 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 8 0.4292 -2.5746 1.1671 12 6 2.2453 -3.6621 0.0005 13 16 1.3432 -5.2289 -0.1485 14 6 2.6312 -6.4311 -0.1304 15 7 3.8825 -6.1639 -0.0321 16 7 4.7405 -7.2425 -0.0363 17 1 5.7035 -7.1501 0.0333 18 6 4.1224 -8.4417 -0.1459 19 7 4.7168 -9.6103 -0.1723 20 6 3.9212 -10.8343 -0.2947 21 6 4.3249 -11.5729 -1.5446 22 6 5.2902 -12.5057 -1.6301 23 6 5.3313 -12.9303 -2.9781 24 6 4.3890 -12.2312 -3.6358 25 8 3.7824 -11.4107 -2.7625 26 16 2.3865 -8.1684 -0.2528 27 1 -0.4850 0.8401 -0.0004 28 1 0.9210 -2.5291 1.9985 29 1 2.8116 -3.6560 0.9319 30 1 2.9294 -3.5552 -0.8413 31 1 2.8637 -10.5762 -0.3502 32 1 4.0948 -11.4689 0.5744 33 1 5.9140 -12.8622 -0.8238 34 1 5.9930 -13.6729 -3.3990 35 1 4.1561 -12.3186 -4.6868 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352165378.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:17 Heat of formation + Delta-G solvation = 18.266377 kcal Electronic energy + Delta-G solvation = -21256.712344 eV Core-core repulsion = 17702.660342 eV Total energy + Delta-G solvation = -3554.052003 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.51225 -40.94951 -37.90115 -37.13912 -34.27546 -34.05781 -33.27126 -31.61555 -30.95201 -27.46869 -27.35272 -25.05774 -23.70598 -22.85020 -22.67993 -21.54248 -20.18522 -19.25248 -18.58105 -18.28532 -17.66955 -17.22357 -16.73671 -16.67252 -16.31485 -16.16123 -15.91126 -15.61659 -15.33763 -14.95613 -14.30301 -13.97835 -13.76779 -13.62300 -13.52721 -13.28557 -13.01645 -12.88898 -12.81136 -12.69440 -12.07289 -11.90407 -11.64731 -11.18804 -11.13519 -10.91354 -10.72453 -10.70583 -10.30310 -9.51035 -9.29106 -8.66709 -8.15938 -6.41990 -0.57723 -0.06597 -0.03902 0.13225 0.58158 0.83159 1.13035 1.42299 1.45457 1.56041 1.58885 1.79234 2.08784 2.40332 3.11221 3.32871 3.73839 3.79690 4.08052 4.08989 4.12635 4.19397 4.28994 4.30125 4.43949 4.87106 4.91261 4.99062 5.14059 5.52225 5.57693 5.66823 5.68119 5.86951 5.97503 6.16437 6.49858 6.67459 7.30896 7.48866 8.88529 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.032045 B = 0.002174 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.548891 B =12876.861717 C =13037.306069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.030 3.970 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.579 4.579 8 H 0.065 0.935 9 C 0.246 3.754 10 H 0.038 0.962 11 O -0.572 6.572 12 C -0.111 4.111 13 S 0.035 5.965 14 C 0.037 3.963 15 N -0.240 5.240 16 N -0.507 5.507 17 H 0.456 0.544 18 C 0.344 3.656 19 N -0.566 5.566 20 C 0.147 3.853 21 C -0.037 4.037 22 C -0.193 4.193 23 C -0.226 4.226 24 C -0.042 4.042 25 O -0.199 6.199 26 S 0.053 5.947 27 H 0.263 0.737 28 H 0.362 0.638 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.139 0.861 33 H 0.162 0.838 34 H 0.172 0.828 35 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.881 -23.301 -2.350 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.174 4.174 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.619 4.619 8 H 0.083 0.917 9 C 0.186 3.814 10 H 0.056 0.944 11 O -0.376 6.376 12 C -0.261 4.261 13 S 0.263 5.737 14 C -0.371 4.371 15 N -0.061 5.061 16 N -0.244 5.244 17 H 0.305 0.695 18 C -0.045 4.045 19 N -0.303 5.303 20 C 0.017 3.983 21 C -0.088 4.088 22 C -0.213 4.213 23 C -0.245 4.245 24 C -0.109 4.109 25 O -0.096 6.096 26 S 0.280 5.720 27 H 0.072 0.928 28 H 0.207 0.793 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.157 0.843 33 H 0.180 0.820 34 H 0.189 0.811 35 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 7.327 -23.703 -2.940 24.983 hybrid contribution 2.557 1.394 0.369 2.936 sum 9.885 -22.309 -2.572 24.536 Atomic orbital electron populations 1.70204 1.07525 1.27575 1.47806 1.25857 0.95501 1.02772 0.93274 0.85483 0.79126 0.79140 0.77664 1.18760 1.20605 1.20543 1.21880 0.93688 0.91515 1.54803 0.91675 1.18991 0.87442 0.88983 0.86028 0.94379 1.86545 1.38889 1.96166 1.16030 1.24633 1.02378 0.92858 1.06241 1.86213 1.02442 0.95836 1.89206 1.29448 0.98602 1.03062 1.05957 1.74297 1.00431 1.11400 1.19952 1.45585 1.10116 0.97474 1.71190 0.69498 1.25603 0.91633 0.91548 0.95734 1.72048 1.31446 0.95298 1.31492 1.20496 0.95003 0.90151 0.92675 1.22377 0.99340 1.01551 0.85497 1.21908 1.00294 1.00089 0.98983 1.22213 1.03209 1.05250 0.93860 1.24836 0.96215 0.93207 0.96656 1.84027 1.53715 1.53716 1.18115 1.85957 1.05297 0.97472 1.83276 0.92758 0.79277 0.88842 0.88925 0.92003 0.84348 0.81999 0.81064 0.74930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.82 12.84 21.45 0.28 -50.55 16 2 C 0.03 1.56 5.40 84.65 0.46 2.02 16 3 Si 0.96 41.36 29.54 68.60 2.03 43.39 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.58 -29.60 8.76 25.60 0.22 -29.37 16 8 H 0.07 3.21 7.74 -2.92 -0.02 3.18 16 9 C 0.25 11.53 2.82 29.85 0.08 11.61 16 10 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 11 O -0.57 -27.23 12.49 -148.98 -1.86 -29.09 16 12 C -0.11 -4.12 5.11 71.98 0.37 -3.75 16 13 S 0.04 1.15 21.94 -56.49 -1.24 -0.09 16 14 C 0.04 1.08 7.73 130.75 1.01 2.09 16 15 N -0.24 -7.02 11.46 -56.24 -0.64 -7.67 16 16 N -0.51 -12.71 6.92 -57.79 -0.40 -13.11 16 17 H 0.46 9.32 8.96 -214.77 -1.93 7.40 16 18 C 0.34 8.69 8.42 179.98 1.52 10.20 16 19 N -0.57 -13.72 10.65 -352.03 -3.75 -17.47 16 20 C 0.15 2.98 6.88 85.63 0.59 3.57 16 21 C -0.04 -0.82 6.90 24.83 0.17 -0.65 16 22 C -0.19 -3.63 10.81 22.19 0.24 -3.39 16 23 C -0.23 -3.66 10.91 22.19 0.24 -3.41 16 24 C -0.04 -0.70 12.09 66.97 0.81 0.11 16 25 O -0.20 -4.62 10.65 -2.51 -0.03 -4.65 16 26 S 0.05 1.33 21.46 -56.49 -1.21 0.11 16 27 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 28 H 0.36 14.97 9.04 -74.06 -0.67 14.30 16 29 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 30 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 31 H 0.06 1.24 6.23 -2.39 -0.01 1.22 16 32 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 35 H 0.23 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -63.78 342.12 -2.55 -66.33 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -1.43 Total: 23.76 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 5.71 Total: -10.97 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -4.52 Total: -88.79 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -1.89 Total: -33.74 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.45 Total: 0.02 kcal Total: -63.78 -2.55 -66.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352165378.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.597 kcal (2) G-P(sol) polarization free energy of solvation -63.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds