Wall clock time and date at job start Tue Mar 31 2020 15:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99934 * 2 1 4 4 H 1.48497 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47037 * 299.99730 * 3 2 1 6 6 H 1.48496 * 109.47358 * 59.99938 * 3 2 1 7 7 C 1.37878 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99965 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47290 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47009 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00452 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99591 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99789 * 179.97438 * 13 11 10 15 15 H 1.08996 * 115.55110 * 9.32824 * 14 13 11 16 16 C 1.53003 * 117.49633 * 223.62096 * 14 13 11 17 17 C 1.52999 * 117.49820 * 155.00091 * 14 13 11 18 18 H 1.08995 * 117.49765 * 214.99790 * 17 14 13 19 19 C 1.50706 * 117.49833 * 0.02562 * 17 14 13 20 20 C 1.38262 * 119.98013 * 59.72425 * 19 17 14 21 21 C 1.38211 * 120.03072 * 179.72311 * 20 19 17 22 22 C 1.38343 * 120.00541 * 0.55548 * 21 20 19 23 23 Cl 1.73601 * 120.02171 * 179.74743 * 22 21 20 24 24 C 1.38447 * 119.95598 * 359.71659 * 22 21 20 25 25 Cl 1.73606 * 120.01614 * 180.02562 * 24 22 21 26 26 C 1.38203 * 119.97661 * 239.99755 * 19 17 14 27 27 H 0.97005 * 120.00141 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47478 * 59.99560 * 9 7 2 29 29 H 1.09003 * 109.46874 * 299.99286 * 9 7 2 30 30 H 1.08995 * 109.47404 * 59.99288 * 10 9 7 31 31 H 1.09003 * 109.46395 * 299.99353 * 10 9 7 32 32 H 0.97003 * 120.00498 * 359.97438 * 13 11 10 33 33 H 1.08997 * 117.49836 * 145.02187 * 16 14 13 34 34 H 1.09003 * 117.49830 * 0.02562 * 16 14 13 35 35 H 1.07995 * 119.98650 * 359.97438 * 20 19 17 36 36 H 1.08007 * 119.99642 * 180.25492 * 21 20 19 37 37 H 1.08006 * 120.00494 * 0.02562 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4918 -4.9671 0.0025 12 8 0.2791 -4.9672 0.0024 13 7 2.1658 -6.1343 0.0031 14 6 1.4333 -7.4031 0.0043 15 1 0.3578 -7.3251 -0.1548 16 6 1.9313 -8.5054 0.9412 17 6 2.1451 -8.6303 -0.5686 18 1 1.5379 -9.3597 -1.1045 19 6 3.5463 -8.4415 -1.0904 20 6 4.5427 -7.9877 -0.2460 21 6 5.8293 -7.8197 -0.7219 22 6 6.1183 -8.0946 -2.0466 23 17 7.7329 -7.8774 -2.6465 24 6 5.1193 -8.5436 -2.8934 25 17 5.4804 -8.8896 -4.5559 26 6 3.8332 -8.7167 -2.4140 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8904 30 1 2.8714 -3.6039 0.8921 31 1 2.8726 -3.6047 -0.8878 32 1 3.1358 -6.1343 0.0028 33 1 1.1833 -9.1529 1.3988 34 1 2.8036 -8.2864 1.5570 35 1 4.3164 -7.7683 0.7870 36 1 6.6081 -7.4691 -0.0608 37 1 3.0533 -9.0666 -3.0742 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360543613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:58 Heat of formation + Delta-G solvation = -13.888414 kcal Electronic energy + Delta-G solvation = -21990.079406 eV Core-core repulsion = 18398.252903 eV Total energy + Delta-G solvation = -3591.826503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.55675 -39.14063 -37.59441 -36.85431 -36.41520 -33.47539 -32.84788 -31.46440 -30.95788 -30.46349 -25.87512 -24.36507 -23.52011 -22.66985 -21.29248 -20.60973 -19.83989 -17.81369 -17.10284 -16.55704 -16.23187 -15.78232 -15.53960 -14.88933 -14.66599 -14.43522 -14.36189 -14.22687 -13.95779 -13.20754 -12.68197 -12.57946 -12.23456 -12.21247 -12.16441 -12.01474 -11.86739 -11.31401 -11.25458 -11.18069 -11.16402 -10.94628 -10.74917 -10.57753 -9.99107 -9.70351 -9.37527 -9.22748 -9.05863 -9.02905 -8.55238 -8.33100 -5.97256 -4.01612 0.50160 0.67612 1.49381 1.85816 2.84924 3.10814 3.30634 3.32245 3.39826 3.43178 3.78310 4.15017 4.23128 4.46687 4.48462 4.58155 4.63001 4.74446 4.83258 5.10747 5.27983 5.33665 5.37975 5.43462 5.50286 5.62571 5.69197 5.88646 5.99641 6.15848 6.17660 6.19634 6.61951 6.84849 7.72718 7.75684 7.83752 8.05248 8.36713 8.67867 9.06787 9.62155 11.13695 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.011812 B = 0.002911 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.879828 B = 9616.164202 C =11028.455549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.515 3.485 12 O -0.529 6.529 13 N -0.717 5.717 14 C 0.109 3.891 15 H 0.144 0.856 16 C -0.186 4.186 17 C -0.139 4.139 18 H 0.125 0.875 19 C -0.025 4.025 20 C -0.118 4.118 21 C -0.088 4.088 22 C -0.038 4.038 23 Cl -0.050 7.050 24 C -0.023 4.023 25 Cl -0.049 7.049 26 C -0.093 4.093 27 H 0.260 0.740 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.397 0.603 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.542 -23.620 -2.604 26.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.304 3.696 12 O -0.404 6.404 13 N -0.370 5.370 14 C 0.001 3.999 15 H 0.162 0.838 16 C -0.224 4.224 17 C -0.159 4.159 18 H 0.143 0.857 19 C -0.026 4.026 20 C -0.136 4.136 21 C -0.107 4.107 22 C -0.066 4.066 23 Cl -0.021 7.021 24 C -0.051 4.051 25 Cl -0.020 7.020 26 C -0.112 4.112 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.233 0.767 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 11.668 -23.448 -2.819 26.342 hybrid contribution 1.193 0.781 -0.266 1.450 sum 12.861 -22.667 -3.085 26.243 Atomic orbital electron populations 1.70006 1.06051 1.26490 1.50250 1.25021 0.94825 0.99240 0.95280 0.86540 0.80028 0.83830 0.77601 1.19734 1.21001 1.21002 1.21248 0.92975 0.90966 1.51324 0.92540 1.18907 0.93135 0.89320 0.98679 1.21891 1.00814 0.91711 1.02596 1.21632 0.88704 0.85405 0.73872 1.90666 1.14403 1.87464 1.47817 1.45778 1.09762 1.04449 1.77017 1.21662 0.97448 0.79927 1.00814 0.83848 1.23634 1.04271 1.03145 0.91355 1.21643 0.93823 1.03173 0.97259 0.85690 1.19122 0.94108 0.96696 0.92632 1.21209 0.91872 0.99804 1.00727 1.21054 0.97661 0.99035 0.92980 1.20785 0.86828 1.04802 0.94177 1.98397 1.20122 1.95530 1.88085 1.20755 0.94120 1.03457 0.86757 1.98400 1.94894 1.93241 1.15435 1.20835 0.94345 1.00483 0.95502 0.92994 0.95766 0.95752 0.90129 0.90150 0.76724 0.87281 0.88032 0.84110 0.83683 0.83863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.53 -14.85 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.13 -2.60 5.64 -27.88 -0.16 -2.75 16 11 C 0.51 9.56 7.83 -10.99 -0.09 9.48 16 12 O -0.53 -12.00 15.55 5.56 0.09 -11.91 16 13 N -0.72 -9.56 5.33 -53.80 -0.29 -9.85 16 14 C 0.11 1.20 6.38 -67.93 -0.43 0.77 16 15 H 0.14 1.80 7.40 -51.93 -0.38 1.42 16 16 C -0.19 -1.45 9.78 -26.73 -0.26 -1.71 16 17 C -0.14 -1.13 6.04 -91.77 -0.55 -1.69 16 18 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 19 C -0.02 -0.21 5.18 -104.62 -0.54 -0.76 16 20 C -0.12 -0.92 7.44 -39.58 -0.29 -1.22 16 21 C -0.09 -0.71 9.83 -39.55 -0.39 -1.10 16 22 C -0.04 -0.36 6.32 -39.47 -0.25 -0.61 16 23 Cl -0.05 -0.48 27.96 -51.86 -1.45 -1.93 16 24 C -0.02 -0.23 6.32 -39.47 -0.25 -0.48 16 25 Cl -0.05 -0.47 27.96 -51.86 -1.45 -1.92 16 26 C -0.09 -0.83 9.52 -39.55 -0.38 -1.20 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.40 4.42 6.16 -40.82 -0.25 4.17 16 33 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.72 6.18 -51.93 -0.32 0.40 16 35 H 0.14 0.89 5.81 -52.49 -0.30 0.59 16 36 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 346.56 15.07 5.22 5.22 Total: -1.00 -33.36 346.56 -10.47 -43.83 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.18 Total: 0.50 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -4.12 Total: -13.98 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.45 Total: -36.39 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -2.90 Total: -3.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.36 -10.47 -43.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360543613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.943 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds