Wall clock time and date at job start Tue Mar 31 2020 15:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48508 * 109.46970 * 240.00416 * 3 2 1 5 5 H 1.48498 * 109.47363 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47213 * 120.00528 * 3 2 1 7 7 C 1.37877 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00122 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46889 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.46896 * 111.00071 * 175.57733 * 11 10 9 13 13 H 1.08999 * 109.46820 * 321.70939 * 12 11 10 14 14 C 1.52995 * 109.47186 * 81.70994 * 12 11 10 15 15 C 1.52997 * 109.47319 * 59.12152 * 14 12 11 16 16 O 1.42896 * 109.47138 * 185.11523 * 15 14 12 17 17 C 1.50698 * 109.46891 * 201.70893 * 12 11 10 18 18 C 1.38232 * 120.00748 * 339.98111 * 17 12 11 19 19 C 1.38219 * 120.01192 * 180.02562 * 18 17 12 20 20 C 1.38265 * 120.02198 * 359.97438 * 19 18 17 21 21 C 1.38202 * 120.00635 * 0.02562 * 20 19 18 22 22 C 1.38307 * 120.00278 * 159.99584 * 17 12 11 23 23 Br 1.89099 * 120.01087 * 359.96195 * 22 17 12 24 24 H 0.96999 * 119.99387 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46991 * 60.00481 * 9 7 2 26 26 H 1.08999 * 109.46738 * 300.00712 * 9 7 2 27 27 H 1.09004 * 109.46871 * 60.00015 * 10 9 7 28 28 H 1.08996 * 109.47345 * 300.00141 * 10 9 7 29 29 H 1.00901 * 110.99368 * 51.61836 * 11 10 9 30 30 H 1.08999 * 109.47005 * 179.12313 * 14 12 11 31 31 H 1.08999 * 109.47047 * 299.12107 * 14 12 11 32 32 H 1.09005 * 109.46952 * 305.11639 * 15 14 12 33 33 H 1.09000 * 109.46896 * 65.11656 * 15 14 12 34 34 H 0.96706 * 114.00004 * 180.02562 * 16 15 14 35 35 H 1.08002 * 119.99826 * 0.02562 * 18 17 12 36 36 H 1.08000 * 119.99143 * 180.02562 * 19 18 17 37 37 H 1.07995 * 119.99625 * 180.28217 * 20 19 18 38 38 H 1.07993 * 120.00262 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 0.0001 12 6 2.4316 -6.0739 -0.1056 13 1 3.2427 -5.8234 -0.7893 14 6 3.0086 -6.3932 1.2749 15 6 1.8684 -6.7236 2.2402 16 8 2.3958 -6.9050 3.5559 17 6 1.6866 -7.2749 -0.6287 18 6 0.3083 -7.3273 -0.5370 19 6 -0.3751 -8.4290 -1.0162 20 6 0.3193 -9.4789 -1.5881 21 6 1.6973 -9.4274 -1.6802 22 6 2.3818 -8.3250 -1.2004 23 35 4.2672 -8.2537 -1.3268 24 1 -0.4849 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8896 27 1 2.8719 -3.6043 0.8895 28 1 2.8719 -3.6044 -0.8905 29 1 0.8232 -4.9552 -0.7381 30 1 3.6799 -7.2486 1.1992 31 1 3.5606 -5.5299 1.6465 32 1 1.1492 -5.9045 2.2468 33 1 1.3733 -7.6395 1.9177 34 1 1.7274 -7.1180 4.2216 35 1 -0.2347 -6.5072 -0.0907 36 1 -1.4520 -8.4694 -0.9447 37 1 -0.2154 -10.3375 -1.9665 38 1 2.2397 -10.2477 -2.1265 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359538975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:24 Heat of formation + Delta-G solvation = -52.768134 kcal Electronic energy + Delta-G solvation = -19838.308857 eV Core-core repulsion = 16725.492647 eV Total energy + Delta-G solvation = -3112.816210 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.89126 -38.37752 -37.25488 -35.41169 -33.74585 -33.05537 -31.22703 -30.35521 -30.07893 -26.75298 -25.56555 -23.61570 -23.18866 -22.19029 -20.91275 -18.51874 -18.36325 -18.00266 -16.95635 -16.59588 -16.38532 -16.01869 -15.72408 -15.23339 -14.96781 -14.81582 -14.39129 -14.33914 -13.99190 -13.52840 -13.48071 -12.94302 -12.90125 -12.77140 -12.51638 -12.34438 -12.10213 -12.03491 -11.82160 -11.61989 -11.40998 -11.29605 -11.09985 -10.77726 -10.55235 -9.82530 -9.64059 -9.37624 -8.20139 -6.30771 0.11970 0.31641 0.65017 1.40402 1.43076 1.50924 2.40516 2.65355 3.13534 3.14553 3.36352 3.55913 3.92545 4.12253 4.15917 4.27042 4.38619 4.41463 4.45705 4.54912 4.59133 4.64230 4.72860 4.85400 4.98347 5.02414 5.14909 5.15636 5.25684 5.36171 5.46892 5.49742 5.67721 5.78615 5.89041 6.09791 6.23350 6.45753 6.85274 6.92332 7.38156 8.91553 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.003505 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.837621 B = 7987.523234 C = 8217.311966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.035 3.965 10 C 0.085 3.915 11 N -0.678 5.678 12 C 0.127 3.873 13 H 0.055 0.945 14 C -0.099 4.099 15 C 0.091 3.909 16 O -0.596 6.596 17 C -0.068 4.068 18 C -0.114 4.114 19 C -0.101 4.101 20 C -0.113 4.113 21 C -0.095 4.095 22 C -0.102 4.102 23 Br -0.057 7.057 24 H 0.264 0.736 25 H -0.006 1.006 26 H -0.002 1.002 27 H 0.056 0.944 28 H 0.017 0.983 29 H 0.343 0.657 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.394 0.606 35 H 0.138 0.862 36 H 0.154 0.846 37 H 0.162 0.838 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 -24.080 -2.707 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.584 4.584 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.044 4.044 11 N -0.310 5.310 12 C 0.017 3.983 13 H 0.073 0.927 14 C -0.137 4.137 15 C 0.013 3.987 16 O -0.404 6.404 17 C -0.070 4.070 18 C -0.132 4.132 19 C -0.119 4.119 20 C -0.131 4.131 21 C -0.114 4.114 22 C -0.182 4.182 23 Br 0.028 6.972 24 H 0.073 0.927 25 H 0.012 0.988 26 H 0.017 0.983 27 H 0.074 0.926 28 H 0.035 0.965 29 H 0.162 0.838 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.243 0.757 35 H 0.155 0.845 36 H 0.172 0.828 37 H 0.179 0.821 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.461 -23.840 -2.381 24.207 hybrid contribution -0.309 1.154 -0.580 1.328 sum 3.152 -22.686 -2.961 23.095 Atomic orbital electron populations 1.70085 1.07645 1.27812 1.51336 1.25894 0.95737 1.03084 0.94610 0.85544 0.78337 0.78329 0.79095 1.19283 1.20659 1.19362 1.21564 0.93435 0.92378 1.51055 0.92493 1.18889 0.94143 0.91915 0.95273 1.21818 0.95784 0.88192 0.98590 1.60674 1.16306 1.01304 1.52749 1.20421 0.93617 0.88455 0.95836 0.92690 1.21386 0.97813 1.01557 0.92950 1.22005 0.95516 0.99439 0.81724 1.86387 1.40391 1.94075 1.19580 1.19749 0.94717 0.94593 0.97987 1.21278 0.92569 0.99697 0.99701 1.21651 1.01702 0.92627 0.95903 1.21550 0.93116 0.99782 0.98658 1.21356 0.95337 0.96378 0.98360 1.21816 0.90230 0.99042 1.07088 1.96685 1.04292 1.98735 1.97442 0.92735 0.98769 0.98316 0.92589 0.96480 0.83805 0.90729 0.92588 0.92897 0.93391 0.75701 0.84468 0.82837 0.82070 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.55 -31.31 9.11 25.60 0.23 -31.07 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.04 1.86 5.19 29.85 0.15 2.01 16 10 C 0.08 3.59 5.45 86.30 0.47 4.06 16 11 N -0.68 -23.24 4.65 -495.46 -2.31 -25.54 16 12 C 0.13 3.75 1.92 44.17 0.08 3.83 16 13 H 0.06 1.74 6.79 -2.39 -0.02 1.72 16 14 C -0.10 -2.96 5.30 30.59 0.16 -2.80 16 15 C 0.09 2.54 6.42 71.98 0.46 3.00 16 16 O -0.60 -16.43 13.66 -148.98 -2.03 -18.46 16 17 C -0.07 -1.71 4.13 -19.85 -0.08 -1.79 16 18 C -0.11 -2.52 8.08 22.26 0.18 -2.34 16 19 C -0.10 -1.66 10.05 22.27 0.22 -1.44 16 20 C -0.11 -1.63 10.05 22.27 0.22 -1.41 16 21 C -0.09 -1.67 9.79 22.29 0.22 -1.45 16 22 C -0.10 -2.32 6.22 22.31 0.14 -2.18 16 23 Br -0.06 -1.31 30.86 -20.37 -0.63 -1.94 16 24 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 25 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 27 H 0.06 2.43 7.37 -2.39 -0.02 2.41 16 28 H 0.02 0.72 7.96 -2.39 -0.02 0.70 16 29 H 0.34 11.42 7.13 -89.69 -0.64 10.78 16 30 H 0.07 2.13 6.99 -2.39 -0.02 2.11 16 31 H 0.06 1.89 7.36 -2.39 -0.02 1.88 16 32 H 0.05 1.64 7.42 -2.38 -0.02 1.62 16 33 H 0.05 1.21 6.99 -2.39 -0.02 1.19 16 34 H 0.39 7.00 9.12 -74.05 -0.68 6.33 16 35 H 0.14 3.23 6.77 -2.91 -0.02 3.21 16 36 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -66.92 330.89 0.04 -66.88 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -0.24 Total: 19.40 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 2.93 Total: -30.82 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -2.02 Total: -81.59 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -2.03 Total: -18.46 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 35 Polarization: -1.31 SS G_CDS: -0.63 Total: -1.94 kcal Total: -66.92 0.04 -66.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359538975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.112 kcal (2) G-P(sol) polarization free energy of solvation -66.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds