Wall clock time and date at job start Tue Mar 31 2020 15:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00025 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00035 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99846 * 180.02562 * 13 11 10 15 15 H 1.08996 * 115.55228 * 9.41845 * 14 13 11 16 16 C 1.53005 * 117.50013 * 223.74742 * 14 13 11 17 17 C 1.53002 * 117.49549 * 155.09122 * 14 13 11 18 18 H 1.08996 * 117.49921 * 359.97362 * 17 14 13 19 19 C 1.50706 * 117.49507 * 214.97829 * 17 14 13 20 20 C 1.38264 * 119.98149 * 120.00189 * 19 17 14 21 21 C 1.38207 * 120.04057 * 179.97438 * 20 19 17 22 22 C 1.38342 * 119.99931 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 120.02070 * 179.97438 * 22 21 20 24 24 C 1.38446 * 119.96103 * 359.97438 * 22 21 20 25 25 Cl 1.73603 * 120.02033 * 180.02562 * 24 22 21 26 26 C 1.38201 * 119.98080 * 299.72555 * 19 17 14 27 27 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 29 29 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 30 30 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 31 31 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 32 32 H 0.96998 * 119.99962 * 0.02562 * 13 11 10 33 33 H 1.09006 * 117.49505 * 0.02562 * 16 14 13 34 34 H 1.08999 * 117.50131 * 145.02174 * 16 14 13 35 35 H 1.07999 * 119.97785 * 0.02562 * 20 19 17 36 36 H 1.07999 * 119.99967 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.00197 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0021 13 7 2.1659 -6.1343 -0.0018 14 6 1.4334 -7.4030 -0.0030 15 1 0.3583 -7.3250 -0.1642 16 6 1.9289 -8.5058 0.9348 17 6 2.1465 -8.6298 -0.5753 18 1 3.1603 -8.4928 -0.9512 19 6 1.3083 -9.6381 -1.3183 20 6 1.5817 -9.9213 -2.6438 21 6 0.8142 -10.8461 -3.3262 22 6 -0.2287 -11.4887 -2.6833 23 17 -1.1935 -12.6500 -3.5402 24 6 -0.5024 -11.2052 -1.3561 25 17 -1.8102 -12.0113 -0.5476 26 6 0.2706 -10.2834 -0.6729 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8721 -3.6042 -0.8905 31 1 2.8721 -3.6043 0.8895 32 1 3.1359 -6.1343 -0.0015 33 1 2.7997 -8.2871 1.5530 34 1 1.1798 -9.1534 1.3903 35 1 2.3960 -9.4200 -3.1458 36 1 1.0280 -11.0665 -4.3616 37 1 0.0606 -10.0653 0.3639 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360543611.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:52 Heat of formation + Delta-G solvation = -15.499627 kcal Electronic energy + Delta-G solvation = -21377.341478 eV Core-core repulsion = 17785.445108 eV Total energy + Delta-G solvation = -3591.896370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.39074 -39.24198 -37.57081 -36.87220 -36.50757 -33.48672 -33.06238 -31.32333 -31.05303 -30.29917 -25.88194 -24.47490 -23.29538 -22.63189 -21.22747 -20.91137 -19.80653 -17.92777 -16.94534 -16.75415 -16.01430 -15.87344 -15.65450 -14.92109 -14.77595 -14.45569 -14.42247 -14.30364 -13.51374 -13.08045 -12.64869 -12.60868 -12.31726 -12.24933 -12.18206 -12.15977 -11.84187 -11.40074 -11.23544 -11.20133 -11.18669 -10.94248 -10.75925 -10.60588 -9.99776 -9.71269 -9.38894 -9.25542 -9.12710 -9.04011 -8.52356 -8.33945 -5.98167 -4.02887 0.50917 0.67562 1.47586 1.84208 2.84422 3.10086 3.27857 3.31873 3.38394 3.40768 3.77392 4.18644 4.22968 4.45558 4.47684 4.57915 4.68708 4.74846 4.85121 4.96330 5.23699 5.36819 5.37996 5.40252 5.53173 5.60201 5.74682 5.87997 6.01432 6.15910 6.16664 6.17893 6.60643 6.83689 7.71297 7.75455 7.82657 8.04315 8.35324 8.67169 9.05481 9.60843 11.12753 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.023402 B = 0.001964 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.170624 B =14255.555593 C =14336.470980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.514 3.486 12 O -0.529 6.529 13 N -0.716 5.716 14 C 0.109 3.891 15 H 0.139 0.861 16 C -0.186 4.186 17 C -0.137 4.137 18 H 0.122 0.878 19 C -0.026 4.026 20 C -0.096 4.096 21 C -0.095 4.095 22 C -0.038 4.038 23 Cl -0.053 7.053 24 C -0.025 4.025 25 Cl -0.049 7.049 26 C -0.101 4.101 27 H 0.261 0.739 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.400 0.600 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.776 -27.796 -3.826 28.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.303 3.697 12 O -0.403 6.403 13 N -0.368 5.368 14 C 0.002 3.998 15 H 0.156 0.844 16 C -0.225 4.225 17 C -0.156 4.156 18 H 0.140 0.860 19 C -0.027 4.027 20 C -0.114 4.114 21 C -0.113 4.113 22 C -0.066 4.066 23 Cl -0.024 7.024 24 C -0.053 4.053 25 Cl -0.020 7.020 26 C -0.120 4.120 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.234 0.766 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.158 0.842 36 H 0.161 0.839 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.498 -27.790 -3.826 28.269 hybrid contribution 0.778 0.614 -0.053 0.993 sum 4.276 -27.176 -3.879 27.783 Atomic orbital electron populations 1.69992 1.06060 1.26639 1.50079 1.25028 0.94834 0.99261 0.95283 0.86586 0.79755 0.83491 0.78074 1.20662 1.21212 1.19892 1.21207 0.92922 0.90976 1.51525 0.92583 1.18911 0.93170 0.89344 0.98694 1.21886 1.00775 0.91604 1.02631 1.21660 0.88730 0.85407 0.73912 1.90680 1.14480 1.87436 1.47692 1.45692 1.09664 1.04338 1.77078 1.21690 0.97595 0.79736 1.00766 0.84375 1.23673 1.04527 1.02833 0.91418 1.21602 1.00071 0.98226 0.95715 0.85991 1.19127 0.94647 0.95297 0.93639 1.21065 0.99855 0.96929 0.93545 1.21036 0.93599 0.95983 1.00725 1.20785 0.96875 0.97260 0.91671 1.98391 1.70297 1.57239 1.76439 1.20728 0.93969 0.98755 0.91817 1.98399 1.46583 1.78179 1.78857 1.20980 0.94675 0.95341 1.01005 0.92909 0.95775 0.95768 0.90080 0.90060 0.76586 0.87615 0.87671 0.84200 0.83871 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 10 C -0.13 -2.50 5.64 -27.88 -0.16 -2.66 16 11 C 0.51 9.37 7.83 -10.99 -0.09 9.28 16 12 O -0.53 -12.06 15.55 5.56 0.09 -11.97 16 13 N -0.72 -9.08 5.57 -53.81 -0.30 -9.38 16 14 C 0.11 1.23 6.06 -67.93 -0.41 0.82 16 15 H 0.14 1.90 7.40 -51.93 -0.38 1.51 16 16 C -0.19 -1.51 9.79 -26.69 -0.26 -1.77 16 17 C -0.14 -1.10 5.97 -91.73 -0.55 -1.65 16 18 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 19 C -0.03 -0.23 5.61 -104.62 -0.59 -0.81 16 20 C -0.10 -0.73 9.73 -39.58 -0.39 -1.12 16 21 C -0.09 -0.74 9.83 -39.55 -0.39 -1.13 16 22 C -0.04 -0.36 6.32 -39.47 -0.25 -0.60 16 23 Cl -0.05 -0.47 27.96 -51.86 -1.45 -1.92 16 24 C -0.03 -0.24 6.32 -39.46 -0.25 -0.49 16 25 Cl -0.05 -0.47 27.96 -51.86 -1.45 -1.92 16 26 C -0.10 -0.91 9.09 -39.55 -0.36 -1.27 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.40 3.75 8.83 -40.82 -0.36 3.39 16 33 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 0.77 6.17 -51.93 -0.32 0.45 16 35 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.15 1.15 6.01 -52.48 -0.32 0.84 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -33.62 351.55 -10.61 -44.23 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.30 Total: -0.18 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -4.21 Total: -14.08 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.44 Total: -35.87 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -2.90 Total: -3.85 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.62 -10.61 -44.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360543611.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.728 kcal (2) G-P(sol) polarization free energy of solvation -33.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds