Wall clock time and date at job start Tue Mar 31 2020 15:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00093 * 2 1 4 4 H 1.48495 * 109.47025 * 269.99948 * 3 2 1 5 5 H 1.48494 * 109.46958 * 30.00204 * 3 2 1 6 6 H 1.48502 * 109.46716 * 150.00100 * 3 2 1 7 7 C 1.37874 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00495 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47558 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47457 * 179.97438 * 10 9 7 12 12 C 1.46895 * 111.00137 * 174.67950 * 11 10 9 13 13 H 1.08997 * 109.47473 * 38.04962 * 12 11 10 14 14 C 1.53010 * 109.47169 * 278.05309 * 12 11 10 15 15 C 1.52997 * 109.46820 * 302.64139 * 14 12 11 16 16 O 1.42902 * 109.46961 * 174.89731 * 15 14 12 17 17 C 1.50694 * 109.47251 * 158.05633 * 12 11 10 18 18 C 1.38237 * 120.00819 * 24.99519 * 17 12 11 19 19 C 1.38220 * 120.01466 * 179.97438 * 18 17 12 20 20 C 1.38264 * 120.01989 * 0.02657 * 19 18 17 21 21 C 1.38197 * 120.00733 * 359.97217 * 20 19 18 22 22 C 1.38308 * 120.00357 * 204.72384 * 17 12 11 23 23 Br 1.89097 * 120.01102 * 0.02562 * 22 17 12 24 24 H 0.96999 * 119.99469 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46901 * 59.99730 * 9 7 2 26 26 H 1.08998 * 109.47114 * 300.00046 * 9 7 2 27 27 H 1.09002 * 109.46921 * 60.00127 * 10 9 7 28 28 H 1.08998 * 109.47260 * 300.00342 * 10 9 7 29 29 H 1.00901 * 110.99672 * 298.63533 * 11 10 9 30 30 H 1.09000 * 109.46583 * 62.64130 * 14 12 11 31 31 H 1.08997 * 109.46839 * 182.64155 * 14 12 11 32 32 H 1.09000 * 109.47526 * 294.90022 * 15 14 12 33 33 H 1.09004 * 109.47332 * 54.90495 * 15 14 12 34 34 H 0.96695 * 114.00177 * 179.97438 * 16 15 14 35 35 H 1.08001 * 119.99188 * 359.96330 * 18 17 12 36 36 H 1.07999 * 119.99153 * 179.97438 * 19 18 17 37 37 H 1.07993 * 119.99502 * 179.97438 * 20 19 18 38 38 H 1.08000 * 120.00375 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5107 -4.9343 0.0012 12 6 2.4299 -6.0730 -0.1260 13 1 3.3362 -5.8741 0.4459 14 6 2.7907 -6.2753 -1.5991 15 6 1.5126 -6.4892 -2.4124 16 8 1.8384 -6.5595 -3.8020 17 6 1.7647 -7.3172 0.4035 18 6 0.3856 -7.4102 0.4201 19 6 -0.2247 -8.5515 0.9053 20 6 0.5439 -9.6006 1.3748 21 6 1.9227 -9.5086 1.3586 22 6 2.5341 -8.3686 0.8679 23 35 4.4208 -8.2449 0.8390 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8906 28 1 2.8719 -3.6044 -0.8894 29 1 0.9392 -5.0215 0.8282 30 1 3.3137 -5.3935 -1.9694 31 1 3.4353 -7.1486 -1.6987 32 1 1.0367 -7.4199 -2.1033 33 1 0.8293 -5.6574 -2.2411 34 1 1.0742 -6.6949 -4.3788 35 1 -0.2152 -6.5907 0.0540 36 1 -1.3022 -8.6236 0.9185 37 1 0.0666 -10.4920 1.7542 38 1 2.5230 -10.3283 1.7250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359538966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:21 Heat of formation + Delta-G solvation = -33.099903 kcal Electronic energy + Delta-G solvation = -19843.532630 eV Core-core repulsion = 16731.569299 eV Total energy + Delta-G solvation = -3111.963331 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.93756 -37.24751 -35.95685 -33.55528 -32.54168 -31.71071 -30.23222 -29.24192 -28.58462 -25.32054 -23.97828 -22.46674 -22.23240 -20.50212 -19.74598 -17.23610 -17.06069 -16.33235 -15.82008 -15.56377 -14.90179 -14.62764 -14.46323 -14.09555 -13.65036 -13.56546 -13.28776 -13.10117 -12.27658 -12.22995 -12.08427 -11.78053 -11.33249 -11.26020 -11.07591 -10.96409 -10.90798 -10.62856 -10.55889 -10.25415 -9.91841 -9.66337 -9.42682 -9.15371 -8.96629 -8.77496 -8.35210 -7.92075 -6.00013 -4.02180 0.94570 1.13597 1.52442 3.32771 3.38860 3.42122 3.46399 4.32660 4.44483 4.52951 4.57576 4.76487 4.87181 5.12146 5.25740 5.34721 5.36463 5.48167 5.51025 5.62549 5.71310 5.85454 5.99910 6.03043 6.21505 6.25230 6.26752 6.33878 6.40684 6.45487 6.67473 6.97483 7.39255 7.69035 7.76019 7.83726 7.91165 8.06370 8.43090 9.04900 9.61747 11.11415 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.015317 B = 0.003529 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.606439 B = 7933.312421 C = 8256.565516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.029 3.971 10 C 0.065 3.935 11 N -0.683 5.683 12 C 0.118 3.882 13 H 0.065 0.935 14 C -0.099 4.099 15 C 0.081 3.919 16 O -0.581 6.581 17 C -0.052 4.052 18 C -0.100 4.100 19 C -0.105 4.105 20 C -0.122 4.122 21 C -0.094 4.094 22 C -0.089 4.089 23 Br -0.051 7.051 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.013 0.987 27 H 0.018 0.982 28 H 0.061 0.939 29 H 0.338 0.662 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.374 0.626 35 H 0.146 0.854 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 -22.788 1.567 23.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.315 5.315 12 C 0.008 3.992 13 H 0.083 0.917 14 C -0.137 4.137 15 C 0.003 3.997 16 O -0.386 6.386 17 C -0.054 4.054 18 C -0.119 4.119 19 C -0.123 4.123 20 C -0.141 4.141 21 C -0.113 4.113 22 C -0.169 4.169 23 Br 0.035 6.965 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.032 0.968 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.157 0.843 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.220 0.780 35 H 0.164 0.836 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.767 -22.493 1.134 22.835 hybrid contribution -0.161 0.766 0.783 1.107 sum 3.607 -21.727 1.916 22.108 Atomic orbital electron populations 1.69972 1.06016 1.26558 1.50750 1.24982 0.94825 0.99170 0.95282 0.86601 0.79825 0.83485 0.78136 1.20623 1.21243 1.19920 1.21173 0.93004 0.91016 1.50795 0.92782 1.19028 0.93937 0.90241 0.97667 1.22237 0.97016 0.88092 0.98960 1.60764 1.23649 1.01587 1.45508 1.20561 0.94967 0.87917 0.95772 0.91708 1.21389 0.97349 1.02607 0.92362 1.22180 0.97525 0.99968 0.79991 1.86431 1.37699 1.96463 1.17998 1.19960 0.93922 0.94912 0.96644 1.21258 0.93529 0.98588 0.98547 1.21346 1.00361 0.93337 0.97289 1.21142 0.93115 0.99281 1.00520 1.21045 0.95150 0.96338 0.98810 1.21724 0.90270 0.98025 1.06851 1.96699 1.03463 1.98495 1.97876 0.93028 0.95679 0.96825 0.96382 0.92028 0.84318 0.90413 0.91557 0.94739 0.91188 0.77981 0.83643 0.85334 0.85407 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.73 5.28 -27.88 -0.15 0.59 16 10 C 0.06 1.33 5.41 -3.82 -0.02 1.31 16 11 N -0.68 -11.37 4.49 -107.95 -0.48 -11.85 16 12 C 0.12 1.72 1.96 -68.86 -0.13 1.59 16 13 H 0.07 1.00 6.67 -51.93 -0.35 0.65 16 14 C -0.10 -1.48 5.34 -26.73 -0.14 -1.62 16 15 C 0.08 1.15 6.37 37.16 0.24 1.39 16 16 O -0.58 -8.32 13.66 -35.23 -0.48 -8.80 16 17 C -0.05 -0.67 4.29 -104.60 -0.45 -1.12 16 18 C -0.10 -1.16 7.66 -39.59 -0.30 -1.46 16 19 C -0.10 -1.01 10.05 -39.58 -0.40 -1.40 16 20 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 21 C -0.09 -0.95 9.79 -39.55 -0.39 -1.33 16 22 C -0.09 -1.07 6.22 -39.51 -0.25 -1.31 16 23 Br -0.05 -0.60 31.36 -68.01 -2.13 -2.73 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 1.29 7.16 -51.93 -0.37 0.92 16 29 H 0.34 5.43 7.51 -39.29 -0.29 5.14 16 30 H 0.08 1.29 7.26 -51.93 -0.38 0.91 16 31 H 0.07 0.95 7.61 -51.93 -0.40 0.56 16 32 H 0.03 0.45 6.80 -51.93 -0.35 0.10 16 33 H 0.07 1.09 7.37 -51.93 -0.38 0.71 16 34 H 0.37 3.62 9.12 45.56 0.42 4.03 16 35 H 0.15 1.72 7.03 -52.49 -0.37 1.35 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -31.09 331.81 -9.74 -40.83 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.55 Total: 5.19 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.80 Total: -18.31 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.25 Total: -37.86 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.48 Total: -8.80 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.13 Total: -2.73 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.09 -9.74 -40.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359538966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.729 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds