Wall clock time and date at job start Tue Mar 31 2020 15:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99934 * 2 1 4 4 H 1.48497 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47037 * 299.99730 * 3 2 1 6 6 H 1.48496 * 109.47358 * 59.99938 * 3 2 1 7 7 C 1.37878 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99965 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47290 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47009 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00452 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99591 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99789 * 179.97438 * 13 11 10 15 15 H 1.08996 * 115.55110 * 9.32824 * 14 13 11 16 16 C 1.53003 * 117.49633 * 223.62096 * 14 13 11 17 17 C 1.52999 * 117.49820 * 155.00091 * 14 13 11 18 18 H 1.08995 * 117.49765 * 214.99790 * 17 14 13 19 19 C 1.50706 * 117.49833 * 0.02562 * 17 14 13 20 20 C 1.38262 * 119.98013 * 59.72425 * 19 17 14 21 21 C 1.38211 * 120.03072 * 179.72311 * 20 19 17 22 22 C 1.38343 * 120.00541 * 0.55548 * 21 20 19 23 23 Cl 1.73601 * 120.02171 * 179.74743 * 22 21 20 24 24 C 1.38447 * 119.95598 * 359.71659 * 22 21 20 25 25 Cl 1.73606 * 120.01614 * 180.02562 * 24 22 21 26 26 C 1.38203 * 119.97661 * 239.99755 * 19 17 14 27 27 H 0.97005 * 120.00141 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47478 * 59.99560 * 9 7 2 29 29 H 1.09003 * 109.46874 * 299.99286 * 9 7 2 30 30 H 1.08995 * 109.47404 * 59.99288 * 10 9 7 31 31 H 1.09003 * 109.46395 * 299.99353 * 10 9 7 32 32 H 0.97003 * 120.00498 * 359.97438 * 13 11 10 33 33 H 1.08997 * 117.49836 * 145.02187 * 16 14 13 34 34 H 1.09003 * 117.49830 * 0.02562 * 16 14 13 35 35 H 1.07995 * 119.98650 * 359.97438 * 20 19 17 36 36 H 1.08007 * 119.99642 * 180.25492 * 21 20 19 37 37 H 1.08006 * 120.00494 * 0.02562 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4918 -4.9671 0.0025 12 8 0.2791 -4.9672 0.0024 13 7 2.1658 -6.1343 0.0031 14 6 1.4333 -7.4031 0.0043 15 1 0.3578 -7.3251 -0.1548 16 6 1.9313 -8.5054 0.9412 17 6 2.1451 -8.6303 -0.5686 18 1 1.5379 -9.3597 -1.1045 19 6 3.5463 -8.4415 -1.0904 20 6 4.5427 -7.9877 -0.2460 21 6 5.8293 -7.8197 -0.7219 22 6 6.1183 -8.0946 -2.0466 23 17 7.7329 -7.8774 -2.6465 24 6 5.1193 -8.5436 -2.8934 25 17 5.4804 -8.8896 -4.5559 26 6 3.8332 -8.7167 -2.4140 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8904 30 1 2.8714 -3.6039 0.8921 31 1 2.8726 -3.6047 -0.8878 32 1 3.1358 -6.1343 0.0028 33 1 1.1833 -9.1529 1.3988 34 1 2.8036 -8.2864 1.5570 35 1 4.3164 -7.7683 0.7870 36 1 6.6081 -7.4691 -0.0608 37 1 3.0533 -9.0666 -3.0742 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360543613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:58 Heat of formation + Delta-G solvation = -33.281785 kcal Electronic energy + Delta-G solvation = -21990.920366 eV Core-core repulsion = 18398.252903 eV Total energy + Delta-G solvation = -3592.667463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38844 -40.32902 -38.49549 -37.56123 -37.18140 -35.55475 -34.09862 -32.81431 -32.08691 -31.26310 -27.81882 -25.04616 -24.35554 -24.08716 -22.39317 -21.42435 -21.30618 -18.87317 -18.53448 -17.67971 -17.30487 -16.92132 -16.48070 -16.42433 -16.29065 -15.43103 -15.17486 -15.01759 -14.85452 -14.47541 -14.31157 -14.14626 -13.24717 -13.19806 -13.02390 -12.92193 -12.84786 -12.76353 -12.56664 -12.44690 -12.20499 -11.94114 -11.92999 -11.89124 -11.65348 -11.43810 -11.27694 -10.76647 -10.56859 -10.05360 -9.88177 -9.42011 -8.17434 -6.31080 -0.18143 0.03413 0.79450 1.17624 1.43001 1.44064 1.57304 1.63467 2.09929 2.31545 2.44831 3.03942 3.15860 3.45345 3.61176 3.76203 3.87363 3.96041 4.00491 4.10286 4.20208 4.45009 4.49243 4.54612 4.69739 4.80872 4.83578 4.89094 5.03449 5.09008 5.11997 5.36180 5.48638 5.54013 5.56063 5.64019 5.86338 6.18569 6.53525 6.87449 7.31253 7.39232 8.95337 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.011812 B = 0.002911 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.879828 B = 9616.164202 C =11028.455549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.972 3.028 4 H -0.253 1.253 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.043 3.957 10 C -0.121 4.121 11 C 0.516 3.484 12 O -0.582 6.582 13 N -0.693 5.693 14 C 0.068 3.932 15 H 0.122 0.878 16 C -0.160 4.160 17 C -0.118 4.118 18 H 0.142 0.858 19 C -0.034 4.034 20 C -0.115 4.115 21 C -0.087 4.087 22 C -0.050 4.050 23 Cl -0.056 7.056 24 C -0.037 4.037 25 Cl -0.056 7.056 26 C -0.097 4.097 27 H 0.263 0.737 28 H -0.018 1.018 29 H -0.015 1.015 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.411 0.589 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.965 -24.456 -1.781 28.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.796 3.204 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.093 0.907 9 C 0.005 3.995 10 C -0.161 4.161 11 C 0.305 3.695 12 O -0.461 6.461 13 N -0.345 5.345 14 C -0.038 4.038 15 H 0.140 0.860 16 C -0.198 4.198 17 C -0.137 4.137 18 H 0.160 0.840 19 C -0.035 4.035 20 C -0.133 4.133 21 C -0.106 4.106 22 C -0.077 4.077 23 Cl -0.027 7.027 24 C -0.065 4.065 25 Cl -0.027 7.027 26 C -0.116 4.116 27 H 0.071 0.929 28 H 0.000 1.000 29 H 0.004 0.996 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.249 0.751 33 H 0.145 0.855 34 H 0.135 0.865 35 H 0.178 0.822 36 H 0.183 0.817 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 14.156 -24.346 -1.996 28.233 hybrid contribution 0.445 0.941 -0.526 1.166 sum 14.601 -23.405 -2.522 27.701 Atomic orbital electron populations 1.70177 1.08249 1.27712 1.51544 1.26110 0.95712 1.03854 0.94685 0.85300 0.79325 0.78235 0.77551 1.17666 1.20740 1.20546 1.21738 0.93977 0.91632 1.50634 0.90684 1.18682 0.93667 0.92326 0.94821 1.21650 0.99418 0.90264 1.04742 1.21274 0.87849 0.86504 0.73851 1.90652 1.16485 1.88211 1.50799 1.45378 1.10282 1.03934 1.74907 1.21763 0.96724 0.79761 1.05593 0.86014 1.23767 1.04622 1.00128 0.91327 1.21672 0.93319 1.00744 0.97953 0.83977 1.19236 0.94452 0.97123 0.92656 1.21449 0.91508 0.98842 1.01483 1.21313 0.98349 0.98347 0.92589 1.20989 0.86617 1.05239 0.94863 1.98394 1.20449 1.95572 1.88244 1.20898 0.94661 1.04294 0.86635 1.98394 1.94952 1.93344 1.15999 1.20997 0.94324 1.00334 0.95967 0.92869 0.99954 0.99648 0.87543 0.88229 0.75119 0.85517 0.86538 0.82198 0.81736 0.83008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.22 13.29 21.45 0.28 -58.94 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.11 16 3 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 4 H -0.25 -10.62 7.11 99.48 0.71 -9.92 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.54 -30.70 9.11 25.60 0.23 -30.46 16 8 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.04 2.36 4.26 29.85 0.13 2.49 16 10 C -0.12 -4.78 5.64 29.85 0.17 -4.61 16 11 C 0.52 19.29 7.83 87.66 0.69 19.98 16 12 O -0.58 -27.65 15.55 -3.02 -0.05 -27.70 16 13 N -0.69 -17.42 5.33 -442.53 -2.36 -19.78 16 14 C 0.07 1.40 6.38 44.99 0.29 1.69 16 15 H 0.12 3.11 7.40 -2.39 -0.02 3.09 16 16 C -0.16 -1.97 9.78 30.60 0.30 -1.67 16 17 C -0.12 -1.58 6.04 -11.54 -0.07 -1.65 16 18 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 19 C -0.03 -0.49 5.18 -19.86 -0.10 -0.59 16 20 C -0.11 -1.41 7.44 22.27 0.17 -1.24 16 21 C -0.09 -1.15 9.83 22.29 0.22 -0.93 16 22 C -0.05 -0.85 6.32 22.34 0.14 -0.70 16 23 Cl -0.06 -0.98 27.96 -2.72 -0.08 -1.05 16 24 C -0.04 -0.67 6.32 22.34 0.14 -0.53 16 25 Cl -0.06 -1.04 27.96 -2.72 -0.08 -1.11 16 26 C -0.10 -1.55 9.52 22.29 0.21 -1.34 16 27 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 28 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 29 H -0.01 -0.93 8.10 -2.39 -0.02 -0.95 16 30 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 31 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 32 H 0.41 8.00 6.16 -92.71 -0.57 7.43 16 33 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.12 1.12 6.18 -2.39 -0.01 1.11 16 35 H 0.16 1.31 5.81 -2.91 -0.02 1.30 16 36 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -76.04 346.56 3.27 -72.77 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.54 Total: 9.06 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 2.97 Total: -19.47 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -2.07 Total: -78.72 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.05 Total: -27.70 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.15 Total: -2.17 kcal Total: -76.04 3.27 -72.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360543613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.487 kcal (2) G-P(sol) polarization free energy of solvation -76.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds