Wall clock time and date at job start Tue Mar 31 2020 14:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38430 * 122.53671 * 2 1 4 4 C 1.33387 * 114.91449 * 179.97438 * 3 2 1 5 5 S 1.75880 * 109.60051 * 359.75859 * 4 3 2 6 6 C 1.33385 * 122.53897 * 179.97438 * 2 1 3 7 7 S 1.76194 * 125.20533 * 0.02562 * 6 2 1 8 8 O 1.42094 * 106.40433 * 336.45443 * 7 6 2 9 9 O 1.42108 * 106.40281 * 203.53431 * 7 6 2 10 10 N 1.65602 * 107.21959 * 89.99856 * 7 6 2 11 11 C 1.39973 * 120.00293 * 64.99991 * 10 7 6 12 12 C 1.40440 * 125.97705 * 180.02562 * 11 10 7 13 13 C 1.35245 * 107.85969 * 179.69963 * 12 11 10 14 14 N 1.34957 * 107.86843 * 0.42548 * 13 12 11 15 15 C 1.46495 * 125.97696 * 179.83761 * 14 13 12 16 16 C 1.50702 * 109.47571 * 124.71669 * 15 14 13 17 17 H 1.08002 * 119.99446 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00072 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 179.72119 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72576 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72423 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72459 * 20 18 16 24 24 N 1.31227 * 125.97916 * 359.97287 * 11 10 7 25 25 H 1.09007 * 109.47060 * 270.02295 * 1 2 3 26 26 H 1.08992 * 109.46919 * 30.02411 * 1 2 3 27 27 H 1.08997 * 109.46902 * 150.02746 * 1 2 3 28 28 H 1.07993 * 122.54142 * 359.95592 * 3 2 1 29 29 H 1.08011 * 125.19372 * 179.97438 * 4 3 2 30 30 H 0.97004 * 119.99286 * 244.99779 * 10 7 6 31 31 H 1.08000 * 126.06758 * 0.02562 * 12 11 10 32 32 H 1.08007 * 126.06527 * 180.25438 * 13 12 11 33 33 H 1.09000 * 109.47378 * 4.71328 * 15 14 13 34 34 H 1.09001 * 109.47153 * 244.71449 * 15 14 13 35 35 H 0.96999 * 120.00128 * 180.27192 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9901 0.0005 5 16 3.9387 -0.7304 0.0081 6 6 2.2245 -1.1245 0.0005 7 16 1.5572 -2.7551 0.0006 8 8 0.2485 -2.6532 0.5446 9 8 2.5617 -3.5998 0.5455 10 7 1.3721 -3.2092 -1.5812 11 6 2.4960 -3.3643 -2.4010 12 6 2.4847 -3.7423 -3.7535 13 6 3.7657 -3.7723 -4.1864 14 7 4.5613 -3.4365 -3.1493 15 6 6.0232 -3.3483 -3.1795 16 6 6.4537 -1.9803 -2.7164 17 1 5.7123 -1.2496 -2.4288 18 6 7.7939 -1.6614 -2.6609 19 7 8.1693 -0.4658 -2.2620 20 14 9.0762 -2.9251 -3.1591 21 1 9.4766 -3.7193 -1.9698 22 1 8.5056 -3.8298 -4.1892 23 1 10.2658 -2.2310 -3.7141 24 7 3.7444 -3.1810 -2.0405 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5134 28 1 1.7965 2.1464 -0.0007 29 1 4.3078 1.7824 0.0002 30 1 0.4847 -3.3676 -1.9395 31 1 1.6084 -3.9641 -4.3444 32 1 4.0939 -4.0233 -5.1843 33 1 6.3764 -3.5152 -4.1971 34 1 6.4466 -4.1052 -2.5192 35 1 9.1120 -0.2400 -2.2267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356720438.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:47 Heat of formation + Delta-G solvation = 46.830869 kcal Electronic energy + Delta-G solvation = -23672.762763 eV Core-core repulsion = 20119.949410 eV Total energy + Delta-G solvation = -3552.813353 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.61777 -38.14767 -36.94502 -35.69250 -35.28217 -33.23544 -31.14031 -30.88686 -29.55511 -27.64469 -27.15891 -23.01801 -22.89527 -21.05016 -20.63276 -19.82824 -18.40935 -17.81315 -17.34548 -17.03811 -16.81065 -15.53354 -15.28392 -14.94219 -14.60898 -14.34443 -13.88736 -13.87327 -13.29129 -13.09201 -12.99970 -12.57107 -12.41038 -12.35181 -12.11275 -11.95509 -11.82163 -11.79504 -11.57435 -11.47363 -11.00909 -10.92787 -10.72615 -10.28516 -10.18815 -9.96037 -9.61049 -8.98545 -8.80635 -8.46009 -7.90142 -7.74950 -6.28462 -4.30037 0.45070 0.90938 1.93745 2.28636 2.56074 2.64233 2.87688 3.13573 3.17967 3.22149 3.25551 3.54059 3.89678 4.19563 4.71087 4.90437 4.97748 5.06218 5.25460 5.32755 5.45814 5.58396 5.68274 5.92522 6.01750 6.03981 6.12496 6.18827 6.33853 6.38833 6.52459 6.58967 6.87590 7.19923 7.28868 7.67509 8.24310 8.35526 8.82133 9.27318 10.83709 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.005492 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.307534 B = 5097.447407 C = 6265.401868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.028 3.972 3 C -0.175 4.175 4 C -0.193 4.193 5 S 0.334 5.666 6 C -0.819 4.819 7 S 2.722 3.278 8 O -0.956 6.956 9 O -0.931 6.931 10 N -1.014 6.014 11 C 0.278 3.722 12 C -0.301 4.301 13 C 0.069 3.931 14 N -0.312 5.312 15 C 0.228 3.772 16 C -0.535 4.535 17 H 0.093 0.907 18 C 0.079 3.921 19 N -0.887 5.887 20 Si 0.871 3.129 21 H -0.271 1.271 22 H -0.265 1.265 23 H -0.282 1.282 24 N -0.294 5.294 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.140 0.860 29 H 0.169 0.831 30 H 0.430 0.570 31 H 0.142 0.858 32 H 0.172 0.828 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.009 -0.665 -0.400 13.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.009 3.991 3 C -0.206 4.206 4 C -0.332 4.332 5 S 0.605 5.395 6 C -1.023 5.023 7 S 2.810 3.190 8 O -0.946 6.946 9 O -0.921 6.921 10 N -0.768 5.768 11 C 0.021 3.979 12 C -0.334 4.334 13 C -0.082 4.082 14 N -0.092 5.092 15 C 0.109 3.891 16 C -0.573 4.573 17 H 0.111 0.889 18 C -0.125 4.125 19 N -0.525 5.525 20 Si 0.697 3.303 21 H -0.196 1.196 22 H -0.190 1.190 23 H -0.207 1.207 24 N -0.124 5.124 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.187 0.813 30 H 0.266 0.734 31 H 0.160 0.840 32 H 0.189 0.811 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.511 -1.570 1.434 10.724 hybrid contribution -1.064 0.837 -1.590 2.088 sum -11.575 -0.733 -0.155 11.599 Atomic orbital electron populations 1.20907 0.89415 1.03340 1.03836 1.18541 0.96854 0.90642 0.93091 1.20075 0.92887 0.99052 1.08617 1.26495 1.00211 1.03190 1.03322 1.85488 0.96141 0.95184 1.62727 1.35365 1.10218 1.25144 1.31595 1.01106 0.73331 0.72867 0.71690 1.93581 1.38327 1.87325 1.75385 1.93637 1.59941 1.63601 1.74882 1.52633 1.11856 1.81727 1.30542 1.18706 0.86779 1.01483 0.90913 1.20856 0.97435 1.21068 0.94087 1.22424 0.90459 1.00530 0.94762 1.48631 1.07634 1.48091 1.04888 1.20150 0.69968 1.00192 0.98764 1.21145 0.93812 0.96476 1.45851 0.88908 1.24781 0.97964 0.95334 0.94430 1.69844 1.16826 1.19618 1.46166 0.86951 0.81930 0.81853 0.79578 1.19642 1.19019 1.20709 1.77492 0.97872 1.26798 1.10266 0.89593 0.90939 0.90514 0.84273 0.81335 0.73371 0.84008 0.81071 0.92743 0.94100 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 8.99 36.01 0.32 -1.10 16 2 C 0.03 0.43 5.80 -106.24 -0.62 -0.18 16 3 C -0.18 -2.55 9.98 -41.21 -0.41 -2.96 16 4 C -0.19 -3.12 11.23 29.04 0.33 -2.79 16 5 S 0.33 6.52 22.43 -107.50 -2.41 4.11 16 6 C -0.82 -14.41 6.50 29.04 0.19 -14.22 16 7 S 2.72 46.74 5.34 -107.50 -0.57 46.16 16 8 O -0.96 -15.70 15.22 -57.17 -0.87 -16.57 16 9 O -0.93 -19.40 17.12 -57.17 -0.98 -20.38 16 10 N -1.01 -15.35 5.91 31.39 0.19 -15.16 16 11 C 0.28 5.05 7.72 -154.55 -1.19 3.85 16 12 C -0.30 -4.71 10.83 -39.82 -0.43 -5.14 16 13 C 0.07 1.14 11.43 -17.24 -0.20 0.94 16 14 N -0.31 -6.48 3.67 -62.56 -0.23 -6.71 16 15 C 0.23 5.05 5.33 -5.20 -0.03 5.02 16 16 C -0.53 -13.97 9.79 -34.44 -0.34 -14.31 16 17 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 18 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 19 N -0.89 -25.02 13.96 55.43 0.77 -24.25 16 20 Si 0.87 19.39 27.47 -169.99 -4.67 14.72 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.27 -5.46 6.54 56.52 0.37 -5.09 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 N -0.29 -6.35 10.68 31.41 0.34 -6.01 16 25 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.08 0.92 6.22 -51.93 -0.32 0.60 16 28 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.17 2.38 8.06 -52.48 -0.42 1.96 16 30 H 0.43 4.66 8.96 -34.47 -0.31 4.35 16 31 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.17 2.11 8.06 -52.48 -0.42 1.69 16 33 H 0.05 1.09 7.12 -51.93 -0.37 0.72 16 34 H 0.04 0.91 7.57 -51.93 -0.39 0.52 16 35 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -33.10 330.34 -9.45 -42.55 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -3.52 Total: 5.46 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: -2.47 Total: -28.90 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 1.06 Total: -52.13 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -1.85 Total: -36.95 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.67 Total: 14.72 kcal Atomic # 16 Polarization: 53.26 SS G_CDS: -2.99 Total: 50.27 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.10 -9.45 -42.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356720438.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.384 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds