Wall clock time and date at job start Tue Mar 31 2020 15:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00025 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00035 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99846 * 180.02562 * 13 11 10 15 15 H 1.08996 * 115.55228 * 9.41845 * 14 13 11 16 16 C 1.53005 * 117.50013 * 223.74742 * 14 13 11 17 17 C 1.53002 * 117.49549 * 155.09122 * 14 13 11 18 18 H 1.08996 * 117.49921 * 359.97362 * 17 14 13 19 19 C 1.50706 * 117.49507 * 214.97829 * 17 14 13 20 20 C 1.38264 * 119.98149 * 120.00189 * 19 17 14 21 21 C 1.38207 * 120.04057 * 179.97438 * 20 19 17 22 22 C 1.38342 * 119.99931 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 120.02070 * 179.97438 * 22 21 20 24 24 C 1.38446 * 119.96103 * 359.97438 * 22 21 20 25 25 Cl 1.73603 * 120.02033 * 180.02562 * 24 22 21 26 26 C 1.38201 * 119.98080 * 299.72555 * 19 17 14 27 27 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 29 29 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 30 30 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 31 31 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 32 32 H 0.96998 * 119.99962 * 0.02562 * 13 11 10 33 33 H 1.09006 * 117.49505 * 0.02562 * 16 14 13 34 34 H 1.08999 * 117.50131 * 145.02174 * 16 14 13 35 35 H 1.07999 * 119.97785 * 0.02562 * 20 19 17 36 36 H 1.07999 * 119.99967 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.00197 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0021 13 7 2.1659 -6.1343 -0.0018 14 6 1.4334 -7.4030 -0.0030 15 1 0.3583 -7.3250 -0.1642 16 6 1.9289 -8.5058 0.9348 17 6 2.1465 -8.6298 -0.5753 18 1 3.1603 -8.4928 -0.9512 19 6 1.3083 -9.6381 -1.3183 20 6 1.5817 -9.9213 -2.6438 21 6 0.8142 -10.8461 -3.3262 22 6 -0.2287 -11.4887 -2.6833 23 17 -1.1935 -12.6500 -3.5402 24 6 -0.5024 -11.2052 -1.3561 25 17 -1.8102 -12.0113 -0.5476 26 6 0.2706 -10.2834 -0.6729 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8721 -3.6042 -0.8905 31 1 2.8721 -3.6043 0.8895 32 1 3.1359 -6.1343 -0.0015 33 1 2.7997 -8.2871 1.5530 34 1 1.1798 -9.1534 1.3903 35 1 2.3960 -9.4200 -3.1458 36 1 1.0280 -11.0665 -4.3616 37 1 0.0606 -10.0653 0.3639 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360543611.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:52 Heat of formation + Delta-G solvation = -35.608927 kcal Electronic energy + Delta-G solvation = -21378.213483 eV Core-core repulsion = 17785.445108 eV Total energy + Delta-G solvation = -3592.768375 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19759 -40.42392 -38.46050 -37.58200 -37.28246 -35.54623 -34.24100 -32.85127 -31.96082 -31.16866 -27.79155 -25.15549 -24.40545 -23.72653 -22.46868 -21.67940 -21.19493 -18.92005 -18.50167 -17.62995 -17.43558 -16.73447 -16.57872 -16.43395 -16.38137 -15.57029 -15.14797 -14.98948 -14.85440 -14.32603 -14.21582 -13.86038 -13.34726 -13.21763 -12.98498 -12.97455 -12.91419 -12.80741 -12.58383 -12.46608 -12.16903 -12.05746 -11.89710 -11.88715 -11.64024 -11.45956 -11.29059 -10.75313 -10.55712 -10.06473 -9.93289 -9.38056 -8.16838 -6.30830 -0.17105 0.03384 0.77545 1.15870 1.43369 1.45982 1.56824 1.65795 2.09094 2.33583 2.45406 3.02461 3.16355 3.53539 3.55448 3.71653 3.86726 4.02157 4.08154 4.09549 4.22196 4.34209 4.50919 4.58950 4.63223 4.77482 4.87968 4.93799 4.99058 5.12656 5.14023 5.36999 5.49627 5.55066 5.57518 5.65164 5.87278 6.18817 6.61792 6.88301 7.36346 7.39806 8.95833 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.023402 B = 0.001964 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.170624 B =14255.555593 C =14336.470980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.254 1.254 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.040 3.960 10 C -0.118 4.118 11 C 0.515 3.485 12 O -0.589 6.589 13 N -0.688 5.688 14 C 0.071 3.929 15 H 0.105 0.895 16 C -0.167 4.167 17 C -0.107 4.107 18 H 0.150 0.850 19 C -0.039 4.039 20 C -0.091 4.091 21 C -0.096 4.096 22 C -0.049 4.049 23 Cl -0.056 7.056 24 C -0.042 4.042 25 Cl -0.057 7.057 26 C -0.108 4.108 27 H 0.262 0.738 28 H -0.019 1.019 29 H -0.019 1.019 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.421 0.579 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.364 -28.377 -4.172 29.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.178 1.178 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.003 3.997 10 C -0.158 4.158 11 C 0.304 3.696 12 O -0.468 6.468 13 N -0.339 5.339 14 C -0.036 4.036 15 H 0.123 0.877 16 C -0.205 4.205 17 C -0.126 4.126 18 H 0.168 0.832 19 C -0.040 4.040 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.077 4.077 23 Cl -0.027 7.027 24 C -0.069 4.069 25 Cl -0.028 7.028 26 C -0.126 4.126 27 H 0.071 0.929 28 H 0.000 1.000 29 H 0.000 1.000 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.259 0.741 33 H 0.143 0.857 34 H 0.129 0.871 35 H 0.184 0.816 36 H 0.182 0.818 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.161 -28.434 -4.170 29.617 hybrid contribution -0.364 0.684 0.032 0.775 sum 6.797 -27.750 -4.138 28.869 Atomic orbital electron populations 1.70178 1.08348 1.27775 1.51581 1.26153 0.95715 1.04013 0.94738 0.85322 0.78695 0.77726 0.78499 1.19733 1.21372 1.17772 1.21730 0.94066 0.91555 1.50579 0.90403 1.18703 0.93789 0.92593 0.94656 1.21638 0.99253 0.89747 1.05121 1.21369 0.87814 0.86670 0.73767 1.90666 1.16904 1.88276 1.50962 1.45244 1.10537 1.03363 1.74799 1.21666 0.96426 0.79964 1.05521 0.87699 1.23781 1.04856 0.99971 0.91895 1.21651 1.00388 0.94916 0.95680 0.83227 1.19298 0.94782 0.95605 0.94311 1.21396 1.00079 0.96312 0.93109 1.21335 0.92882 0.95508 1.01703 1.21003 0.97422 0.97573 0.91699 1.98387 1.70503 1.57396 1.76396 1.20876 0.94298 0.99480 0.92273 1.98390 1.47026 1.78379 1.79029 1.21120 0.94808 0.95277 1.01425 0.92912 1.00038 1.00031 0.87438 0.87459 0.74115 0.85670 0.87059 0.81631 0.81798 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.48 13.29 21.45 0.28 -59.19 16 2 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 3 Si 0.97 43.84 29.54 68.60 2.03 45.86 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.54 -30.34 9.11 25.60 0.23 -30.10 16 8 H 0.08 3.93 7.74 -2.91 -0.02 3.90 16 9 C 0.04 2.21 4.26 29.85 0.13 2.33 16 10 C -0.12 -4.48 5.64 29.85 0.17 -4.31 16 11 C 0.51 18.85 7.83 87.66 0.69 19.53 16 12 O -0.59 -28.35 15.55 -3.04 -0.05 -28.40 16 13 N -0.69 -16.20 5.57 -442.54 -2.46 -18.66 16 14 C 0.07 1.50 6.06 44.99 0.27 1.77 16 15 H 0.11 3.00 7.40 -2.39 -0.02 2.99 16 16 C -0.17 -2.26 9.79 30.62 0.30 -1.96 16 17 C -0.11 -1.40 5.97 -11.51 -0.07 -1.47 16 18 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 19 C -0.04 -0.59 5.61 -19.87 -0.11 -0.70 16 20 C -0.09 -1.14 9.73 22.27 0.22 -0.93 16 21 C -0.10 -1.30 9.83 22.29 0.22 -1.09 16 22 C -0.05 -0.87 6.32 22.34 0.14 -0.73 16 23 Cl -0.06 -0.98 27.96 -2.72 -0.08 -1.05 16 24 C -0.04 -0.79 6.32 22.35 0.14 -0.65 16 25 Cl -0.06 -1.11 27.96 -2.72 -0.08 -1.19 16 26 C -0.11 -1.85 9.09 22.29 0.20 -1.64 16 27 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 28 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 29 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 30 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 31 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 32 H 0.42 6.35 8.83 -92.71 -0.82 5.53 16 33 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.11 1.40 6.17 -2.39 -0.01 1.39 16 35 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 36 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.15 2.30 6.01 -2.91 -0.02 2.28 16 Total: -1.00 -78.14 351.55 2.94 -75.21 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.30 Total: 7.41 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 2.99 Total: -19.99 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -2.18 Total: -77.86 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.05 Total: -28.40 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.15 Total: -2.24 kcal Total: -78.14 2.94 -75.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360543611.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.600 kcal (2) G-P(sol) polarization free energy of solvation -78.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds