Wall clock time and date at job start Tue Mar 31 2020 15:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48508 * 109.46970 * 240.00416 * 3 2 1 5 5 H 1.48498 * 109.47363 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47213 * 120.00528 * 3 2 1 7 7 C 1.37877 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00122 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46889 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.46896 * 111.00071 * 175.57733 * 11 10 9 13 13 H 1.08999 * 109.46820 * 321.70939 * 12 11 10 14 14 C 1.52995 * 109.47186 * 81.70994 * 12 11 10 15 15 C 1.52997 * 109.47319 * 59.12152 * 14 12 11 16 16 O 1.42896 * 109.47138 * 185.11523 * 15 14 12 17 17 C 1.50698 * 109.46891 * 201.70893 * 12 11 10 18 18 C 1.38232 * 120.00748 * 339.98111 * 17 12 11 19 19 C 1.38219 * 120.01192 * 180.02562 * 18 17 12 20 20 C 1.38265 * 120.02198 * 359.97438 * 19 18 17 21 21 C 1.38202 * 120.00635 * 0.02562 * 20 19 18 22 22 C 1.38307 * 120.00278 * 159.99584 * 17 12 11 23 23 Br 1.89099 * 120.01087 * 359.96195 * 22 17 12 24 24 H 0.96999 * 119.99387 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46991 * 60.00481 * 9 7 2 26 26 H 1.08999 * 109.46738 * 300.00712 * 9 7 2 27 27 H 1.09004 * 109.46871 * 60.00015 * 10 9 7 28 28 H 1.08996 * 109.47345 * 300.00141 * 10 9 7 29 29 H 1.00901 * 110.99368 * 51.61836 * 11 10 9 30 30 H 1.08999 * 109.47005 * 179.12313 * 14 12 11 31 31 H 1.08999 * 109.47047 * 299.12107 * 14 12 11 32 32 H 1.09005 * 109.46952 * 305.11639 * 15 14 12 33 33 H 1.09000 * 109.46896 * 65.11656 * 15 14 12 34 34 H 0.96706 * 114.00004 * 180.02562 * 16 15 14 35 35 H 1.08002 * 119.99826 * 0.02562 * 18 17 12 36 36 H 1.08000 * 119.99143 * 180.02562 * 19 18 17 37 37 H 1.07995 * 119.99625 * 180.28217 * 20 19 18 38 38 H 1.07993 * 120.00262 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 0.0001 12 6 2.4316 -6.0739 -0.1056 13 1 3.2427 -5.8234 -0.7893 14 6 3.0086 -6.3932 1.2749 15 6 1.8684 -6.7236 2.2402 16 8 2.3958 -6.9050 3.5559 17 6 1.6866 -7.2749 -0.6287 18 6 0.3083 -7.3273 -0.5370 19 6 -0.3751 -8.4290 -1.0162 20 6 0.3193 -9.4789 -1.5881 21 6 1.6973 -9.4274 -1.6802 22 6 2.3818 -8.3250 -1.2004 23 35 4.2672 -8.2537 -1.3268 24 1 -0.4849 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8896 27 1 2.8719 -3.6043 0.8895 28 1 2.8719 -3.6044 -0.8905 29 1 0.8232 -4.9552 -0.7381 30 1 3.6799 -7.2486 1.1992 31 1 3.5606 -5.5299 1.6465 32 1 1.1492 -5.9045 2.2468 33 1 1.3733 -7.6395 1.9177 34 1 1.7274 -7.1180 4.2216 35 1 -0.2347 -6.5072 -0.0907 36 1 -1.4520 -8.4694 -0.9447 37 1 -0.2154 -10.3375 -1.9665 38 1 2.2397 -10.2477 -2.1265 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359538975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:25 Heat of formation + Delta-G solvation = -32.458998 kcal Electronic energy + Delta-G solvation = -19837.428186 eV Core-core repulsion = 16725.492647 eV Total energy + Delta-G solvation = -3111.935540 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.94167 -37.25141 -35.98257 -33.57561 -32.55022 -31.69404 -30.25758 -29.23735 -28.56960 -25.30884 -23.98485 -22.48469 -22.22121 -20.53374 -19.75629 -17.26052 -17.06223 -16.34684 -15.79190 -15.51558 -14.93144 -14.64214 -14.46621 -14.11174 -13.63157 -13.56941 -13.36001 -13.10446 -12.25744 -12.23531 -12.07933 -11.78501 -11.37295 -11.26999 -11.05426 -10.96616 -10.89557 -10.61039 -10.55695 -10.26085 -9.94680 -9.67484 -9.41295 -9.18421 -8.97157 -8.76551 -8.36148 -7.94174 -6.00848 -4.03164 0.95157 1.14127 1.52890 3.33762 3.37948 3.40647 3.46973 4.31930 4.43244 4.52527 4.57945 4.76459 4.87122 5.12551 5.26645 5.33808 5.35537 5.48617 5.49752 5.61385 5.71051 5.85634 5.99113 6.03493 6.22637 6.25626 6.27347 6.34167 6.39430 6.43401 6.67798 6.95394 7.38366 7.67973 7.76228 7.81269 7.88191 8.04183 8.41755 9.03433 9.60782 11.10544 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.003505 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.837621 B = 7987.523234 C = 8217.311966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.065 3.935 11 N -0.684 5.684 12 C 0.119 3.881 13 H 0.065 0.935 14 C -0.100 4.100 15 C 0.082 3.918 16 O -0.581 6.581 17 C -0.051 4.051 18 C -0.102 4.102 19 C -0.104 4.104 20 C -0.122 4.122 21 C -0.093 4.093 22 C -0.089 4.089 23 Br -0.051 7.051 24 H 0.261 0.739 25 H 0.013 0.987 26 H 0.025 0.975 27 H 0.062 0.938 28 H 0.018 0.982 29 H 0.339 0.661 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.034 0.966 34 H 0.374 0.626 35 H 0.146 0.854 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.435 -22.702 -2.222 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.063 4.063 11 N -0.316 5.316 12 C 0.009 3.991 13 H 0.083 0.917 14 C -0.139 4.139 15 C 0.004 3.996 16 O -0.386 6.386 17 C -0.054 4.054 18 C -0.121 4.121 19 C -0.122 4.122 20 C -0.141 4.141 21 C -0.113 4.113 22 C -0.169 4.169 23 Br 0.035 6.965 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.044 0.956 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.158 0.842 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.220 0.780 35 H 0.164 0.836 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.530 -22.440 -1.907 22.796 hybrid contribution -0.265 0.825 -0.735 1.136 sum 3.264 -21.615 -2.642 22.019 Atomic orbital electron populations 1.69960 1.06023 1.26704 1.50627 1.24984 0.94833 0.99185 0.95240 0.86653 0.79581 0.83100 0.78637 1.20289 1.21278 1.20192 1.21124 0.92982 0.90961 1.50968 0.92781 1.19067 0.93961 0.90473 0.97623 1.22242 0.97152 0.87918 0.99005 1.60804 1.16223 1.02146 1.52464 1.20552 0.94169 0.88452 0.95971 0.91707 1.21416 0.97546 1.02318 0.92580 1.22162 0.96332 0.99444 0.81642 1.86436 1.38979 1.94012 1.19126 1.19957 0.94244 0.94945 0.96210 1.21262 0.93018 0.98887 0.98947 1.21344 1.00388 0.93463 0.97050 1.21143 0.93522 0.99227 1.00225 1.21044 0.94593 0.96650 0.99010 1.21702 0.90389 0.98450 1.06360 1.96697 1.03705 1.98702 1.97412 0.92952 0.96859 0.95645 0.91977 0.96323 0.84197 0.91346 0.90423 0.91349 0.94774 0.77998 0.83609 0.85323 0.85404 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.67 5.19 -27.88 -0.14 0.52 16 10 C 0.06 1.33 5.45 -3.82 -0.02 1.31 16 11 N -0.68 -11.41 4.65 -107.96 -0.50 -11.91 16 12 C 0.12 1.74 1.92 -68.87 -0.13 1.61 16 13 H 0.07 1.01 6.79 -51.93 -0.35 0.65 16 14 C -0.10 -1.49 5.30 -26.73 -0.14 -1.63 16 15 C 0.08 1.15 6.42 37.16 0.24 1.39 16 16 O -0.58 -8.18 13.66 -35.23 -0.48 -8.66 16 17 C -0.05 -0.66 4.13 -104.60 -0.43 -1.09 16 18 C -0.10 -1.19 8.08 -39.59 -0.32 -1.51 16 19 C -0.10 -1.01 10.05 -39.58 -0.40 -1.40 16 20 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 21 C -0.09 -0.95 9.79 -39.55 -0.39 -1.33 16 22 C -0.09 -1.08 6.22 -39.52 -0.25 -1.32 16 23 Br -0.05 -0.60 30.86 -68.01 -2.10 -2.70 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.30 7.37 -51.93 -0.38 0.92 16 28 H 0.02 0.38 7.96 -51.93 -0.41 -0.03 16 29 H 0.34 5.50 7.13 -39.29 -0.28 5.22 16 30 H 0.07 0.98 6.99 -51.93 -0.36 0.61 16 31 H 0.08 1.27 7.36 -51.93 -0.38 0.89 16 32 H 0.07 1.04 7.42 -51.93 -0.39 0.66 16 33 H 0.03 0.45 6.99 -51.93 -0.36 0.08 16 34 H 0.37 3.52 9.12 45.56 0.42 3.93 16 35 H 0.15 1.73 6.77 -52.49 -0.36 1.38 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 330.89 15.07 4.99 4.99 Total: -1.00 -30.98 330.89 -9.69 -40.67 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.52 Total: 5.32 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -2.79 Total: -18.40 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.23 Total: -37.87 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.48 Total: -8.66 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.10 Total: -2.70 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.98 -9.69 -40.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359538975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.206 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds