Wall clock time and date at job start Tue Mar 31 2020 15:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99667 * 2 1 4 4 H 1.48500 * 109.47014 * 269.99757 * 3 2 1 5 5 H 1.48494 * 109.47223 * 29.99633 * 3 2 1 6 6 H 1.48500 * 109.46841 * 149.99956 * 3 2 1 7 7 C 1.37872 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00172 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00279 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.52077 * 60.07913 * 9 7 2 11 11 C 1.53044 * 109.49764 * 180.16116 * 9 7 2 12 12 C 1.53042 * 109.53303 * 181.31561 * 11 9 7 13 13 C 1.53622 * 109.24364 * 298.50830 * 12 11 9 14 14 N 1.46925 * 108.54229 * 54.85792 * 13 12 11 15 15 C 1.34781 * 120.62902 * 126.36594 * 14 13 12 16 16 O 1.21566 * 119.99867 * 179.72284 * 15 14 13 17 17 C 1.47692 * 119.99913 * 359.72415 * 15 14 13 18 18 C 1.39738 * 120.16526 * 269.99741 * 17 15 14 19 19 Cl 1.73604 * 120.08960 * 0.04599 * 18 17 15 20 20 C 1.38103 * 119.82874 * 180.02562 * 18 17 15 21 21 C 1.38327 * 120.16719 * 0.27766 * 20 18 17 22 22 C 1.38337 * 120.33621 * 359.44640 * 21 20 18 23 23 C 1.38091 * 120.17032 * 0.55148 * 22 21 20 24 24 Cl 1.73596 * 120.08610 * 179.70453 * 23 22 21 25 25 C 1.46923 * 118.74124 * 306.09549 * 14 13 12 26 26 H 0.97003 * 120.00090 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.45837 * 301.33345 * 11 9 7 28 28 H 1.09000 * 109.45865 * 61.29470 * 11 9 7 29 29 H 1.09003 * 109.50003 * 58.58775 * 12 11 9 30 30 H 1.09000 * 109.48994 * 178.64864 * 12 11 9 31 31 H 1.09000 * 109.73903 * 295.12584 * 13 12 11 32 32 H 1.08999 * 109.66460 * 174.55409 * 13 12 11 33 33 H 1.08002 * 119.91402 * 179.97438 * 20 18 17 34 34 H 1.07994 * 119.83239 * 179.69948 * 21 20 18 35 35 H 1.08003 * 119.91090 * 180.25822 * 22 21 20 36 36 H 1.08997 * 109.58978 * 173.64791 * 25 14 13 37 37 H 1.09001 * 109.58711 * 294.07091 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8755 -0.6813 0.8915 11 6 4.0224 -2.6366 -0.0024 12 6 5.5525 -2.6378 0.0313 13 6 6.0871 -1.9329 -1.2246 14 7 5.4866 -0.5941 -1.3003 15 6 6.2632 0.5011 -1.4197 16 8 5.7540 1.6029 -1.4864 17 6 7.7327 0.3624 -1.4694 18 6 8.4812 0.3924 -0.2898 19 17 7.6861 0.5918 1.2406 20 6 9.8550 0.2627 -0.3444 21 6 10.4908 0.1091 -1.5632 22 6 9.7562 0.0728 -2.7348 23 6 8.3818 0.2012 -2.6964 24 17 7.4627 0.1629 -4.1687 25 6 4.0234 -0.4722 -1.2495 26 1 -0.4850 0.8401 -0.0004 27 1 3.6395 -3.1595 0.8739 28 1 3.6787 -3.1413 -0.9053 29 1 5.8972 -2.1115 0.9215 30 1 5.9150 -3.6655 0.0530 31 1 5.8162 -2.5055 -2.1116 32 1 7.1717 -1.8439 -1.1617 33 1 10.4349 0.2861 0.5665 34 1 11.5659 0.0130 -1.6001 35 1 10.2593 -0.0516 -3.6824 36 1 3.7457 0.5808 -1.2030 37 1 3.5876 -0.9281 -2.1385 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397654432.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:30 Heat of formation + Delta-G solvation = -20.217355 kcal Electronic energy + Delta-G solvation = -24032.857711 eV Core-core repulsion = 20440.756765 eV Total energy + Delta-G solvation = -3592.100946 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.48230 -38.83567 -36.96598 -36.91800 -36.46467 -33.49005 -32.08000 -31.43946 -31.03133 -30.38073 -25.55890 -25.19722 -23.31262 -23.12145 -22.03638 -20.16326 -18.91929 -17.73705 -16.94996 -16.70982 -16.39614 -16.03305 -15.01067 -14.69431 -14.51942 -14.18623 -13.95852 -13.86909 -13.69472 -13.07237 -12.84079 -12.63346 -12.55590 -12.43915 -12.16016 -12.00840 -11.36638 -11.36559 -11.27882 -11.10993 -11.06681 -10.59964 -10.40460 -10.10422 -9.84008 -9.70526 -9.30016 -9.13091 -9.09343 -9.07882 -8.59372 -8.10495 -6.09708 -4.11172 0.53722 0.61158 1.58834 2.00864 2.73807 2.97060 3.29688 3.39517 3.48588 3.59517 4.28791 4.41266 4.43863 4.64673 4.74120 4.97095 5.01609 5.13584 5.22964 5.32622 5.49165 5.60222 5.62175 5.76408 5.80225 6.00636 6.08915 6.09947 6.17220 6.40543 6.52083 6.64004 6.74336 6.82595 7.14424 7.44323 7.71573 7.75351 8.36932 8.50595 8.93527 9.52160 11.02192 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.005194 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.185728 B = 5389.839826 C = 5678.146056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.075 3.925 3 Si 0.874 3.126 4 H -0.272 1.272 5 H -0.295 1.295 6 H -0.261 1.261 7 C -0.515 4.515 8 H 0.078 0.922 9 C 0.006 3.994 10 H 0.031 0.969 11 C -0.100 4.100 12 C -0.135 4.135 13 C 0.110 3.890 14 N -0.590 5.590 15 C 0.554 3.446 16 O -0.523 6.523 17 C -0.095 4.095 18 C -0.003 4.003 19 Cl -0.036 7.036 20 C -0.107 4.107 21 C -0.086 4.086 22 C -0.108 4.108 23 C -0.003 4.003 24 Cl -0.041 7.041 25 C 0.104 3.896 26 H 0.265 0.735 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.080 0.920 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.112 -3.428 -3.796 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.186 1.186 7 C -0.553 4.553 8 H 0.096 0.904 9 C -0.014 4.014 10 H 0.049 0.951 11 C -0.137 4.137 12 C -0.173 4.173 13 C -0.013 4.013 14 N -0.321 5.321 15 C 0.339 3.661 16 O -0.399 6.399 17 C -0.100 4.100 18 C -0.031 4.031 19 Cl -0.007 7.007 20 C -0.126 4.126 21 C -0.105 4.105 22 C -0.127 4.127 23 C -0.030 4.030 24 Cl -0.012 7.012 25 C -0.016 4.016 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.098 0.902 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 23.467 -2.723 -3.826 23.932 hybrid contribution 0.283 0.989 -0.062 1.031 sum 23.750 -1.734 -3.888 24.129 Atomic orbital electron populations 1.69888 1.06251 1.27130 1.50032 1.25020 0.94722 0.99004 0.94055 0.87062 0.79862 0.83590 0.79113 1.19857 1.22249 1.18623 1.20945 0.88144 0.94610 1.51633 0.90397 1.19484 0.96810 0.92203 0.92868 0.95064 1.21439 0.91893 0.98802 1.01602 1.22054 0.98607 0.99456 0.97195 1.21783 0.96937 0.83347 0.99194 1.48333 1.08353 1.05411 1.70016 1.17896 0.85101 0.85235 0.77836 1.90823 1.73861 1.25340 1.49915 1.19878 0.95522 1.03058 0.91572 1.20893 0.92817 1.02262 0.87088 1.98446 1.79917 1.95226 1.27065 1.21138 0.91752 1.00100 0.99640 1.21186 1.00581 0.97892 0.90835 1.21116 0.91099 1.00348 1.00126 1.20840 0.92378 1.02685 0.87135 1.98424 1.73711 1.96468 1.32596 1.22693 0.74905 1.02671 1.01380 0.92513 0.92126 0.92432 0.91820 0.91591 0.91134 0.91332 0.83707 0.83690 0.83739 0.90240 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 2 C 0.07 2.19 5.45 -17.82 -0.10 2.09 16 3 Si 0.87 23.57 24.32 -169.99 -4.13 19.44 16 4 H -0.27 -7.42 6.92 56.52 0.39 -7.03 16 5 H -0.30 -7.91 7.11 56.52 0.40 -7.50 16 6 H -0.26 -7.06 6.53 56.52 0.37 -6.69 16 7 C -0.52 -14.31 9.15 -34.44 -0.31 -14.62 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C 0.01 0.14 1.84 -91.65 -0.17 -0.03 16 10 H 0.03 0.78 7.21 -51.93 -0.37 0.41 16 11 C -0.10 -1.87 5.10 -26.69 -0.14 -2.00 16 12 C -0.13 -2.03 6.10 -26.39 -0.16 -2.19 16 13 C 0.11 1.65 6.37 -3.49 -0.02 1.63 16 14 N -0.59 -11.29 2.97 -173.68 -0.52 -11.80 16 15 C 0.55 10.85 5.25 -12.40 -0.07 10.79 16 16 O -0.52 -12.45 16.52 5.31 0.09 -12.36 16 17 C -0.10 -1.45 3.63 -104.91 -0.38 -1.83 16 18 C 0.00 -0.04 6.22 -39.07 -0.24 -0.28 16 19 Cl -0.04 -0.53 28.04 -51.86 -1.45 -1.98 16 20 C -0.11 -0.98 9.82 -39.60 -0.39 -1.37 16 21 C -0.09 -0.63 10.04 -39.51 -0.40 -1.02 16 22 C -0.11 -0.95 9.82 -39.60 -0.39 -1.34 16 23 C 0.00 -0.03 6.35 -39.07 -0.25 -0.28 16 24 Cl -0.04 -0.55 28.04 -51.86 -1.45 -2.01 16 25 C 0.10 2.36 5.10 -3.71 -0.02 2.34 16 26 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.89 6.23 -51.93 -0.32 0.57 16 33 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.15 0.54 8.06 -52.49 -0.42 0.11 16 35 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 36 H 0.08 2.04 2.32 -51.93 -0.12 1.92 16 37 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 329.69 15.07 4.97 4.97 Total: -1.00 -33.71 329.69 -8.98 -42.69 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -4.22 Total: -3.99 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -3.03 Total: -8.12 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.26 Total: -38.62 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.13 Total: 19.44 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -2.91 Total: -3.99 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.71 -8.98 -42.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397654432.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.469 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds