Wall clock time and date at job start Tue Mar 31 2020 15:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00093 * 2 1 4 4 H 1.48495 * 109.47025 * 269.99948 * 3 2 1 5 5 H 1.48494 * 109.46958 * 30.00204 * 3 2 1 6 6 H 1.48502 * 109.46716 * 150.00100 * 3 2 1 7 7 C 1.37874 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00495 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47558 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47457 * 179.97438 * 10 9 7 12 12 C 1.46895 * 111.00137 * 174.67950 * 11 10 9 13 13 H 1.08997 * 109.47473 * 38.04962 * 12 11 10 14 14 C 1.53010 * 109.47169 * 278.05309 * 12 11 10 15 15 C 1.52997 * 109.46820 * 302.64139 * 14 12 11 16 16 O 1.42902 * 109.46961 * 174.89731 * 15 14 12 17 17 C 1.50694 * 109.47251 * 158.05633 * 12 11 10 18 18 C 1.38237 * 120.00819 * 24.99519 * 17 12 11 19 19 C 1.38220 * 120.01466 * 179.97438 * 18 17 12 20 20 C 1.38264 * 120.01989 * 0.02657 * 19 18 17 21 21 C 1.38197 * 120.00733 * 359.97217 * 20 19 18 22 22 C 1.38308 * 120.00357 * 204.72384 * 17 12 11 23 23 Br 1.89097 * 120.01102 * 0.02562 * 22 17 12 24 24 H 0.96999 * 119.99469 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46901 * 59.99730 * 9 7 2 26 26 H 1.08998 * 109.47114 * 300.00046 * 9 7 2 27 27 H 1.09002 * 109.46921 * 60.00127 * 10 9 7 28 28 H 1.08998 * 109.47260 * 300.00342 * 10 9 7 29 29 H 1.00901 * 110.99672 * 298.63533 * 11 10 9 30 30 H 1.09000 * 109.46583 * 62.64130 * 14 12 11 31 31 H 1.08997 * 109.46839 * 182.64155 * 14 12 11 32 32 H 1.09000 * 109.47526 * 294.90022 * 15 14 12 33 33 H 1.09004 * 109.47332 * 54.90495 * 15 14 12 34 34 H 0.96695 * 114.00177 * 179.97438 * 16 15 14 35 35 H 1.08001 * 119.99188 * 359.96330 * 18 17 12 36 36 H 1.07999 * 119.99153 * 179.97438 * 19 18 17 37 37 H 1.07993 * 119.99502 * 179.97438 * 20 19 18 38 38 H 1.08000 * 120.00375 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5107 -4.9343 0.0012 12 6 2.4299 -6.0730 -0.1260 13 1 3.3362 -5.8741 0.4459 14 6 2.7907 -6.2753 -1.5991 15 6 1.5126 -6.4892 -2.4124 16 8 1.8384 -6.5595 -3.8020 17 6 1.7647 -7.3172 0.4035 18 6 0.3856 -7.4102 0.4201 19 6 -0.2247 -8.5515 0.9053 20 6 0.5439 -9.6006 1.3748 21 6 1.9227 -9.5086 1.3586 22 6 2.5341 -8.3686 0.8679 23 35 4.4208 -8.2449 0.8390 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8906 28 1 2.8719 -3.6044 -0.8894 29 1 0.9392 -5.0215 0.8282 30 1 3.3137 -5.3935 -1.9694 31 1 3.4353 -7.1486 -1.6987 32 1 1.0367 -7.4199 -2.1033 33 1 0.8293 -5.6574 -2.2411 34 1 1.0742 -6.6949 -4.3788 35 1 -0.2152 -6.5907 0.0540 36 1 -1.3022 -8.6236 0.9185 37 1 0.0666 -10.4920 1.7542 38 1 2.5230 -10.3283 1.7250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359538966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:20 Heat of formation + Delta-G solvation = -53.477880 kcal Electronic energy + Delta-G solvation = -19844.416286 eV Core-core repulsion = 16731.569299 eV Total energy + Delta-G solvation = -3112.846987 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.88163 -38.37933 -37.23688 -35.40433 -33.71454 -33.07750 -31.20331 -30.38191 -30.07687 -26.76137 -25.57297 -23.59315 -23.18491 -22.16642 -20.91034 -18.51702 -18.34828 -18.02016 -16.95878 -16.60754 -16.42344 -15.96037 -15.74892 -15.20867 -14.89020 -14.83331 -14.38668 -14.34712 -13.98204 -13.52321 -13.50894 -12.95013 -12.91426 -12.77668 -12.49167 -12.32418 -12.10138 -12.00466 -11.83351 -11.65628 -11.41593 -11.27419 -11.08854 -10.78470 -10.55040 -9.81894 -9.64163 -9.35172 -8.19817 -6.30324 0.11963 0.31757 0.65101 1.40398 1.41508 1.52329 2.40602 2.65359 3.13972 3.14964 3.37195 3.56217 3.93046 4.12148 4.16374 4.27592 4.38866 4.41163 4.45620 4.53312 4.58380 4.66644 4.73480 4.85383 4.98954 5.04061 5.15368 5.16625 5.25817 5.37070 5.47525 5.50280 5.69213 5.79286 5.89335 6.10376 6.24457 6.47376 6.86362 6.92624 7.38626 8.92137 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.015317 B = 0.003529 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.606439 B = 7933.312421 C = 8256.565516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.038 3.962 10 C 0.085 3.915 11 N -0.678 5.678 12 C 0.126 3.874 13 H 0.057 0.943 14 C -0.097 4.097 15 C 0.089 3.911 16 O -0.597 6.597 17 C -0.069 4.069 18 C -0.111 4.111 19 C -0.101 4.101 20 C -0.112 4.112 21 C -0.095 4.095 22 C -0.102 4.102 23 Br -0.058 7.058 24 H 0.264 0.736 25 H -0.003 1.003 26 H -0.006 1.006 27 H 0.017 0.983 28 H 0.056 0.944 29 H 0.343 0.657 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.394 0.606 35 H 0.137 0.863 36 H 0.154 0.846 37 H 0.162 0.838 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 -24.215 2.068 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.075 0.925 9 C 0.001 3.999 10 C -0.044 4.044 11 N -0.310 5.310 12 C 0.016 3.984 13 H 0.074 0.926 14 C -0.136 4.136 15 C 0.012 3.988 16 O -0.405 6.405 17 C -0.071 4.071 18 C -0.130 4.130 19 C -0.119 4.119 20 C -0.131 4.131 21 C -0.115 4.115 22 C -0.181 4.181 23 Br 0.028 6.972 24 H 0.072 0.928 25 H 0.015 0.985 26 H 0.012 0.988 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.162 0.838 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.243 0.757 35 H 0.155 0.845 36 H 0.172 0.828 37 H 0.179 0.821 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.760 -23.941 1.625 24.289 hybrid contribution -0.227 1.112 0.621 1.294 sum 3.533 -22.830 2.246 23.211 Atomic orbital electron populations 1.70095 1.07655 1.27717 1.51457 1.25894 0.95731 1.03085 0.94655 0.85489 0.78681 0.78668 0.78466 1.19870 1.20578 1.18927 1.21605 0.93428 0.92426 1.50872 0.92520 1.18846 0.94120 0.91751 0.95229 1.21806 0.95618 0.88372 0.98602 1.60613 1.23734 1.00854 1.45798 1.20426 0.94288 0.88037 0.95608 0.92563 1.21360 0.97684 1.01751 0.92758 1.22031 0.96682 0.99973 0.80115 1.86383 1.39401 1.96491 1.18234 1.19747 0.94517 0.94374 0.98478 1.21274 0.92961 0.99432 0.99338 1.21653 1.01794 0.92472 0.96028 1.21548 0.92589 1.00008 0.98907 1.21355 0.96039 0.96033 0.98062 1.21837 0.90002 0.98645 1.07661 1.96687 1.04053 1.98541 1.97926 0.92760 0.98462 0.98799 0.96457 0.92588 0.83824 0.92663 0.90925 0.93175 0.92929 0.75718 0.84486 0.82827 0.82083 0.83392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.96 44.62 29.54 68.60 2.03 46.64 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.54 -31.31 9.11 25.60 0.23 -31.08 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.04 2.01 5.28 29.85 0.16 2.17 16 10 C 0.08 3.58 5.41 86.30 0.47 4.05 16 11 N -0.68 -23.16 4.49 -495.45 -2.23 -25.38 16 12 C 0.13 3.72 1.96 44.17 0.09 3.80 16 13 H 0.06 1.76 6.67 -2.39 -0.02 1.74 16 14 C -0.10 -2.94 5.34 30.60 0.16 -2.77 16 15 C 0.09 2.54 6.37 71.98 0.46 3.00 16 16 O -0.60 -16.81 13.66 -148.98 -2.03 -18.84 16 17 C -0.07 -1.71 4.29 -19.85 -0.09 -1.79 16 18 C -0.11 -2.43 7.66 22.27 0.17 -2.26 16 19 C -0.10 -1.65 10.05 22.27 0.22 -1.43 16 20 C -0.11 -1.60 10.05 22.27 0.22 -1.38 16 21 C -0.10 -1.66 9.79 22.29 0.22 -1.45 16 22 C -0.10 -2.30 6.22 22.31 0.14 -2.16 16 23 Br -0.06 -1.32 31.36 -20.37 -0.64 -1.96 16 24 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 25 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 2.42 7.16 -2.39 -0.02 2.40 16 29 H 0.34 11.26 7.51 -89.69 -0.67 10.59 16 30 H 0.05 1.89 7.26 -2.39 -0.02 1.87 16 31 H 0.07 2.08 7.61 -2.39 -0.02 2.06 16 32 H 0.05 1.27 6.80 -2.39 -0.02 1.25 16 33 H 0.05 1.67 7.37 -2.39 -0.02 1.65 16 34 H 0.39 7.27 9.12 -74.06 -0.68 6.59 16 35 H 0.14 3.19 7.03 -2.91 -0.02 3.17 16 36 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 37 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -67.28 331.81 0.06 -67.22 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -0.27 Total: 19.14 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 2.92 Total: -30.57 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -1.94 Total: -81.63 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -2.03 Total: -18.84 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 35 Polarization: -1.32 SS G_CDS: -0.64 Total: -1.96 kcal Total: -67.28 0.06 -67.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359538966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.745 kcal (2) G-P(sol) polarization free energy of solvation -67.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds