Wall clock time and date at job start Tue Mar 31 2020 15:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31362 * 1 3 3 Si 1.86804 * 119.99844 * 2 1 4 4 H 1.48499 * 109.46759 * 239.99826 * 3 2 1 5 5 H 1.48496 * 109.47307 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46806 * 119.99944 * 3 2 1 7 7 C 1.39043 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99843 * 180.02562 * 7 2 1 9 9 N 1.36865 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00432 * 180.02562 * 9 7 2 11 11 O 1.21590 * 119.99568 * 0.02562 * 10 9 7 12 12 C 1.47738 * 120.00411 * 180.02562 * 10 9 7 13 13 C 1.39738 * 120.09086 * 359.97438 * 12 10 9 14 14 C 1.37993 * 120.08755 * 179.97438 * 13 12 10 15 15 C 1.38181 * 120.27874 * 0.02982 * 14 13 12 16 16 C 1.39431 * 120.18405 * 359.74017 * 15 14 13 17 17 C 1.48435 * 120.04698 * 180.26359 * 16 15 14 18 18 N 1.30755 * 126.41527 * 180.25605 * 17 16 15 19 19 O 1.21289 * 110.10075 * 179.97438 * 18 17 16 20 20 C 1.33668 * 110.02762 * 359.97438 * 19 18 17 21 21 C 1.50696 * 126.44261 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47333 * 269.97970 * 21 20 19 23 23 F 1.39902 * 109.46971 * 29.98475 * 21 20 19 24 24 F 1.39901 * 109.46979 * 149.97682 * 21 20 19 25 25 N 1.30982 * 107.11877 * 359.73215 * 20 19 18 26 26 C 1.39064 * 119.90798 * 0.48825 * 16 15 14 27 27 H 0.97003 * 119.99706 * 0.02562 * 1 2 3 28 28 H 0.97006 * 120.00157 * 0.02562 * 9 7 2 29 29 H 1.08000 * 119.95205 * 0.02587 * 13 12 10 30 30 H 1.07994 * 119.86404 * 180.02562 * 14 13 12 31 31 H 1.08006 * 119.90738 * 180.02562 * 15 14 13 32 32 H 1.08002 * 120.14065 * 179.79710 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.1013 1.6964 -1.2125 5 1 1.2826 2.7465 0.0006 6 1 3.1013 1.6964 1.2125 7 6 2.0088 -1.2042 -0.0005 8 1 3.0889 -1.2042 -0.0001 9 7 1.3245 -2.3895 -0.0005 10 6 1.9983 -3.5567 -0.0005 11 8 3.2142 -3.5567 -0.0001 12 6 1.2597 -4.8362 -0.0011 13 6 -0.1377 -4.8384 -0.0011 14 6 -0.8276 -6.0335 -0.0022 15 6 -0.1424 -7.2335 -0.0026 16 6 1.2518 -7.2447 -0.0075 17 6 1.9847 -8.5355 -0.0139 18 7 3.2830 -8.6909 -0.0141 19 8 3.5615 -9.8714 -0.0196 20 6 2.4443 -10.6053 -0.0230 21 6 2.3616 -12.1100 -0.0305 22 9 2.3352 -12.5690 -1.3518 23 9 3.4770 -12.6415 0.6257 24 9 1.1960 -12.5163 0.6278 25 7 1.4347 -9.7708 -0.0132 26 6 1.9549 -6.0449 -0.0016 27 1 -0.4850 0.8401 -0.0004 28 1 0.3544 -2.3895 -0.0005 29 1 -0.6784 -3.9035 -0.0011 30 1 -1.9075 -6.0310 -0.0026 31 1 -0.6885 -8.1654 -0.0039 32 1 3.0349 -6.0491 -0.0020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354924685.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:10 Heat of formation + Delta-G solvation = -100.516956 kcal Electronic energy + Delta-G solvation = -25899.613907 eV Core-core repulsion = 21220.357510 eV Total energy + Delta-G solvation = -4679.256397 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.062 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.58515 -49.08671 -49.08157 -47.28088 -41.04185 -39.36360 -37.46355 -36.19767 -34.88018 -33.57155 -32.18967 -31.95005 -28.83600 -27.39856 -26.35152 -24.81657 -24.36025 -22.78700 -21.49786 -20.48908 -20.35674 -20.17644 -19.75980 -19.32893 -18.50637 -18.27770 -17.34954 -16.74575 -16.33255 -16.07251 -15.86541 -15.83198 -15.65929 -15.46880 -15.43464 -15.15627 -15.14789 -14.74706 -14.65090 -14.57379 -14.30644 -14.00405 -13.59452 -13.30701 -13.01028 -12.98159 -12.82774 -12.49014 -12.31828 -12.14383 -12.13935 -11.64285 -10.62563 -10.21342 -10.06853 -9.94989 -8.60708 -6.05432 -0.81771 -0.39494 -0.07152 0.16360 0.91529 1.38677 1.39842 1.40349 1.50986 1.83115 1.99627 2.22373 2.26938 2.72389 2.81037 2.84086 2.86490 3.09314 3.22214 3.67156 3.82257 3.87627 4.04727 4.14405 4.23220 4.38534 4.62796 4.83492 5.15293 5.25264 5.28760 5.31309 5.68323 5.87538 6.43822 6.44710 6.96799 7.35699 7.92950 8.55958 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.034498 B = 0.002284 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.448380 B =12254.922790 C =12891.836810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.005 4.005 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.264 1.264 6 H -0.270 1.270 7 C -0.340 4.340 8 H 0.082 0.918 9 N -0.544 5.544 10 C 0.459 3.541 11 O -0.641 6.641 12 C -0.122 4.122 13 C -0.073 4.073 14 C -0.104 4.104 15 C -0.050 4.050 16 C -0.051 4.051 17 C 0.224 3.776 18 N -0.368 5.368 19 O 0.139 5.861 20 C 0.088 3.912 21 C 0.605 3.395 22 F -0.142 7.142 23 F -0.142 7.142 24 F -0.136 7.136 25 N -0.410 5.410 26 C -0.048 4.048 27 H 0.285 0.715 28 H 0.401 0.599 29 H 0.140 0.860 30 H 0.182 0.818 31 H 0.167 0.833 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.300 -23.946 -0.045 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.207 4.207 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.188 1.188 6 H -0.196 1.196 7 C -0.470 4.470 8 H 0.100 0.900 9 N -0.179 5.179 10 C 0.248 3.752 11 O -0.531 6.531 12 C -0.125 4.125 13 C -0.093 4.093 14 C -0.121 4.121 15 C -0.070 4.070 16 C -0.053 4.053 17 C -0.045 4.045 18 N -0.064 5.064 19 O 0.069 5.931 20 C -0.136 4.136 21 C 0.548 3.452 22 F -0.123 7.123 23 F -0.123 7.123 24 F -0.117 7.117 25 N -0.144 5.144 26 C -0.069 4.069 27 H 0.095 0.905 28 H 0.237 0.763 29 H 0.158 0.842 30 H 0.199 0.801 31 H 0.185 0.815 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.534 -22.958 -0.033 23.229 hybrid contribution 0.448 0.750 -0.006 0.873 sum -3.087 -22.208 -0.039 22.422 Atomic orbital electron populations 1.69610 1.06899 1.30206 1.47654 1.26159 0.96647 1.02584 0.95296 0.84921 0.77887 0.76029 0.79142 1.19546 1.18834 1.19558 1.19752 0.93110 0.83741 1.50371 0.89952 1.41836 1.09682 1.04508 1.61835 1.18414 0.87287 0.84595 0.84885 1.90562 1.15434 1.87908 1.59161 1.19900 0.94881 0.92426 1.05306 1.21812 0.91798 1.00819 0.94846 1.21458 1.02362 0.89658 0.98619 1.21605 0.90737 1.00602 0.94085 1.17224 0.93743 0.85386 1.08898 1.24011 0.86054 0.93624 1.00792 1.75042 1.17266 0.95110 1.18982 1.85422 1.33341 1.11117 1.63217 1.28767 0.82780 0.98327 1.03738 1.15573 0.75562 0.78496 0.75566 1.93364 1.96104 1.88720 1.34153 1.93363 1.51707 1.86461 1.80740 1.93358 1.47737 1.90055 1.80582 1.71873 1.28745 0.98275 1.15486 1.20981 1.00004 0.90436 0.95529 0.90527 0.76328 0.84239 0.80063 0.81513 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.76 13.05 21.68 0.28 -46.47 16 2 C 0.00 -0.25 5.50 84.96 0.47 0.22 16 3 Si 1.00 41.59 29.55 68.60 2.03 43.62 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.34 -19.30 9.68 84.10 0.81 -18.49 16 8 H 0.08 4.99 7.15 -2.91 -0.02 4.96 16 9 N -0.54 -28.44 5.23 -309.72 -1.62 -30.06 16 10 C 0.46 23.57 7.72 86.75 0.67 24.24 16 11 O -0.64 -38.17 15.91 -4.00 -0.06 -38.23 16 12 C -0.12 -4.84 5.87 -20.12 -0.12 -4.96 16 13 C -0.07 -2.21 9.54 22.57 0.22 -2.00 16 14 C -0.10 -2.24 10.02 22.20 0.22 -2.02 16 15 C -0.05 -1.13 9.70 22.54 0.22 -0.91 16 16 C -0.05 -1.49 5.87 -20.07 -0.12 -1.61 16 17 C 0.22 6.23 7.80 137.30 1.07 7.30 16 18 N -0.37 -10.67 11.85 -59.14 -0.70 -11.37 16 19 O 0.14 3.16 11.29 74.62 0.84 4.00 16 20 C 0.09 1.69 7.68 88.35 0.68 2.36 16 21 C 0.61 7.93 3.57 71.23 0.25 8.19 16 22 F -0.14 -1.81 17.30 44.97 0.78 -1.03 16 23 F -0.14 -1.70 17.30 44.97 0.78 -0.92 16 24 F -0.14 -1.81 17.26 44.97 0.78 -1.03 16 25 N -0.41 -9.36 11.20 -302.51 -3.39 -12.75 16 26 C -0.05 -1.78 9.24 22.76 0.21 -1.57 16 27 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 28 H 0.40 19.21 5.92 -92.70 -0.55 18.66 16 29 H 0.14 4.11 6.39 -2.91 -0.02 4.09 16 30 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 31 H 0.17 2.75 7.87 -2.91 -0.02 2.73 16 32 H 0.11 4.81 7.45 -2.91 -0.02 4.78 16 Total: -1.00 -68.56 314.58 4.99 -63.56 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.69 Total: 19.93 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 4.59 Total: 10.76 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -5.42 Total: -100.65 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: 0.78 Total: -34.23 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 2.33 Total: -2.99 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -68.56 4.99 -63.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354924685.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.953 kcal (2) G-P(sol) polarization free energy of solvation -68.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds