Wall clock time and date at job start Tue Mar 31 2020 14:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38430 * 122.53671 * 2 1 4 4 C 1.33387 * 114.91449 * 179.97438 * 3 2 1 5 5 S 1.75880 * 109.60051 * 359.75859 * 4 3 2 6 6 C 1.33385 * 122.53897 * 179.97438 * 2 1 3 7 7 S 1.76194 * 125.20533 * 0.02562 * 6 2 1 8 8 O 1.42094 * 106.40433 * 336.45443 * 7 6 2 9 9 O 1.42108 * 106.40281 * 203.53431 * 7 6 2 10 10 N 1.65602 * 107.21959 * 89.99856 * 7 6 2 11 11 C 1.39973 * 120.00293 * 64.99991 * 10 7 6 12 12 C 1.40440 * 125.97705 * 180.02562 * 11 10 7 13 13 C 1.35245 * 107.85969 * 179.69963 * 12 11 10 14 14 N 1.34957 * 107.86843 * 0.42548 * 13 12 11 15 15 C 1.46495 * 125.97696 * 179.83761 * 14 13 12 16 16 C 1.50702 * 109.47571 * 124.71669 * 15 14 13 17 17 H 1.08002 * 119.99446 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00072 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 179.72119 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72576 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72423 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72459 * 20 18 16 24 24 N 1.31227 * 125.97916 * 359.97287 * 11 10 7 25 25 H 1.09007 * 109.47060 * 270.02295 * 1 2 3 26 26 H 1.08992 * 109.46919 * 30.02411 * 1 2 3 27 27 H 1.08997 * 109.46902 * 150.02746 * 1 2 3 28 28 H 1.07993 * 122.54142 * 359.95592 * 3 2 1 29 29 H 1.08011 * 125.19372 * 179.97438 * 4 3 2 30 30 H 0.97004 * 119.99286 * 244.99779 * 10 7 6 31 31 H 1.08000 * 126.06758 * 0.02562 * 12 11 10 32 32 H 1.08007 * 126.06527 * 180.25438 * 13 12 11 33 33 H 1.09000 * 109.47378 * 4.71328 * 15 14 13 34 34 H 1.09001 * 109.47153 * 244.71449 * 15 14 13 35 35 H 0.96999 * 120.00128 * 180.27192 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9901 0.0005 5 16 3.9387 -0.7304 0.0081 6 6 2.2245 -1.1245 0.0005 7 16 1.5572 -2.7551 0.0006 8 8 0.2485 -2.6532 0.5446 9 8 2.5617 -3.5998 0.5455 10 7 1.3721 -3.2092 -1.5812 11 6 2.4960 -3.3643 -2.4010 12 6 2.4847 -3.7423 -3.7535 13 6 3.7657 -3.7723 -4.1864 14 7 4.5613 -3.4365 -3.1493 15 6 6.0232 -3.3483 -3.1795 16 6 6.4537 -1.9803 -2.7164 17 1 5.7123 -1.2496 -2.4288 18 6 7.7939 -1.6614 -2.6609 19 7 8.1693 -0.4658 -2.2620 20 14 9.0762 -2.9251 -3.1591 21 1 9.4766 -3.7193 -1.9698 22 1 8.5056 -3.8298 -4.1892 23 1 10.2658 -2.2310 -3.7141 24 7 3.7444 -3.1810 -2.0405 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5134 28 1 1.7965 2.1464 -0.0007 29 1 4.3078 1.7824 0.0002 30 1 0.4847 -3.3676 -1.9395 31 1 1.6084 -3.9641 -4.3444 32 1 4.0939 -4.0233 -5.1843 33 1 6.3764 -3.5152 -4.1971 34 1 6.4466 -4.1052 -2.5192 35 1 9.1120 -0.2400 -2.2267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356720438.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:46 Heat of formation + Delta-G solvation = 22.832708 kcal Electronic energy + Delta-G solvation = -23673.803402 eV Core-core repulsion = 20119.949410 eV Total energy + Delta-G solvation = -3553.853992 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.98791 -39.39986 -38.33360 -37.13377 -36.67853 -35.06804 -32.81737 -32.06910 -30.91472 -28.84579 -28.80697 -24.61827 -24.21414 -22.41309 -22.06540 -21.14424 -19.73911 -19.14845 -19.03119 -18.55702 -18.23419 -17.04120 -16.62611 -16.41198 -16.12700 -15.67244 -15.42832 -15.01755 -14.75641 -14.46035 -14.29987 -14.18872 -13.93026 -13.59631 -13.43147 -13.26703 -13.15047 -13.06826 -13.00548 -12.88721 -12.69449 -12.36563 -12.17155 -11.86011 -11.74042 -11.46938 -11.27993 -10.79993 -10.28568 -9.85654 -9.31354 -9.14803 -8.28709 -6.35005 -0.88034 -0.39727 0.56944 0.97910 1.21212 1.35262 1.39938 1.41095 1.47482 1.59054 1.95153 2.16519 2.33237 2.55883 3.04081 3.37770 3.66088 3.82737 4.08798 4.17751 4.29166 4.48322 4.52959 4.75825 4.77036 4.85593 4.91076 4.93083 5.01319 5.06066 5.19880 5.31782 5.46714 5.73573 5.97404 6.10660 6.46943 6.75068 6.96695 7.26190 8.86601 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.005492 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.307534 B = 5097.447407 C = 6265.401868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.038 3.962 3 C -0.164 4.164 4 C -0.188 4.188 5 S 0.214 5.786 6 C -0.824 4.824 7 S 2.736 3.264 8 O -0.949 6.949 9 O -0.974 6.974 10 N -0.999 5.999 11 C 0.270 3.730 12 C -0.291 4.291 13 C 0.070 3.930 14 N -0.341 5.341 15 C 0.233 3.767 16 C -0.537 4.537 17 H 0.054 0.946 18 C 0.021 3.979 19 N -0.937 5.937 20 Si 0.937 3.063 21 H -0.276 1.276 22 H -0.230 1.230 23 H -0.282 1.282 24 N -0.346 5.346 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.183 0.817 29 H 0.183 0.817 30 H 0.449 0.551 31 H 0.185 0.815 32 H 0.215 0.785 33 H 0.085 0.915 34 H 0.035 0.965 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.366 -1.089 -2.473 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.019 3.981 3 C -0.194 4.194 4 C -0.326 4.326 5 S 0.484 5.516 6 C -1.028 5.028 7 S 2.825 3.175 8 O -0.940 6.940 9 O -0.964 6.964 10 N -0.756 5.756 11 C 0.012 3.988 12 C -0.323 4.323 13 C -0.078 4.078 14 N -0.122 5.122 15 C 0.113 3.887 16 C -0.575 4.575 17 H 0.072 0.928 18 C -0.178 4.178 19 N -0.577 5.577 20 Si 0.760 3.240 21 H -0.201 1.201 22 H -0.153 1.153 23 H -0.208 1.208 24 N -0.176 5.176 25 H 0.117 0.883 26 H 0.125 0.875 27 H 0.097 0.903 28 H 0.200 0.800 29 H 0.201 0.799 30 H 0.290 0.710 31 H 0.202 0.798 32 H 0.232 0.768 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.941 -2.022 -0.661 13.115 hybrid contribution -0.571 1.093 -0.908 1.531 sum -13.512 -0.930 -1.569 13.635 Atomic orbital electron populations 1.21119 0.86579 1.05202 1.05149 1.19138 0.98773 0.90011 0.90188 1.20561 0.92017 1.00664 1.06191 1.26653 1.01519 1.00854 1.03623 1.85897 0.99762 0.99489 1.66443 1.35289 1.08260 1.25933 1.33349 1.00498 0.72654 0.72443 0.71920 1.93579 1.37491 1.87262 1.75629 1.93586 1.61439 1.65133 1.76259 1.52354 1.12281 1.81325 1.29653 1.19100 0.86565 1.00789 0.92311 1.21358 0.98674 1.19353 0.92944 1.23257 0.90221 0.98846 0.95478 1.48484 1.07259 1.50414 1.06067 1.19940 0.71654 0.97273 0.99792 1.21364 0.93298 0.97852 1.45021 0.92811 1.25677 1.00320 0.97313 0.94508 1.70010 1.17184 1.22124 1.48367 0.85881 0.78767 0.79485 0.79852 1.20129 1.15254 1.20793 1.77461 0.99584 1.28715 1.11824 0.88309 0.87533 0.90322 0.79983 0.79919 0.71006 0.79774 0.76834 0.89728 0.94709 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 8.99 71.24 0.64 -1.91 16 2 C 0.04 1.11 5.80 -20.92 -0.12 0.99 16 3 C -0.16 -4.45 9.98 21.22 0.21 -4.23 16 4 C -0.19 -6.18 11.23 66.72 0.75 -5.43 16 5 S 0.21 8.97 22.43 -56.49 -1.27 7.70 16 6 C -0.82 -29.33 6.50 66.72 0.43 -28.89 16 7 S 2.74 94.13 5.34 -56.49 -0.30 93.83 16 8 O -0.95 -29.97 15.22 -128.00 -1.95 -31.91 16 9 O -0.97 -42.43 17.12 -128.00 -2.19 -44.62 16 10 N -1.00 -29.08 5.91 -54.61 -0.32 -29.41 16 11 C 0.27 9.56 7.72 133.39 1.03 10.59 16 12 C -0.29 -8.23 10.83 22.12 0.24 -7.99 16 13 C 0.07 2.13 11.43 83.52 0.96 3.09 16 14 N -0.34 -14.03 3.67 -351.85 -1.29 -15.32 16 15 C 0.23 10.28 5.33 85.63 0.46 10.73 16 16 C -0.54 -29.08 9.79 25.60 0.25 -28.82 16 17 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 18 C 0.02 1.13 5.47 84.65 0.46 1.59 16 19 N -0.94 -55.39 13.96 21.45 0.30 -55.09 16 20 Si 0.94 40.14 27.47 68.60 1.88 42.03 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.23 -8.44 6.54 99.48 0.65 -7.79 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 24 N -0.35 -15.22 10.68 -54.55 -0.58 -15.80 16 25 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 26 H 0.11 1.54 8.13 -2.39 -0.02 1.52 16 27 H 0.08 1.64 6.22 -2.39 -0.01 1.62 16 28 H 0.18 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.18 5.29 8.06 -2.90 -0.02 5.26 16 30 H 0.45 8.68 8.96 -96.74 -0.87 7.82 16 31 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 32 H 0.22 4.32 8.06 -2.91 -0.02 4.30 16 33 H 0.09 3.18 7.12 -2.39 -0.02 3.17 16 34 H 0.04 1.56 7.57 -2.39 -0.02 1.54 16 35 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -77.76 330.34 -0.19 -77.95 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.22 Total: 20.94 kcal Atomic # 6 Polarization: -55.60 SS G_CDS: 5.31 Total: -50.29 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -1.90 Total: -115.61 kcal Atomic # 8 Polarization: -72.39 SS G_CDS: -4.14 Total: -76.53 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 1.88 Total: 42.03 kcal Atomic # 16 Polarization: 103.10 SS G_CDS: -1.57 Total: 101.53 kcal Total: -77.76 -0.19 -77.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356720438.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.781 kcal (2) G-P(sol) polarization free energy of solvation -77.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds